new file: R/deseq2/deseq2-analysis-template.R
[GalaxyCodeBases.git] / old / gitsubmupd.sh
blob07fc5f75b6996d87cb3e8033db5c5208db703213
1 #!/bin/sh
3 git pull
4 git submodule update
5 git submodule foreach git pull
6 git submodule foreach git checkout master
8 #git submodule foreach git fsck
9 #git submodule foreach git gc --aggressive --prune=now
11 #git submodule foreach git checkout master
12 git submodule
13 git diff .
15 git subtree pull --prefix=c_cpp/lib/cstring git://github.com/cloudwu/cstring.git master
16 git subtree pull --prefix=c_cpp/lib/htslib git://github.com/samtools/htslib.git master
17 git subtree pull --squash --prefix=c_cpp/lib/gnulib git://git.savannah.gnu.org/gnulib.git master
18 git gc --aggressive --prune=now