1 // Copyright 2002, 2004, 2007 David Hilvert <dhilvert@auricle.dyndns.org>,
2 // <dhilvert@ugcs.caltech.edu>
4 /* This file is part of the Anti-Lamenessing Engine.
6 The Anti-Lamenessing Engine is free software; you can redistribute it and/or modify
7 it under the terms of the GNU General Public License as published by
8 the Free Software Foundation; either version 3 of the License, or
9 (at your option) any later version.
11 The Anti-Lamenessing Engine is distributed in the hope that it will be useful,
12 but WITHOUT ANY WARRANTY; without even the implied warranty of
13 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 GNU General Public License for more details.
16 You should have received a copy of the GNU General Public License
17 along with the Anti-Lamenessing Engine; if not, write to the Free Software
18 Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
22 * align.h: Handle alignment of frames.
29 #include "transformation.h"
40 * Private data members
43 static ale_pos scale_factor
;
46 * Original frame transformation
48 static transformation orig_t
;
51 * Keep data older than latest
54 static transformation
*kept_t
;
58 * Transformation file handlers
61 static tload_t
*tload
;
62 static tsave_t
*tsave
;
65 * Control point variables
68 static const point
**cp_array
;
69 static unsigned int cp_count
;
72 * Reference rendering to align against
75 static render
*reference
;
76 static filter::scaled_filter
*interpolant
;
77 static const image
*reference_image
;
78 static const image
*reference_defined
;
81 * Per-pixel alignment weight map
84 static const image
*weight_map
;
87 * Frequency-dependent alignment weights
90 static double horiz_freq_cut
;
91 static double vert_freq_cut
;
92 static double avg_freq_cut
;
93 static const char *fw_output
;
96 * Algorithmic alignment weighting
99 static const char *wmx_exec
;
100 static const char *wmx_file
;
101 static const char *wmx_defs
;
104 * Non-certainty alignment weights
107 static image
*alignment_weights
;
110 * Latest transformation.
113 static transformation latest_t
;
116 * Flag indicating whether the latest transformation
117 * resulted in a match.
120 static int latest_ok
;
123 * Frame number most recently aligned.
129 * Exposure registration
131 * 0. Preserve the original exposure of images.
133 * 1. Match exposure between images.
135 * 2. Use only image metadata for registering exposure.
138 static int _exp_register
;
143 * 0. Translation only. Only adjust the x and y position of images.
144 * Do not rotate input images or perform projective transformations.
146 * 1. Euclidean transformations only. Adjust the x and y position
147 * of images and the orientation of the image about the image center.
149 * 2. Perform general projective transformations. See the file gpt.h
150 * for more information about general projective transformations.
153 static int alignment_class
;
156 * Default initial alignment type.
158 * 0. Identity transformation.
160 * 1. Most recently accepted frame's final transformation.
163 static int default_initial_alignment_type
;
166 * Projective group behavior
168 * 0. Perturb in output coordinates.
170 * 1. Perturb in source coordinates
173 static int perturb_type
;
178 * This structure contains variables necessary for handling a
179 * multi-alignment element. The change between the non-default old
180 * initial alignment and old final alignment is used to adjust the
181 * non-default current initial alignment. If either the old or new
182 * initial alignment is a default alignment, the old --follow semantics
187 int is_default
, old_is_default
;
190 transformation old_initial_alignment
;
191 transformation old_final_alignment
;
192 transformation default_initial_alignment
;
193 const image
*input_frame
;
203 * Alignment for failed frames -- default or optimal?
205 * A frame that does not meet the match threshold can be assigned the
206 * best alignment found, or can be assigned its alignment default.
209 static int is_fail_default
;
214 * 0. Align images with an error contribution from each color channel.
216 * 1. Align images with an error contribution only from the green channel.
217 * Other color channels do not affect alignment.
219 * 2. Align images using a summation of channels. May be useful when dealing
220 * with images that have high frequency color ripples due to color aliasing.
223 static int channel_alignment_type
;
226 * Error metric exponent
229 static float metric_exponent
;
235 static float match_threshold
;
238 * Perturbation lower and upper bounds.
241 static ale_pos perturb_lower
;
242 static int perturb_lower_percent
;
243 static ale_pos perturb_upper
;
244 static int perturb_upper_percent
;
247 * Maximum level-of-detail scale factor is 2^lod_max/perturb.
253 * Maximum rotational perturbation
256 static ale_pos rot_max
;
259 * Barrel distortion alignment multiplier
262 static ale_pos bda_mult
;
265 * Barrel distortion maximum adjustment rate
268 static ale_pos bda_rate
;
271 * Alignment match sum
274 static ale_accum match_sum
;
277 * Alignment match count.
280 static int match_count
;
283 * Certainty weight flag
285 * 0. Don't use certainty weights for alignment.
287 * 1. Use certainty weights for alignment.
290 static int certainty_weights
;
293 * Global search parameter
295 * 0. Local: Local search only.
296 * 1. Inner: Alignment reference image inner region
297 * 2. Outer: Alignment reference image outer region
298 * 3. All: Alignment reference image inner and outer regions.
299 * 4. Central: Inner if possible; else, best of inner and outer.
300 * 5. Points: Align by control points.
306 * Multi-alignment cardinality.
309 static unsigned int _ma_card
;
312 * Multi-alignment contiguity.
315 static double _ma_cont
;
318 * Minimum overlap for global searches
321 static ale_pos _gs_mo
;
322 static int gs_mo_percent
;
328 static exclusion
*ax_parameters
;
332 * Types for scale clusters.
335 struct nl_scale_cluster
{
336 const image
*accum_max
;
337 const image
*accum_min
;
338 const image
*certainty_max
;
339 const image
*certainty_min
;
340 const image
*aweight_max
;
341 const image
*aweight_min
;
342 exclusion
*ax_parameters
;
345 const image
*input_max
;
346 const image
*input_min
;
349 struct scale_cluster
{
351 const image
*certainty
;
352 const image
*aweight
;
353 exclusion
*ax_parameters
;
358 nl_scale_cluster
*nl_scale_clusters
;
362 * Check for exclusion region coverage in the reference
365 static int ref_excluded(int i
, int j
, point offset
, exclusion
*params
, int param_count
) {
366 for (int idx
= 0; idx
< param_count
; idx
++)
367 if (params
[idx
].type
== exclusion::RENDER
368 && i
+ offset
[0] >= params
[idx
].x
[0]
369 && i
+ offset
[0] <= params
[idx
].x
[1]
370 && j
+ offset
[1] >= params
[idx
].x
[2]
371 && j
+ offset
[1] <= params
[idx
].x
[3])
378 * Check for exclusion region coverage in the input
381 static int input_excluded(ale_pos ti
, ale_pos tj
, exclusion
*params
, int param_count
) {
382 for (int idx
= 0; idx
< param_count
; idx
++)
383 if (params
[idx
].type
== exclusion::FRAME
384 && ti
>= params
[idx
].x
[0]
385 && ti
<= params
[idx
].x
[1]
386 && tj
>= params
[idx
].x
[2]
387 && tj
<= params
[idx
].x
[3])
394 * Overlap function. Determines the number of pixels in areas where
395 * the arrays overlap. Uses the reference array's notion of pixel
398 static unsigned int overlap(struct scale_cluster c
, transformation t
, int ax_count
) {
399 assert (reference_image
);
401 unsigned int result
= 0;
403 point offset
= c
.accum
->offset();
405 for (unsigned int i
= 0; i
< c
.accum
->height(); i
++)
406 for (unsigned int j
= 0; j
< c
.accum
->width(); j
++) {
408 if (ref_excluded(i
, j
, offset
, c
.ax_parameters
, ax_count
))
417 q
= (c
.input_scale
< 1.0 && interpolant
== NULL
)
418 ? t
.scaled_inverse_transform(
419 point(i
+ offset
[0], j
+ offset
[1]))
420 : t
.unscaled_inverse_transform(
421 point(i
+ offset
[0], j
+ offset
[1]));
427 * Check that the transformed coordinates are within
428 * the boundaries of array c.input, and check that the
429 * weight value in the accumulated array is nonzero,
430 * unless we know it is nonzero by virtue of the fact
431 * that it falls within the region of the original
432 * frame (e.g. when we're not increasing image
433 * extents). Also check for frame exclusion.
