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drwxr-xr-x		..
-rw-r--r--	7	.gitignore	blob \| blame \| history \| raw
-rw-r--r--	5967	FullSomaticPipeline.json	blob \| blame \| history \| raw
-rw-r--r--	8710	FullSomaticPipeline.wdl	blob \| blame \| history \| raw
drwxr-xr-x	-	FullSomaticPipeline	tree \| history
-rw-r--r--	231	Makefile	blob \| blame \| history \| raw
-rw-r--r--	19155	ReadMe.md	blob \| blame \| history \| raw
drwxr-xr-x	-	cnv_somatic	tree \| history
-rw-r--r--	1742	cnv_somatic_pair_workflow.b38.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	44737	cnv_somatic_pair_workflow.wdl	blob \| blame \| history \| raw
-rw-r--r--	999	cnv_somatic_panel_workflow.b38.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	10012	cnv_somatic_panel_workflow.wdl	blob \| blame \| history \| raw
-rw-r--r--	1110	cromwell.conf	blob \| blame \| history \| raw
drwxr-xr-x	-	fm2	tree \| history
-rw-r--r--	2608	germline1-haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	7060	germline1-haplotypecaller-gvcf-gatk4.wdl	blob \| blame \| history \| raw
-rw-r--r--	4411	germline2-joint-discovery-gatk4-local.hg38.wgs.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	31076	germline2-joint-discovery-gatk4-local.wdl	blob \| blame \| history \| raw
-rw-r--r--	4710	mutect2.bgi.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	48436	mutect2.wdl	blob \| blame \| history \| raw
-rw-r--r--	1941	paired-fastq-to-unmapped-bam.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	4484	paired-fastq-to-unmapped-bam.wdl	blob \| blame \| history \| raw
-rw-r--r--	5599	processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json	blob \| blame \| history \| raw
-rw-r--r--	21127	processing-for-variant-discovery-gatk4.wdl	blob \| blame \| history \| raw