docs/source/docs/fileformats_index.md

   1 # Formats of Input and Output files
   2
   3 This document the formats and examples of all the input and output
   4 files used in MACS3.
   5
   6 ```{toctree}
   7 :maxdepth: 2
   8
   9 callpeakxls.md
  10 SAMBAMBAMPE.md
  11 BED.md
  12 BEDPE.md
  13 bedGraph.md
  14 cutoffanalysis.md
  15 narrowPeak.md
  16 broadPeak.md
  17 gappedPeak.md
  18 vcf.md
  19 hmmratacModel.md