436 if (input_excluded(ti
, tj
, c
.ax_parameters
, ax_count
))
440 && ti
<= c
.input
->height() - 1
442 && tj
<= c
.input
->width() - 1
443 && c
.certainty
->get_pixel(i
, j
)[0] != 0)
451 * Calculate the region associated with the current multi-alignment
454 static void calculate_element_region(transformation
*t
, scale_cluster si
,
455 int local_ax_count
) {
457 unsigned int i_max
= si
.accum
->height();
458 unsigned int j_max
= si
.accum
->width();
459 point offset
= si
.accum
->offset();
461 if (si
.input_scale
< 1.0 && interpolant
== NULL
)
462 t
->begin_calculate_scaled_region(i_max
, j_max
, offset
);
464 t
->begin_calculate_unscaled_region(i_max
, j_max
, offset
);
466 for (unsigned int i
= 0; i
< i_max
; i
++)
467 for (unsigned int j
= 0; j
< j_max
; j
++) {
469 if (ref_excluded(i
, j
, offset
, si
.ax_parameters
, local_ax_count
))
474 while ((q
= t
->get_query_point((int) (i
+ offset
[0]),
475 (int) (j
+ offset
[1]))).defined()) {
480 if (input_excluded(ti
, tj
, si
.ax_parameters
, ax_count
))
484 && ti
<= si
.input
->height() - 1
486 && tj
<= si
.input
->width() - 1
487 && si
.certainty
->get_pixel(i
, j
)[0] != 0) {
494 t
->end_calculate_region();
498 * Not-quite-symmetric difference function. Determines the difference in areas
499 * where the arrays overlap. Uses the reference array's notion of pixel positions.
501 * For the purposes of determining the difference, this function divides each
502 * pixel value by the corresponding image's average pixel magnitude, unless we
505 * a) Extending the boundaries of the image, or
507 * b) following the previous frame's transform
509 * If we are doing monte-carlo pixel sampling for alignment, we
510 * typically sample a subset of available pixels; otherwise, we sample
519 transformation offset
;
526 ale_accum centroid
[2], centroid_divisor
;
527 ale_accum de_centroid
[2], de_centroid_v
, de_sum
;
534 min
= point::posinf();
535 max
= point::neginf();
539 centroid_divisor
= 0;
549 void init(transformation _offset
, ale_pos _perturb
) {
556 * Required for STL sanity.
562 run(transformation _offset
, ale_pos _perturb
) : offset() {
563 init(_offset
, _perturb
);
566 void add(const run
&_run
) {
567 result
+= _run
.result
;
568 divisor
+= _run
.divisor
;
570 for (int d
= 0; d
< 2; d
++) {
571 if (min
[d
] > _run
.min
[d
])
572 min
[d
] = _run
.min
[d
];
573 if (max
[d
] < _run
.max
[d
])
574 max
[d
] = _run
.max
[d
];
575 centroid
[d
] += _run
.centroid
[d
];
576 de_centroid
[d
] += _run
.de_centroid
[d
];
579 centroid_divisor
+= _run
.centroid_divisor
;
580 de_centroid_v
+= _run
.de_centroid_v
;
581 de_sum
+= _run
.de_sum
;
584 run(const run
&_run
) : offset() {
589 init(_run
.offset
, _run
.perturb
);
597 run
&operator=(const run
&_run
) {
602 init(_run
.offset
, _run
.perturb
);
615 ale_accum
get_error() const {
616 return pow(result
/ divisor
, 1/metric_exponent
);
619 void sample(int f
, scale_cluster c
, int i
, int j
, point t
, point u
,
620 const run
&comparison
) {
622 pixel pa
= c
.accum
->get_pixel(i
, j
);
626 ale_accum this_result
[2] = { 0, 0 };
627 ale_accum this_divisor
[2] = { 0, 0 };
629 if (interpolant
!= NULL
)
630 pixel ignored_weight
;
631 interpolant
->filtered(i
, j
, &p
[0], &ignored_weight
, 1, f
);
633 p
[0] = c
.input
->get_bl(t
);
637 p
[1] = c
.input
->get_bl(u
);
645 if (certainty_weights
== 0) {
646 weight
[0] = pixel(1, 1, 1);
647 weight
[1] = pixel(1, 1, 1);
649 weight
[0] = c
.certainty
->get_pixel(i
, j
);
650 weight
[1] = c
.certainty
->get_pixel(i
, j
);
653 if (c
.aweight
!= NULL
) {
654 weight
[0] *= c
.aweight
->get_pixel(i
, j
);
655 weight
[1] *= c
.aweight
->get_pixel(i
, j
);
659 * Update sampling area statistics
671 centroid
[0] += (weight
[0][0] + weight
[0][1] + weight
[0][2]) * i
;
672 centroid
[1] += (weight
[0][0] + weight
[0][1] + weight
[0][2]) * j
;
673 centroid_divisor
+= (weight
[0][0] + weight
[0][1] + weight
[0][2]);
676 * Determine alignment type.
679 for (int m
= 0; m
< (u
.defined() ? 2 : 1); m
++)
680 if (channel_alignment_type
== 0) {
682 * Align based on all channels.
686 for (int k
= 0; k
< 3; k
++) {
687 ale_real achan
= pa
[k
];
688 ale_real bchan
= p
[m
][k
];
690 this_result
[m
] += weight
[m
][k
] * pow(fabs(achan
- bchan
), metric_exponent
);
691 this_divisor
[m
] += weight
[m
][k
] * pow(achan
> bchan
? achan
: bchan
, metric_exponent
);
693 } else if (channel_alignment_type
== 1) {
695 * Align based on the green channel.
698 ale_real achan
= pa
[1];
699 ale_real bchan
= p
[m
][1];
701 this_result
[m
] = weight
[m
][1] * pow(fabs(achan
- bchan
), metric_exponent
);
702 this_divisor
[m
] = weight
[m
][1] * pow(achan
> bchan
? achan
: bchan
, metric_exponent
);
703 } else if (channel_alignment_type
== 2) {
705 * Align based on the sum of all channels.
712 for (int k
= 0; k
< 3; k
++) {
715 wsum
+= weight
[m
][k
] / 3;
718 this_result
[m
] = wsum
* pow(fabs(asum
- bsum
), metric_exponent
);
719 this_divisor
[m
] = wsum
* pow(asum
> bsum
? asum
: bsum
, metric_exponent
);
723 // ale_accum de = fabs(this_result[0] / this_divisor[0]
724 // - this_result[1] / this_divisor[1]);
725 ale_accum de
= fabs(this_result
[0] - this_result
[1]);
727 de_centroid
[0] += de
* i
;
728 de_centroid
[1] += de
* j
;
730 de_centroid_v
+= de
* t
.lengthto(u
);
735 result
+= (this_result
[0]);
736 divisor
+= (this_divisor
[0]);
739 void rescale(ale_pos scale
) {
740 offset
.rescale(scale
);
742 de_centroid
[0] *= scale
;
743 de_centroid
[1] *= scale
;
744 de_centroid_v
*= scale
;
747 point
get_centroid() {
748 point result
= point(centroid
[0] / centroid_divisor
, centroid
[1] / centroid_divisor
);
750 assert (finite(centroid
[0])
751 && finite(centroid
[1])
752 && (result
.defined() || centroid_divisor
== 0));
757 point
get_error_centroid() {
758 point result
= point(de_centroid
[0] / de_sum
, de_centroid
[1] / de_sum
);
763 ale_pos
get_error_perturb() {
764 ale_pos result
= de_centroid_v
/ de_sum
;
772 * When non-empty, runs.front() is best, runs.back() is
776 std::vector
<run
> runs
;
779 * old_runs stores the latest available perturbation set for
780 * each multi-alignment element.
