2 ;;; Copyright (c) 2005--2007, by A.J. Rossini <blindglobe@gmail.com>
3 ;;; See COPYRIGHT file for any additional restrictions (BSD license).
4 ;;; Since 1991, ANSI was finally finished. Edited for ANSI Common Lisp.
7 (:documentation
"Experimentation package for LispStat. Serious work
8 should be packaged up elsewhere for reproducibility.")
10 :lisp-stat-object-system
11 :lisp-stat-compound-data
12 :lisp-stat-probability
20 :lisp-stat-regression-linear
)
21 (:shadowing-import-from
:lisp-stat-object-system
22 slot-value call-method call-next-method
)
23 (:shadowing-import-from
:lisp-stat-math
24 expt
+ -
* / ** mod rem abs
1+ 1- log exp sqrt sin cos tan
25 asin acos atan sinh cosh tanh asinh acosh atanh float random
26 truncate floor ceiling round minusp zerop plusp evenp oddp
27 < <= = /= >= > complex conjugate realpart imagpart phase
28 min max logand logior logxor lognot ffloor fceiling
29 ftruncate fround signum cis
)
39 fixnump check-nonneg-fixnum check-one-fixnum
40 check-one-real check-one-number
48 compound-data-p
*compound-data-proto
* compound-object-p
49 compound-data-seq compound-data-length
50 element-list element-seq
52 recursive-map-elements map-elements
55 get-next-element make-next-element set-next-element
62 ^
** expt
+ -
* / mod rem pmin pmax abs
1+ 1- log exp sqrt sin cos
63 tan asin acos atan sinh cosh tanh asinh acosh atanh float random
64 truncate floor ceiling round minusp zerop plusp evenp oddp
< <= =
65 /= >= > complex conjugate realpart imagpart phase min max
66 logand logior logxor lognot ffloor fceiling ftruncate fround
70 matrixp num-rows num-cols matmult identity-matrix diagonal row-list
71 column-list inner-product outer-product cross-product transpose
72 bind-columns bind-rows
75 chol-decomp lu-decomp lu-solve determinant inverse
76 sv-decomp qr-decomp rcondest make-rotation spline
77 kernel-dens kernel-smooth
78 fft make-sweep-matrix sweep-operator ax
+y eigen
80 covariance-matrix matrix print-matrix solve
81 backsolve eigenvalues eigenvectors accumulate cumsum combine
84 ;; in linalg.lisp, possibly not supported by matlisp
85 spline kernel-dens kernel-smooth
91 make-rv-function make-rv-function-1
97 open-file-dialog read-data-file read-data-columns load-data
98 load-example
*variables
* *ask-on-redefine
* def variables savevar
99 undef standard-deviation quantile median interquartile-range
100 fivnum covariance-matrix difference rseq matrix print-matrix solve
101 backsolve eigenvalues eigenvectors accumulate cumsum combine
105 log-gamma uniform-rand normal-cdf normal-quant normal-dens
106 normal-rand bivnorm-cdf cauchy-cdf cauchy-quant cauchy-dens
107 cauchy-rand gamma-cdf gamma-quant gamma-dens gamma-rand
108 chisq-cdf chisq-quant chisq-dens chisq-rand beta-cdf beta-quant
109 beta-dens beta-rand t-cdf t-quant t-dens t-rand f-cdf f-quant
110 f-dens f-rand poisson-cdf poisson-quant poisson-pmf poisson-rand
111 binomial-cdf binomial-quant binomial-pmf binomial-rand
113 ;;; Here is where we have a problem -- lispstat core should be core
114 ;;; data management and config problems, with packages providing
115 ;;; specialized extensions to LispStat, i.e. regression, nonlin
116 ;;; regression, bayesian regression via laplace approximation, etc.
118 ;;; The following could be considered "recommended packages", similar
119 ;;; to the idea of the recommended packages in R.
122 regression-model regression-model-proto x y intercept sweep-matrix
123 basis weights included total-sum-of-squares residual-sum-of-squares
124 predictor-names response-name case-labels
127 nreg-model nreg-model-proto mean-function theta-hat epsilon
131 bayes-model bayes-model-proto bayes-internals
))
133 (defpackage :lisp-stat-user
134 (:documentation
"Experimentation package for LispStat.
135 Serious work should be placed in a similar package elsewhere for
136 reproducibility. But this should hint as to what needs to be
137 done for a user- or analysis-package.")
138 (:nicknames
:ls-user
)
141 (:shadowing-import-from
:lisp-stat
142 slot-value call-method call-next-method
144 expt
+ -
* / ** mod rem abs
1+ 1- log exp sqrt sin cos tan
145 asin acos atan sinh cosh tanh asinh acosh atanh float random
146 truncate floor ceiling round minusp zerop plusp evenp oddp
147 < <= = /= >= > complex conjugate realpart imagpart phase
148 min max logand logior logxor lognot ffloor fceiling
149 ftruncate fround signum cis