lispstat.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-06-22 17:07:24 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       lispstat.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *lispstat-home-dir*
  21            *lispstat-data-dir* *lispstat-examples-dir*))
  22
  23 (in-package :lisp-stat-config)
  24
  25 (defparameter *lispstat-home-dir*
  26   (directory-namestring
  27    (truename (asdf:system-definition-pathname :lispstat)))
  28   "Value considered \"home\" for our data")
  29
  30 #|
  31   (setf *lispstat-home-dir*
  32       (directory-namestring (truename (asdf:system-definition-pathname
  33                                        :lispstat))))
  34 |#
  35
  36 (macrolet ((ls-dir (root-str)
  37              `(pathname (concatenate 'string
  38                                      (namestring *lispstat-home-dir*) ,root-str)))
  39
  40            (ls-defdir (target-dir-var  root-str)
  41              `(defvar ,target-dir-var (ls-dir ,root-str))))
  42
  43   ;; reminder of testing
  44   ;;(macroexpand '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  45   ;;(macroexpand-1 '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  46   ;;(macroexpand-1 '(ls-dir "ASDF"))
  47
  48   (ls-defdir *lispstat-asdf-dir* "ASDF/")
  49   (ls-defdir *lispstat-data-dir* "Data/")
  50   (ls-defdir *lispstat-external-dir* "external/")
  51 )
  52
  53 ;;(pushnew *lispstat-asdf-dir* asdf:*central-registry*)
  54
  55
  56 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  57
  58 ;;; back to our regularly scheduled work...
  59 ;;; We should not need these, I think, but?
  60 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  61 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  62 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  63 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  64
  65 ;;; MAJOR HACK, FIXME!
  66 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  67
  68 (in-package :cl-user)
  69
  70 (defpackage #:lispstat-system
  71     (:use :common-lisp :asdf))
  72
  73 (in-package #:lispstat-system)
  74
  75 ;;; To avoid renaming everything from *.lsp to *.lisp...
  76 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  77 ;;; NOT secure against serving multiple architectures/hardwares from
  78 ;;; the same file system (i.e. PPC and x86 would not be
  79 ;;; differentiated).
  80
  81 (defclass lispstat-lsp-source-file (cl-source-file) ())
  82 (defparameter *fasl-directory*
  83    (make-pathname :directory '(:relative
  84                                #+sbcl "sbcl-fasl"
  85                                #+openmcl "openmcl-fasl"
  86                                #+cmu "cmucl-fasl"
  87                                #+clisp "clisp-fasl"
  88                                #-(or sbcl openmcl clisp cmucl) "fasl"
  89                                )))
  90
  91
  92 ;;; Handle Luke's *.lsp suffix
  93 (defmethod source-file-type ((c lispstat-lsp-source-file) (s module)) "lsp")
  94 (defmethod asdf::output-files :around ((operation compile-op)
  95                                        (c lispstat-lsp-source-file))
  96   (list (merge-pathnames *fasl-directory*
  97                          (compile-file-pathname (component-pathname c)))))
  98 ;;; again, thanks to Cyrus for saving me time...
  99
 100
 101 (defsystem "lispstat"
 102   :version #.(with-open-file
 103                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 104                (read vers))
 105   :author "A.J. Rossini <blindglobe@gmail.com>"
 106   :license "BSD"
 107   :description "CommonLispStat (CLS): A System for Statistical
 108   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 109   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 110   at CMU, on leave somewhere?).   Last touched by him in 1991, then in
 111   2005--2009."
 112   :serial t
 113   :depends-on (:cffi
 114                ;; :cl-plplot ; FIXME: conditional load, tends to crash.
 115                :lisp-matrix
 116                :lift
 117                :xarray
 118                :rsm-string)
 119   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 120                (:static-file "LICENSE")
 121                (:static-file "README")
 122
 123                ;; reading in DSV files for data access
 124                (:module
 125                 "csv-data"
 126                 :pathname "src/data/"
 127                 :components
 128                 ((:file "test-cybertiggyr")
 129                  (:file "dsv-cybertiggyr" :depends-on ( "test-cybertiggyr"))))
 130
 131                (:module
 132                 "packaging"
 133                 :pathname #p"src/"
 134                 :depends-on ("csv-data")
 135                 :components
 136                 ((:file "packages")))
 137
 138                (:module
 139                 "proto-objects"
 140                 :pathname "src/objsys/"
 141                 :serial t
 142                 :depends-on ("packaging")
 143                 :components
 144                 ((:lispstat-lsp-source-file "lsobjects")))
 145
 146                (:module "lispstat-core"
 147                         :pathname "src/basics/"
 148                         :serial t
 149                         :depends-on ("packaging" "proto-objects")
 150                         :components
 151                         (; (:lispstat-lsp-source-file "defsys")
 152                          (:lispstat-lsp-source-file "lstypes")
 153                          (:lispstat-lsp-source-file "lsfloat")
 154
 155                          (:lispstat-lsp-source-file "compound")
 156                          (:lispstat-lsp-source-file "lsmacros"
 157                                                     :depends-on ("compound"))
 158
 159                          (:lispstat-lsp-source-file "lsmath"
 160                                                     :depends-on ("compound"
 161                                                                  "lsmacros"
 162                                                                  "lsfloat"))))
 163
 164                (:module
 165                 "numerics-internal"
 166                 :pathname "src/numerics/"
 167                 :depends-on ("packaging" "proto-objects" "lispstat-core")
 168                 :components
 169                 ((:lispstat-lsp-source-file "cffiglue")
 170                  (:lispstat-lsp-source-file "dists"
 171                                             :depends-on ("cffiglue"))
 172 #|
 173                  (:lispstat-lsp-source-file "matrices"
 174                                             :depends-on ("cffiglue"))
 175                  (:lispstat-lsp-source-file "ladata"
 176                                             :depends-on ("cffiglue"
 177                                                          "matrices"))
 178                  (:file "linalg"
 179                         :depends-on ("cffiglue"
 180                                      "matrices"
 181                                      "ladata"))
 182 |#
 183                  ))
 184
 185
 186                ;; prototype and CLOS approaches.