783 typedef std::pair
<unsigned int, unsigned int> run_index
;
784 std::map
<run_index
, run
> old_runs
;
786 static void *diff_subdomain(void *args
);
788 struct subdomain_args
{
789 struct scale_cluster c
;
790 std::vector
<run
> runs
;
793 int i_min
, i_max
, j_min
, j_max
;
797 int get_current_index() const {
799 return runs
[0].offset
.get_current_index();
802 struct scale_cluster si
;
806 std::vector
<ale_pos
> perturb_multipliers
;
809 void diff(struct scale_cluster c
, ale_pos perturb
,
811 int _ax_count
, int f
) {
813 if (runs
.size() == 2)
816 runs
.push_back(run(t
, perturb
));
819 ax_count
= _ax_count
;
822 ui::get()->d2_align_sample_start();
824 if (interpolant
!= NULL
)
825 interpolant
->set_parameters(t
, c
.input
, c
.accum
->offset());
831 pthread_t
*threads
= (pthread_t
*) malloc(sizeof(pthread_t
) * N
);
832 pthread_attr_t
*thread_attr
= (pthread_attr_t
*) malloc(sizeof(pthread_attr_t
) * N
);
838 subdomain_args
*args
= new subdomain_args
[N
];
840 for (int ti
= 0; ti
< N
; ti
++) {
842 args
[ti
].runs
= runs
;
843 args
[ti
].ax_count
= ax_count
;
845 args
[ti
].i_min
= (c
.accum
->height() * ti
) / N
;
846 args
[ti
].i_max
= (c
.accum
->height() * (ti
+ 1)) / N
;
848 args
[ti
].j_max
= c
.accum
->width();
849 args
[ti
].subdomain
= ti
;
851 pthread_attr_init(&thread_attr
[ti
]);
852 pthread_attr_setdetachstate(&thread_attr
[ti
], PTHREAD_CREATE_JOINABLE
);
853 pthread_create(&threads
[ti
], &thread_attr
[ti
], diff_subdomain
, &args
[ti
]);
855 diff_subdomain(&args
[ti
]);
859 for (int ti
= 0; ti
< N
; ti
++) {
861 pthread_join(threads
[ti
], NULL
);
863 runs
.back().add(args
[ti
].runs
.back());
868 ui::get()->d2_align_sample_stop();
874 std::vector
<transformation
> t_array
;
875 std::vector
<ale_pos
> p_array
;
877 for (unsigned int r
= 0; r
< runs
.size(); r
++) {
878 t_array
.push_back(runs
[r
].offset
);
879 p_array
.push_back(runs
[r
].perturb
);
884 for (unsigned int r
= 0; r
< t_array
.size(); r
++)
885 diff(si
, p_array
[r
], t_array
[r
], ax_count
, frame
);
891 assert(runs
.size() >= 2);
892 assert(runs
[0].offset
.scale() == runs
[1].offset
.scale());
894 return (runs
[1].get_error() < runs
[0].get_error()
895 || (!finite(runs
[0].get_error()) && finite(runs
[1].get_error())));
898 diff_stat_t() : runs(), old_runs(), perturb_multipliers() {
901 run_index
get_run_index(unsigned int perturb_index
) {
902 return run_index(get_current_index(), perturb_index
);
905 run
&get_run(unsigned int perturb_index
) {
906 run_index index
= get_run_index(perturb_index
);
908 assert(old_runs
.count(index
));
909 return old_runs
[index
];
912 void rescale(ale_pos scale
, scale_cluster _si
) {
913 assert(runs
.size() == 1);
917 runs
[0].rescale(scale
);
922 void push_element() {
923 assert(runs
.size() == 1);
925 runs
[0].offset
.push_element();
930 unsigned int get_current_index() {
931 assert (runs
.size() > 0);
933 return runs
[0].offset
.get_current_index();
936 void set_current_index(unsigned int i
) {
937 assert(runs
.size() == 1);
938 runs
[0].offset
.set_current_index(i
);
942 void calculate_element_region() {
943 assert(runs
.size() == 1);
945 if (get_offset().get_current_index() > 0
946 && get_offset().is_nontrivial())
947 align::calculate_element_region(&runs
[0].offset
, si
, ax_count
);
953 diff_stat_t
&operator=(const diff_stat_t
&dst
) {
955 * Copy run information.
958 old_runs
= dst
.old_runs
;
961 * Copy diff variables
964 ax_count
= dst
.ax_count
;
966 perturb_multipliers
= dst
.perturb_multipliers
;
971 diff_stat_t(const diff_stat_t
&dst
) : runs(), old_runs(),
972 perturb_multipliers() {
976 ale_accum
get_result() {
977 assert(runs
.size() == 1);
978 return runs
[0].result
;
981 ale_accum
get_divisor() {
982 assert(runs
.size() == 1);
983 return runs
[0].divisor
;
986 transformation
get_offset() {
987 assert(runs
.size() == 1);
988 return runs
[0].offset
;
991 int operator!=(diff_stat_t
¶m
) {
992 return (get_error() != param
.get_error());
995 int operator==(diff_stat_t
¶m
) {
996 return !(operator!=(param
));
999 ale_pos
get_error_perturb() {
1000 assert(runs
.size() == 1);
1001 return runs
[0].get_error_perturb();
1004 ale_accum
get_error() const {
1005 assert(runs
.size() == 1);
1006 return runs
[0].get_error();
1011 * Get the set of transformations produced by a given perturbation
1013 void get_perturb_set(std::vector
<transformation
> *set
,
1014 ale_pos adj_p
, ale_pos adj_o
, ale_pos adj_b
,
1015 ale_pos
*current_bd
, ale_pos
*modified_bd
,
1016 std::vector
<ale_pos
> multipliers
= std::vector
<ale_pos
>()) {
1018 assert(runs
.size() == 1);
1020 transformation test_t
;
1023 * Translational or euclidean transformation
1026 for (unsigned int i
= 0; i
< 2; i
++)
1027 for (unsigned int s
= 0; s
< 2; s
++) {
1029 if (!multipliers
.size())
1030 multipliers
.push_back(1);
1032 assert(finite(multipliers
[0]));
1034 test_t
= get_offset();
1036 // test_t.eu_modify(i, (s ? -adj_p : adj_p) * multipliers[0]);
1037 test_t
.translate((i
? point(1, 0) : point(0, 1))
1038 * (s
? -adj_p
: adj_p
)
1041 test_t
.snap(adj_p
/ 2);
1043 set
->push_back(test_t
);
1044 multipliers
.erase(multipliers
.begin());
1048 if (alignment_class
> 0)
1049 for (unsigned int s
= 0; s
< 2; s
++) {
1051 if (!multipliers
.size())
1052 multipliers
.push_back(1);
1054 assert(multipliers
.size());
1055 assert(finite(multipliers
[0]));
1057 if (!(adj_o
* multipliers
[0] < rot_max
))
1060 ale_pos adj_s
= (s
? 1 : -1) * adj_o
* multipliers
[0];
1062 test_t
= get_offset();
1064 run_index ori
= get_run_index(set
->size());
1065 point centroid
= point::undefined();
1067 if (!old_runs
.count(ori
))
1068 ori
= get_run_index(0);
1070 if (!centroid
.finite() && old_runs
.count(ori
)) {
1071 centroid
= old_runs
[ori
].get_error_centroid();
1073 if (!centroid
.finite())
1074 centroid
= old_runs
[ori
].get_centroid();
1076 centroid
*= test_t
.scale()
1077 / old_runs
[ori
].offset
.scale();
1080 if (!centroid
.finite() && !test_t
.is_projective()) {
1081 test_t
.eu_modify(2, adj_s
);
1082 } else if (!centroid
.finite()) {
1083 centroid
= point(si
.input
->height() / 2,
1084 si
.input
->width() / 2);
1086 test_t
.rotate(centroid
+ si
.accum
->offset(),
1089 test_t
.rotate(centroid
+ si
.accum
->offset(),
1093 test_t
.snap(adj_p
/ 2);
1095 set
->push_back(test_t
);
1096 multipliers
.erase(multipliers
.begin());
1099 if (alignment_class
== 2) {
1102 * Projective transformation
1105 for (unsigned int i
= 0; i
< 4; i
++)
1106 for (unsigned int j
= 0; j
< 2; j
++)
1107 for (unsigned int s
= 0; s
< 2; s
++) {
1109 if (!multipliers
.size())
1110 multipliers
.push_back(1);
1112 assert(multipliers
.size());
1113 assert(finite(multipliers
[0]));
1115 ale_pos adj_s
= (s
? -1 : 1) * adj_p
* multipliers
[0];
1117 test_t
= get_offset();
1119 if (perturb_type
== 0)
1120 test_t
.gpt_modify(j
, i
, adj_s
);
1121 else if (perturb_type
== 1)
1122 test_t
.gr_modify(j
, i
, adj_s
);
1126 test_t
.snap(adj_p
/ 2);
1128 set
->push_back(test_t
);
1129 multipliers
.erase(multipliers
.begin());
1138 if (bda_mult
!= 0 && adj_b
!= 0) {
1140 for (unsigned int d
= 0; d
< get_offset().bd_count(); d
++)
1141 for (unsigned int s
= 0; s
< 2; s
++) {
1143 if (!multipliers
.size())
1144 multipliers
.push_back(1);
1146 assert (multipliers
.size());
1147 assert (finite(multipliers
[0]));
1149 ale_pos adj_s
= (s
? -1 : 1) * adj_b
* multipliers
[0];
1151 if (bda_rate
> 0 && fabs(modified_bd
[d
] + adj_s
- current_bd
[d
]) > bda_rate
)
1154 transformation test_t
= get_offset();
1156 test_t
.bd_modify(d
, adj_s
);
1158 set
->push_back(test_t
);
1164 assert(runs
.size() == 2);
1170 assert(runs
.size() == 2);
1174 void perturb_test(ale_pos perturb
, ale_pos adj_p
, ale_pos adj_o
, ale_pos adj_b
,
1175 ale_pos
*current_bd
, ale_pos
*modified_bd
, int stable
) {
1177 assert(runs
.size() == 1);
1179 std::vector
<transformation
> t_set
;
1181 if (perturb_multipliers
.size() == 0) {
1182 get_perturb_set(&t_set
, adj_p
, adj_o
, adj_b
,
1183 current_bd
, modified_bd
);
1185 for (unsigned int i
= 0; i
< t_set
.size(); i
++) {
1186 diff_stat_t test
= *this;
1188 test
.diff(si
, perturb
, t_set
[i
], ax_count
, frame
);
1192 if (finite(adj_p
/ test
.get_error_perturb()))
1193 perturb_multipliers
.push_back(adj_p
/ test
.get_error_perturb());
1195 perturb_multipliers
.push_back(1);
1202 get_perturb_set(&t_set
, adj_p
, adj_o
, adj_b
, current_bd
, modified_bd
,
1203 perturb_multipliers
);
1205 int found_unreliable
= 1;
1206 std::vector
<int> tested(t_set
.size(), 0);
1208 for (unsigned int i
= 0; i
< t_set
.size(); i
++) {
1209 run_index ori
= get_run_index(i
);
1212 * Check for stability
1215 && old_runs
.count(ori
)
1216 && old_runs
[ori
].offset
== t_set
[i
])
1220 std::vector
<ale_pos
> perturb_multipliers_original
= perturb_multipliers
;
1222 while (found_unreliable
) {
1224 found_unreliable
= 0;
1226 for (unsigned int i
= 0; i
< t_set
.size(); i
++) {
1231 diff(si
, perturb
, t_set
[i
], ax_count
, frame
);
1233 if (!(i
< perturb_multipliers
.size())
1234 || !finite(perturb_multipliers
[i
])) {
1236 perturb_multipliers
.resize(i
+ 1);
1238 perturb_multipliers
[i
] =
1239 adj_p
/ runs
[1].get_error_perturb();
1241 if (finite(perturb_multipliers
[i
]))
1242 found_unreliable
= 1;
1247 run_index ori
= get_run_index(i
);
1249 if (old_runs
.count(ori
) == 0)
1250 old_runs
.insert(std::pair
<run_index
, run
>(ori
, runs
[1]));
1252 old_runs
[ori
] = runs
[1];
1254 perturb_multipliers
[i
] = perturb_multipliers_original
[i
]
1255 * adj_p
/ runs
[1].get_error_perturb();
1257 if (!finite(perturb_multipliers
[i
]))
1258 perturb_multipliers
[i
] = 1;
1263 && runs
[1].get_error() < runs
[0].get_error()
1264 && perturb_multipliers
[i
]
1265 / perturb_multipliers_original
[i
] < 2) {
1273 if (runs
.size() > 1)
1276 if (!found_unreliable
)
1282 * Attempt to make the current element non-trivial, by finding a nearby
1283 * alignment admitting a non-empty element region.
1285 void make_element_nontrivial(ale_pos adj_p
, ale_pos adj_o
) {
1286 assert(runs
.size() == 1);
1288 transformation
*t
= &runs
[0].offset
;
1290 if (t
->is_nontrivial())
1293 calculate_element_region();
1295 if (t
->is_nontrivial())
1298 std::vector
<transformation
> t_set
;
1299 get_perturb_set(&t_set
, adj_p
, adj_o
, 0, NULL
, NULL
);
1301 for (unsigned int i
= 0; i
< t_set
.size(); i
++) {
1303 align::calculate_element_region(&t_set
[i
], si
, ax_count
);
1305 if (t_set
[i
].is_nontrivial()) {
1316 * Adjust exposure for an aligned frame B against reference A.
1318 * Expects full-LOD images.
1320 * Note: This method does not use any weighting, by certainty or
1321 * otherwise, in the first exposure registration pass, as any bias of
1322 * weighting according to color may also bias the exposure registration
1323 * result; it does use weighting, including weighting by certainty
1324 * (even if certainty weighting is not specified), in the second pass,
1325 * under the assumption that weighting by certainty improves handling
1326 * of out-of-range highlights, and that bias of exposure measurements
1327 * according to color may generally be less harmful after spatial
1328 * registration has been performed.
1330 static void set_exposure_ratio(unsigned int m
, struct scale_cluster c
,
1331 transformation t
, int ax_count
, int pass_number
) {
1333 if (_exp_register
== 2) {
1335 * Use metadata only.
1337 ale_real gain_multiplier
= image_rw::exp(m
).get_gain_multiplier();
1338 pixel multiplier
= pixel(gain_multiplier
, gain_multiplier
, gain_multiplier
);
1340 image_rw::exp(m
).set_multiplier(multiplier
);
1341 ui::get()->exp_multiplier(multiplier
[0],
1348 pixel_accum asum
, bsum
;
1350 point offset
= c
.accum
->offset();
1352 for (unsigned int i
= 0; i
< c
.accum
->height(); i
++)
1353 for (unsigned int j
= 0; j
< c
.accum
->width(); j
++) {
1355 if (ref_excluded(i
, j
, offset
, c
.ax_parameters
, ax_count
))
1364 q
= (c
.input_scale
< 1.0 && interpolant
== NULL
)
1365 ? t
.scaled_inverse_transform(
1366 point(i
+ offset
[0], j
+ offset
[1]))
1367 : t
.unscaled_inverse_transform(
1368 point(i
+ offset
[0], j
+ offset
[1]));
1371 * Check that the transformed coordinates are within
1372 * the boundaries of array c.input, that they are not
1373 * subject to exclusion, and that the weight value in
1374 * the accumulated array is nonzero.