 187                (:module
 188                 "stat-data"
 189                 :pathname "src/data/"
 190                 :depends-on ("packaging"
 191                              "proto-objects"
 192                              "lispstat-core"
 193                              "numerics-internal")
 194                 :components
 195                 ((:file "dataframe")
 196                  (:file "data")
 197                  (:file "listoflist")))
 198
 199                (:module
 200                 "lispstat-basics"
 201                 :pathname "src/basics/"
 202                 :depends-on ("packaging"
 203                              "proto-objects"
 204                              "lispstat-core"
 205                              "numerics-internal"
 206                              "stat-data")
 207                 :components
 208                 ((:lispstat-lsp-source-file "lsbasics")))
 209
 210
 211
 212                (:module
 213                 "descriptives"
 214                 :pathname "src/describe/"
 215                 :depends-on ("packaging"
 216                              "proto-objects"
 217                              "lispstat-core"
 218                              "numerics-internal"
 219                              "stat-data"
 220                              "lispstat-basics")
 221                 :components
 222                 ((:lispstat-lsp-source-file "statistics")))
 223 #|
 224                (:module
 225                 "visualize"
 226                 :pathname "src/visualize/"
 227                 :depends-on ("lispstat-core")
 228                 :components
 229                 ((:file "plot")))
 230 |#
 231                (:module
 232                 "optimization"
 233                 :pathname "src/numerics/"
 234                 :depends-on ("packaging"
 235                              "proto-objects"
 236                              "lispstat-core"
 237                              "numerics-internal"
 238                              "stat-data"
 239                              "lispstat-basics")
 240                 :components
 241                 ((:file "optimize")))
 242
 243
 244                ;; Applications
 245                (:module
 246                 "stat-models"
 247                 :pathname "src/stat-models/"
 248                 :depends-on ("packaging"
 249                              "proto-objects"
 250                              "lispstat-core"
 251                              "numerics-internal"
 252                              "lispstat-basics"
 253                              "descriptives"
 254                              "optimization")
 255                 :components
 256                 ((:file "regression")
 257                  ;; (:lispstat-lsp-source-file "nonlin"
 258                  ;;       :depends-on ("regression"))
 259                  ;; (:lispstat-lsp-source-file "bayes"
 260                  ;;       :depends-on ("regression"))
 261                  ))
 262
 263                ;; Applications
 264                (:module
 265                 "example-data"
 266                 :pathname "Data/"
 267                 :depends-on ("packaging"
 268                              "proto-objects"
 269                              "lispstat-core"
 270                              "numerics-internal"
 271                              "lispstat-basics"
 272                              "descriptives"
 273                              "optimization")
 274                 :components
 275                 ((:file "examples")
 276                  (:lispstat-lsp-source-file "absorbtion")
 277                  (:lispstat-lsp-source-file "diabetes")
 278                  (:lispstat-lsp-source-file "leukemia")
 279                  (:lispstat-lsp-source-file "randu")
 280                  (:lispstat-lsp-source-file "aircraft")
 281                  (:lispstat-lsp-source-file "metabolism")
 282                  (:lispstat-lsp-source-file "book")
 283                  (:lispstat-lsp-source-file "heating")
 284                  (:lispstat-lsp-source-file "oxygen")
 285                  (:lispstat-lsp-source-file "stackloss")
 286                  (:lispstat-lsp-source-file "car-prices")
 287                  (:lispstat-lsp-source-file "iris")
 288                  (:lispstat-lsp-source-file "puromycin")
 289                  (:lispstat-lsp-source-file "tutorial")))
 290
 291                (:module
 292                  "lisp-stat-unittest"
 293                 :depends-on  ("packaging" "proto-objects"
 294                               "lispstat-core"
 295                               "numerics-internal"
 296                               "stat-data"
 297                               "lispstat-basics"
 298                               "descriptives"
 299                               "optimization"
 300                               "stat-models"
 301                               "example-data")
 302                  :pathname "src/unittests/"
 303                  :components ((:file "unittests")
 304                               (:file "unittests-lstypes" :depends-on ("unittests"))
 305                               (:file "unittests-specfn" :depends-on ("unittests"))
 306                               (:file "unittests-prob" :depends-on ("unittests"))
 307                               (:file "unittests-proto" :depends-on ("unittests"))
 308                               (:file "unittests-regression" :depends-on ("unittests"))
 309                               (:file "unittests-listoflist" :depends-on ("unittests"))
 310                               (:file "unittests-arrays" :depends-on ("unittests"))
 311                               (:file "unittests-dataframe" :depends-on ("unittests"))))))