1377 if (input_excluded(q
[0], q
[1], c
.ax_parameters
, ax_count
))
1381 && q
[0] <= c
.input
->height() - 1
1383 && q
[1] <= c
.input
->width() - 1
1384 && c
.certainty
->get_pixel(i
, j
).minabs_norm() != 0) {
1385 pixel a
= c
.accum
->get_pixel(i
, j
);
1388 b
= c
.input
->get_bl(q
);
1390 pixel weight
= ((c
.aweight
&& pass_number
)
1391 ? c
.aweight
->get_pixel(i
, j
)
1394 ? c
.certainty
->get_pixel(i
, j
)
1402 // std::cerr << (asum / bsum) << " ";
1404 pixel_accum new_multiplier
;
1406 new_multiplier
= asum
/ bsum
* image_rw::exp(m
).get_multiplier();
1408 if (finite(new_multiplier
[0])
1409 && finite(new_multiplier
[1])
1410 && finite(new_multiplier
[2])) {
1411 image_rw::exp(m
).set_multiplier(new_multiplier
);
1412 ui::get()->exp_multiplier(new_multiplier
[0],
1419 * Copy all ax parameters.
1421 static exclusion
*copy_ax_parameters(int local_ax_count
, exclusion
*source
) {
1423 exclusion
*dest
= (exclusion
*) malloc(local_ax_count
* sizeof(exclusion
));
1428 ui::get()->memory_error("exclusion regions");
1430 for (int idx
= 0; idx
< local_ax_count
; idx
++)
1431 dest
[idx
] = source
[idx
];
1437 * Copy ax parameters according to frame.
1439 static exclusion
*filter_ax_parameters(int frame
, int *local_ax_count
) {
1441 exclusion
*dest
= (exclusion
*) malloc(ax_count
* sizeof(exclusion
));
1446 ui::get()->memory_error("exclusion regions");
1448 *local_ax_count
= 0;
1450 for (int idx
= 0; idx
< ax_count
; idx
++) {
1451 if (ax_parameters
[idx
].x
[4] > frame
1452 || ax_parameters
[idx
].x
[5] < frame
)
1455 dest
[*local_ax_count
] = ax_parameters
[idx
];
1457 (*local_ax_count
)++;
1463 static void scale_ax_parameters(int local_ax_count
, exclusion
*ax_parameters
,
1464 ale_pos ref_scale
, ale_pos input_scale
) {
1465 for (int i
= 0; i
< local_ax_count
; i
++) {
1466 ale_pos scale
= (ax_parameters
[i
].type
== exclusion::RENDER
)
1470 for (int n
= 0; n
< 6; n
++) {
1471 ax_parameters
[i
].x
[n
] = ax_parameters
[i
].x
[n
] * scale
;
1477 * Prepare the next level of detail for ordinary images.
1479 static const image
*prepare_lod(const image
*current
) {
1480 if (current
== NULL
)
1483 return current
->scale_by_half("prepare_lod");
1487 * Prepare the next level of detail for definition maps.
1489 static const image
*prepare_lod_def(const image
*current
) {
1490 if (current
== NULL
)
1493 return current
->defined_scale_by_half("prepare_lod_def");
1497 * Initialize scale cluster data structures.
1500 static void init_nl_cluster(struct scale_cluster
*sc
) {
1503 static struct scale_cluster
*init_clusters(int frame
, ale_real scale_factor
,
1504 const image
*input_frame
, unsigned int steps
,
1505 int *local_ax_count
) {
1508 * Allocate memory for the array.
1511 struct scale_cluster
*scale_clusters
=
1512 (struct scale_cluster
*) malloc(steps
* sizeof(struct scale_cluster
));
1514 assert (scale_clusters
);
1516 if (!scale_clusters
)
1517 ui::get()->memory_error("alignment");
1520 * Prepare images and exclusion regions for the highest level
1524 scale_clusters
[0].accum
= reference_image
;
1526 ui::get()->constructing_lod_clusters(0.0);
1527 scale_clusters
[0].input_scale
= scale_factor
;
1528 if (scale_factor
< 1.0 && interpolant
== NULL
)
1529 scale_clusters
[0].input
= input_frame
->scale(scale_factor
, "alignment");
1531 scale_clusters
[0].input
= input_frame
;
1533 scale_clusters
[0].certainty
= reference_defined
->clone("certainty");
1534 scale_clusters
[0].aweight
= alignment_weights
;
1535 scale_clusters
[0].ax_parameters
= filter_ax_parameters(frame
, local_ax_count
);
1538 * Incorporate input frame certainty.
1540 for (int i
= 0; i
< scale_clusters
[0].certainty
->height(); i
++)
1541 for (int j
= 0; j
< scale_clusters
[0].certainty
->width(); j
++) {
1542 scale_clusters
[0].certainty
->pix(i
, j
) *=
1543 scale_clusters
[0].exp().confidence(scale_clusters
[0].accum
->pix(i
, j
));
1546 scale_ax_parameters(*local_ax_count
, scale_clusters
[0].ax_parameters
, scale_factor
,
1547 (scale_factor
< 1.0 && interpolant
== NULL
) ? scale_factor
: 1);
1549 init_nl_cluster(&(scale_clusters
[0]));
1552 * Prepare reduced-detail images and exclusion
1556 for (unsigned int step
= 1; step
< steps
; step
++) {
1557 ui::get()->constructing_lod_clusters(step
);
1558 scale_clusters
[step
].accum
= prepare_lod(scale_clusters
[step
- 1].accum
);
1559 scale_clusters
[step
].certainty
= prepare_lod_def(scale_clusters
[step
- 1].certainty
);
1560 scale_clusters
[step
].aweight
= prepare_lod_def(scale_clusters
[step
- 1].aweight
);
1561 scale_clusters
[step
].ax_parameters
1562 = copy_ax_parameters(*local_ax_count
, scale_clusters
[step
- 1].ax_parameters
);
1564 double sf
= scale_clusters
[step
- 1].input_scale
/ 2;
1565 scale_clusters
[step
].input_scale
= sf
;
1567 if (sf
>= 1.0 || interpolant
!= NULL
) {
1568 scale_clusters
[step
].input
= scale_clusters
[step
- 1].input
;
1569 scale_ax_parameters(*local_ax_count
, scale_clusters
[step
].ax_parameters
, 0.5, 1);
1570 } else if (sf
> 0.5) {
1571 scale_clusters
[step
].input
= scale_clusters
[step
- 1].input
->scale(sf
, "alignment");
1572 scale_ax_parameters(*local_ax_count
, scale_clusters
[step
].ax_parameters
, 0.5, sf
);
1574 scale_clusters
[step
].input
= scale_clusters
[step
- 1].input
->scale(0.5, "alignment");
1575 scale_ax_parameters(*local_ax_count
, scale_clusters
[step
].ax_parameters
, 0.5, 0.5);
1578 init_nl_cluster(&(scale_clusters
[step
]));
1581 return scale_clusters
;
1585 * Destroy the first element in the scale cluster data structure.
1587 static void final_clusters(struct scale_cluster
*scale_clusters
, ale_real scale_factor
,
1588 unsigned int steps
) {
1590 if (scale_clusters
[0].input_scale
< 1.0)
1591 delete scale_clusters
[0].input
;
1593 free((void *)scale_clusters
[0].ax_parameters
);
1595 delete scale_clusters
[0].certainty
;
1597 for (unsigned int step
= 1; step
< steps
; step
++) {
1598 delete scale_clusters
[step
].accum
;
1599 delete scale_clusters
[step
].certainty
;
1600 delete scale_clusters
[step
].aweight
;
1602 if (scale_clusters
[step
].input_scale
< 1.0)
1603 delete scale_clusters
[step
].input
;
1605 free((void *)scale_clusters
[step
].ax_parameters
);
1608 free(scale_clusters
);
1612 * Calculate the centroid of a control point for the set of frames
1613 * having index lower than m. Divide by any scaling of the output.
1615 static point
unscaled_centroid(unsigned int m
, unsigned int p
) {
1618 point
point_sum(0, 0);
1619 ale_accum divisor
= 0;
1621 for(unsigned int j
= 0; j
< m
; j
++) {
1622 point pp
= cp_array
[p
][j
];
1625 point_sum
+= kept_t
[j
].transform_unscaled(pp
)
1626 / kept_t
[j
].scale();
1632 return point::undefined();
1634 return point_sum
/ divisor
;
1638 * Calculate centroid of this frame, and of all previous frames,
1639 * from points common to both sets.
1641 static void centroids(unsigned int m
, point
*current
, point
*previous
) {
1643 * Calculate the translation
1645 point
other_centroid(0, 0);
1646 point
this_centroid(0, 0);
1647 ale_pos divisor
= 0;
1649 for (unsigned int i
= 0; i
< cp_count
; i
++) {
1650 point other_c
= unscaled_centroid(m
, i
);
1651 point this_c
= cp_array
[i
][m
];
1653 if (!other_c
.defined() || !this_c
.defined())
1656 other_centroid
+= other_c
;
1657 this_centroid
+= this_c
;
1663 *current
= point::undefined();
1664 *previous
= point::undefined();
1668 *current
= this_centroid
/ divisor
;
1669 *previous
= other_centroid
/ divisor
;
1673 * Calculate the RMS error of control points for frame m, with
1674 * transformation t, against control points for earlier frames.
1676 static ale_accum
cp_rms_error(unsigned int m
, transformation t
) {
1680 ale_accum divisor
= 0;
1682 for (unsigned int i
= 0; i
< cp_count
; i
++)
1683 for (unsigned int j
= 0; j
< m
; j
++) {
1684 const point
*p
= cp_array
[i
];
1685 point p_ref
= kept_t
[j
].transform_unscaled(p
[j
]);
1686 point p_cur
= t
.transform_unscaled(p
[m
]);
1688 if (!p_ref
.defined() || !p_cur
.defined())
1691 err
+= p_ref
.lengthtosq(p_cur
);
1695 return sqrt(err
/ divisor
);
1699 * Implement new delta --follow semantics.
1701 * If we have a transformation T such that
1703 * prev_final == T(prev_init)
1707 * current_init_follow == T(current_init)
1709 * We can calculate T as follows:
1711 * T == prev_final(prev_init^-1)
1713 * Where ^-1 is the inverse operator.
1715 static transformation
follow(element_t
*element
, transformation offset
, int lod
) {
1717 transformation new_offset
= offset
;
1720 * Criteria for using following.
1723 if (!element
->old_is_default
&& !element
->is_default
&&
1724 default_initial_alignment_type
== 1) {
1726 * Ensure that the lod for the old initial and final
1727 * alignments are equal to the lod for the new initial
1731 ui::get()->following();
1733 element
->old_final_alignment
.rescale (1 / pow(2, lod
));
1734 element
->old_initial_alignment
.rescale(1 / pow(2, lod
- element
->old_lod
));
1736 for (offset
.set_current_index(0),
1737 element
->old_initial_alignment
.set_current_index(0),
1738 element
->old_final_alignment
.set_current_index(0),
1739 new_offset
.set_current_index(0);
1741 offset
.get_current_index() < _ma_card
;
1743 offset
.push_element(),
1744 new_offset
.push_element()) {
1746 if (alignment_class
== 0) {
1748 * Translational transformations
1751 ale_pos t0
= -element
->old_initial_alignment
.eu_get(0)
1752 + element
->old_final_alignment
.eu_get(0);
1753 ale_pos t1
= -element
->old_initial_alignment
.eu_get(1)
1754 + element
->old_final_alignment
.eu_get(1);
1756 new_offset
.eu_modify(0, t0
);
1757 new_offset
.eu_modify(1, t1
);
1759 } else if (alignment_class
== 1) {
1761 * Euclidean transformations
1764 ale_pos t2
= -element
->old_initial_alignment
.eu_get(2)
1765 + element
->old_final_alignment
.eu_get(2);
1767 new_offset
.eu_modify(2, t2
);
1769 point
p( offset
.scaled_height()/2 + offset
.eu_get(0) - element
->old_initial_alignment
.eu_get(0),
1770 offset
.scaled_width()/2 + offset
.eu_get(1) - element
->old_initial_alignment
.eu_get(1) );
1772 p
= element
->old_final_alignment
.transform_scaled(p
);
1774 new_offset
.eu_modify(0, p
[0] - offset
.scaled_height()/2 - offset
.eu_get(0));
1775 new_offset
.eu_modify(1, p
[1] - offset
.scaled_width()/2 - offset
.eu_get(1));
1777 } else if (alignment_class
== 2) {
1779 * Projective transformations
1784 p
[0] = element
->old_final_alignment
.transform_scaled(element
->old_initial_alignment
1785 . scaled_inverse_transform(offset
.get_current_element().transform_scaled(point( 0 , 0 ))));
1786 p
[1] = element
->old_final_alignment
.transform_scaled(element
->old_initial_alignment
1787 . scaled_inverse_transform(offset
.get_current_element().transform_scaled(point(offset
.scaled_height(), 0 ))));
1788 p
[2] = element
->old_final_alignment
.transform_scaled(element
->old_initial_alignment
1789 . scaled_inverse_transform(offset
.get_current_element().transform_scaled(point(offset
.scaled_height(), offset
.scaled_width()))));
1790 p
[3] = element
->old_final_alignment
.transform_scaled(element
->old_initial_alignment
1791 . scaled_inverse_transform(offset
.get_current_element().transform_scaled(point( 0 , offset
.scaled_width()))));
1793 new_offset
.gpt_set(p
);
1797 ui::get()->set_offset(offset
);
1803 static void test_global(diff_stat_t
*here
, scale_cluster si
, transformation t
,
1804 int local_ax_count
, int m
, ale_pos local_gs_mo
, ale_pos perturb
) {
1806 diff_stat_t
test(*here
);
1808 test
.diff(si
, perturb
, t
, local_ax_count
, m
);
1810 unsigned int ovl
= overlap(si
, t
, local_ax_count
);
1812 if (ovl
>= local_gs_mo
&& test
.better()) {
1815 ui::get()->set_match(here
->get_error());
1816 ui::get()->set_offset(here
->get_offset());
1824 * Get the set of global transformations for a given density
1826 static void test_globals(diff_stat_t
*here
,
1827 scale_cluster si
, transformation t
, int local_gs
, ale_pos adj_p
,
1828 int local_ax_count
, int m
, ale_pos local_gs_mo
, ale_pos perturb
) {
1830 transformation offset
= t
;
1834 transformation offset_p
= offset
;
1836 if (!offset_p
.is_projective())
1837 offset_p
.eu_to_gpt();
1839 min
= max
= offset_p
.gpt_get(0);
1840 for (int p_index
= 1; p_index
< 4; p_index
++) {
1841 point p
= offset_p
.gpt_get(p_index
);
1852 point inner_min_t
= -min
;
1853 point inner_max_t
= -max
+ point(si
.accum
->height(), si
.accum
->width());
1854 point outer_min_t
= -max
+ point(adj_p
- 1, adj_p
- 1);
1855 point outer_max_t
= point(si
.accum
->height(), si
.accum
->width()) - point(adj_p
, adj_p
);
1857 if (local_gs
== 1 || local_gs
== 3 || local_gs
== 4 || local_gs
== 6) {
1863 for (ale_pos i
= inner_min_t
[0]; i
<= inner_max_t
[0]; i
+= adj_p
)
1864 for (ale_pos j
= inner_min_t
[1]; j
<= inner_max_t
[1]; j
+= adj_p
) {
1865 transformation test_t
= offset
;
1866 test_t
.translate(point(i
, j
));
1867 test_global(here
, si
, test_t
, local_ax_count
, m
, local_gs_mo
, perturb
);
1871 if (local_gs
== 2 || local_gs
== 3 || local_gs
== -1 || local_gs
== 6) {
1877 for (ale_pos i
= outer_min_t
[0]; i
<= outer_max_t
[0]; i
+= adj_p
)
1878 for (ale_pos j
= outer_min_t
[1]; j
< inner_min_t
[1]; j
+= adj_p
) {
1879 transformation test_t
= offset
;
1880 test_t
.translate(point(i
, j
));
1881 test_global(here
, si
, test_t
, local_ax_count
, m
, local_gs_mo
, perturb
);
1883 for (ale_pos i
= outer_min_t
[0]; i
<= outer_max_t
[0]; i
+= adj_p
)
1884 for (ale_pos j
= outer_max_t
[1]; j
> inner_max_t
[1]; j
-= adj_p
) {
1885 transformation test_t
= offset
;
1886 test_t
.translate(point(i
, j
));
1887 test_global(here
, si
, test_t
, local_ax_count
, m
, local_gs_mo
, perturb
);
1889 for (ale_pos i
= outer_min_t
[0]; i
< inner_min_t
[0]; i
+= adj_p
)
1890 for (ale_pos j
= outer_min_t
[1]; j
<= outer_max_t
[1]; j
+= adj_p
) {
1891 transformation test_t
= offset
;
1892 test_t
.translate(point(i
, j
));
1893 test_global(here
, si
, test_t
, local_ax_count
, m
, local_gs_mo
, perturb
);
1895 for (ale_pos i
= outer_max_t
[0]; i
> inner_max_t
[0]; i
-= adj_p
)
1896 for (ale_pos j
= outer_min_t
[1]; j
<= outer_max_t
[1]; j
+= adj_p
) {
1897 transformation test_t
= offset
;
1898 test_t
.translate(point(i
, j
));
1899 test_global(here
, si
, test_t
, local_ax_count
, m
, local_gs_mo
, perturb
);
1904 static void get_translational_set(std::vector
<transformation
> *set
,
1905 transformation t
, ale_pos adj_p
) {
1909 transformation offset
= t
;
1910 transformation test_t
;
1912 for (int i
= 0; i
< 2; i
++)
1913 for (adj_s
= -adj_p
; adj_s
<= adj_p
; adj_s
+= 2 * adj_p
) {
1917 test_t
.translate(i
? point(adj_s
, 0) : point(0, adj_s
));
1919 set
->push_back(test_t
);
1923 static int threshold_ok(ale_accum error
) {
1924 if ((1 - error
) * 100 >= match_threshold
)
1927 if (!(match_threshold
>= 0))
1934 * Align frame m against the reference.
1936 * XXX: the transformation class currently combines ordinary
1937 * transformations with scaling. This is somewhat convenient for
1938 * some things, but can also be confusing. This method, _align(), is
1939 * one case where special care must be taken to ensure that the scale
1940 * is always set correctly (by using the 'rescale' method).
1942 static diff_stat_t
_align(int m
, int local_gs
, element_t
*element
) {
1944 const image
*input_frame
= element
->input_frame
;
1947 * Local upper/lower data, possibly dependent on image
1951 ale_pos local_lower
, local_upper
, local_gs_mo
;
1954 * Select the minimum dimension as the reference.
1957 ale_pos reference_size
= input_frame
->height();
1958 if (input_frame
->width() < reference_size
)
1959 reference_size
= input_frame
->width();
1960 ale_pos reference_area
= input_frame
->height()
1961 * input_frame
->width();
1963 if (perturb_lower_percent
)
1964 local_lower
= perturb_lower
1969 local_lower
= perturb_lower
;
1971 if (perturb_upper_percent
)
1972 local_upper
= perturb_upper
1977 local_upper
= perturb_upper
;
1979 local_upper
= pow(2, floor(log(local_upper
) / log(2)));
1982 local_gs_mo
= _gs_mo
1987 local_gs_mo
= _gs_mo
;
1990 * Logarithms aren't exact, so we divide repeatedly to discover
1991 * how many steps will occur, and pass this information to the
1996 double step_variable
= local_upper
;
1997 while (step_variable
>= local_lower
) {
2002 ui::get()->set_steps(step_count
);
2004 ale_pos perturb
= local_upper
;
2008 kept_t
[latest
] = latest_t
;
2009 kept_ok
[latest
] = latest_ok
;
2013 * Maximum level-of-detail. Use a level of detail at most
2014 * 2^lod_diff finer than the adjustment resolution. lod_diff
2015 * is a synonym for lod_max.
2018 const int lod_diff
= lod_max
;
2021 * Determine how many levels of detail should be prepared.
2025 * Plain (unsigned int) casting seems to be broken in some cases.
2028 unsigned int steps
= (perturb
> pow(2, lod_max
))
2029 ? (unsigned int) lrint(log(perturb
) / log(2)) - lod_max
+ 1 : 1;
2032 * Prepare multiple levels of detail.
2036 struct scale_cluster
*scale_clusters
= init_clusters(m
,
2037 scale_factor
, input_frame
, steps
,
2041 * Initialize variables used in the main loop.
2047 * Initialize the default initial transform
2050 if (default_initial_alignment_type
== 0) {
2053 * Follow the transformation of the original frame,
2054 * setting new image dimensions.
2057 // element->default_initial_alignment = orig_t;
2058 element
->default_initial_alignment
.set_current_element(orig_t
.get_element(0));
2059 element
->default_initial_alignment
.set_dimensions(input_frame
);
2061 } else if (default_initial_alignment_type
== 1)
2064 * Follow previous transformation, setting new image
2068 element
->default_initial_alignment
.set_dimensions(input_frame
);
2073 element
->old_is_default
= element
->is_default
;
2076 * Scale default initial transform for lod
2079 element
->default_initial_alignment
.rescale(1 / pow(2, lod
));
2082 * Set the default transformation.
2085 transformation offset
= element
->default_initial_alignment
;
2088 * Load any file-specified transformations
2091 for (offset
.set_current_index(0);
2092 offset
.get_current_index() < _ma_card
;
2093 offset
.push_element()) {
2095 offset
= tload_next(tload
, alignment_class
== 2,
2097 &element
->is_default
,
2098 offset
.get_current_index() == 0);
2102 offset
.set_current_index(0);
2104 ui::get()->set_offset(offset
);
2109 * Apply following logic
2112 transformation new_offset
= follow(element
, offset
, lod
);
2114 new_offset
.set_current_index(0);
2116 element
->old_initial_alignment
= offset
;
2117 element
->old_lod
= lod
;
2118 offset
= new_offset
;
2121 element
->old_initial_alignment
= offset
;
2122 element
->old_lod
= lod
;
2125 struct scale_cluster si
= scale_clusters
[lod
];
2128 * Projective adjustment value
2131 ale_pos adj_p
= (perturb
>= pow(2, lod_diff
))
2132 ? pow(2, lod_diff
) : (double) perturb
;
2135 * Orientational adjustment value in degrees.
2137 * Since rotational perturbation is now specified as an
2138 * arclength, we have to convert.
2141 ale_pos adj_o
= 2 * perturb
2142 / sqrt(pow(scale_clusters
[0].input
->height(), 2)
2143 + pow(scale_clusters
[0].input
->width(), 2))
2148 * Barrel distortion adjustment value
2151 ale_pos adj_b
= perturb
* bda_mult
;
2154 * Global search overlap requirements.
2157 local_gs_mo
/= pow(pow(2, lod
), 2);
2160 * Pre-alignment exposure adjustment
2163 if (_exp_register
) {
2164 ui::get()->exposure_1();
2165 transformation o
= offset
;
2166 for (int k
= lod
; k
> 0; k
--)
2168 set_exposure_ratio(m
, scale_clusters
[0], o
, local_ax_count
, 0);
2172 * Alignment statistics.
2178 * Current difference (error) value
2181 ui::get()->prematching();
2182 here
.diff(si
, perturb
, offset
, local_ax_count
, m
);
2183 ui::get()->set_match(here
.get_error());
2186 * Current and modified barrel distortion parameters
2189 ale_pos current_bd
[BARREL_DEGREE
];
2190 ale_pos modified_bd
[BARREL_DEGREE
];
2191 offset
.bd_get(current_bd
);
2192 offset
.bd_get(modified_bd
);
2195 * Translational global search step
2198 if (perturb
>= local_lower
&& local_gs
!= 0 && local_gs
!= 5
2199 && (local_gs
!= 6 || element
->is_default
)) {
2201 ui::get()->global_alignment(perturb
, lod
);
2202 ui::get()->gs_mo(local_gs_mo
);
2204 test_globals(&here
, si
, here
.get_offset(), local_gs
, adj_p
,
2205 local_ax_count
, m
, local_gs_mo
, perturb
);
2207 ui::get()->set_match(here
.get_error());
2208 ui::get()->set_offset(here
.get_offset());
2212 * Control point alignment
2215 if (local_gs
== 5) {
2217 transformation o
= here
.get_offset();
2219 for (int k
= lod
; k
> 0; k
--)
2223 * Determine centroid data
2226 point current
, previous
;
2227 centroids(m
, ¤t
, &previous
);
2229 if (current
.defined() && previous
.defined()) {
2231 o
.set_dimensions(input_frame
);
2232 o
.translate((previous
- current
) * o
.scale());
2237 * Determine rotation for alignment classes other than translation.
2240 ale_accum lowest_error
= cp_rms_error(m
, o
);
2242 ale_pos rot_lower
= 2 * local_lower
2243 / sqrt(pow(scale_clusters
[0].input
->height(), 2)
2244 + pow(scale_clusters
[0].input
->width(), 2))
2248 if (alignment_class
> 0)
2249 for (ale_pos rot
= 30; rot
> rot_lower
; rot
/= 2)
2250 for (ale_pos srot
= -rot
; srot
< rot
* 1.5; srot
+= rot
* 2) {
2251 int is_improved
= 1;
2252 while (is_improved
) {
2254 transformation test_t
= o
;
2256 * XXX: is this right?
2258 test_t
.rotate(current
* o
.scale(), srot
);
2259 ale_pos test_v
= cp_rms_error(m
, test_t
);
2261 if (test_v
< lowest_error
) {
2262 lowest_error
= test_v
;
2271 * Determine projective parameters through a local
2275 if (alignment_class
== 2) {
2276 ale_accum adj_p
= lowest_error
;
2278 if (adj_p
< local_lower
)
2279 adj_p
= local_lower
;
2281 while (adj_p
>= local_lower
) {
2282 transformation test_t
= o
;
2283 int is_improved
= 1;
2287 while (is_improved
) {
2290 for (int i
= 0; i
< 4; i
++)
2291 for (int j
= 0; j
< 2; j
++)
2292 for (adj_s
= -adj_p
; adj_s
<= adj_p
; adj_s
+= 2 * adj_p
) {
2296 if (perturb_type
== 0)
2297 test_t
.gpt_modify(j
, i
, adj_s
);
2298 else if (perturb_type
== 1)
2299 test_t
.gr_modify(j
, i
, adj_s
);
2303 test_v
= cp_rms_error(m
, test_t
);
2305 if (test_v
< lowest_error
) {
2306 lowest_error
= test_v
;
2318 set_exposure_ratio(m
, scale_clusters
[0], o
, local_ax_count
, 0);
2320 for (int k
= lod
; k
> 0; k
--)
2323 here
.diff(si
, perturb
, o
, local_ax_count
, m
);
2325 ui::get()->set_match(here
.get_error());
2326 ui::get()->set_offset(here
.get_offset());
2330 * Announce perturbation size
2333 ui::get()->aligning(perturb
, lod
);
2336 * Run initial tests to get perturbation multipliers and error
2340 std::vector
<transformation
> t_set
;
2342 here
.get_perturb_set(&t_set
, adj_p
, adj_o
, adj_b
, current_bd
, modified_bd
);
2345 * Perturbation adjustment loop.
2348 int stable_count
= 0;
2350 while (perturb
>= local_lower
) {
2353 * Orientational adjustment value in degrees.
2355 * Since rotational perturbation is now specified as an
2356 * arclength, we have to convert.
2359 ale_pos adj_o
= 2 * perturb
2360 / sqrt(pow(scale_clusters
[0].input
->height(), 2)
2361 + pow(scale_clusters
[0].input
->width(), 2))
2366 * Barrel distortion adjustment value
2369 ale_pos adj_b
= perturb
* bda_mult
;
2371 diff_stat_t old_here
= here
;
2373 here
.perturb_test(perturb
, adj_p
, adj_o
, adj_b
, current_bd
, modified_bd
,
2376 if (here
.get_offset() == old_here
.get_offset())
2381 if (stable_count
== 3) {
2385 here
.calculate_element_region();
2387 if (here
.get_current_index() + 1 < _ma_card
) {
2388 here
.push_element();
2389 here
.make_element_nontrivial(adj_p
, adj_o
);
2390 element
->is_primary
= 0;
2393 here
.set_current_index(0);
2395 element
->is_primary
= 1;
2402 * Work with images twice as large
2406 si
= scale_clusters
[lod
];
2409 * Rescale the transforms.
2412 here
.rescale(2, si
);
2413 element
->default_initial_alignment
.rescale(2);
2423 ui::get()->alignment_perturbation_level(perturb
, lod
);
2428 ui::get()->set_match(here
.get_error());
2429 ui::get()->set_offset(here
.get_offset());
2432 here
.set_current_index(0);
2434 offset
= here
.get_offset();
2437 here
.rescale(pow(2, lod
), scale_clusters
[0]);
2438 element
->default_initial_alignment
.rescale(pow(2, lod
));
2442 * Post-alignment exposure adjustment
2445 if (_exp_register
== 1) {
2446 ui::get()->exposure_2();
2447 set_exposure_ratio(m
, scale_clusters
[0], offset
, local_ax_count
, 1);
2454 ui::get()->postmatching();
2455 offset
.use_full_support();
2456 here
.diff(scale_clusters
[0], perturb
, offset
, local_ax_count
, m
);
2458 offset
.use_restricted_support();
2459 ui::get()->set_match(here
.get_error());
2462 * Free the level-of-detail structures
2465 final_clusters(scale_clusters
, scale_factor
, steps
);
2468 * Ensure that the match meets the threshold.
2471 if (threshold_ok(here
.get_error())) {
2473 * Update alignment variables
2476 element
->default_initial_alignment
= offset
;
2477 element
->old_final_alignment
= offset
;
2478 ui::get()->alignment_match_ok();
2479 } else if (local_gs
== 4) {
2482 * Align with outer starting points.
2486 * XXX: This probably isn't exactly the right thing to do,
2487 * since variables like old_initial_value have been overwritten.
2490 diff_stat_t nested_result
= _align(m
, -1, element
);
2492 if (threshold_ok(nested_result
.get_error())) {
2493 return nested_result
;
2494 } else if (nested_result
.get_error() < here
.get_error()) {
2495 here
= nested_result
;
2498 if (is_fail_default
)
2499 offset
= element
->default_initial_alignment
;
2501 ui::get()->set_match(here
.get_error());
2502 ui::get()->alignment_no_match();
2504 } else if (local_gs
== -1) {
2511 if (is_fail_default
)
2512 offset
= element
->default_initial_alignment
;
2514 ui::get()->alignment_no_match();
2518 * Write the tonal registration multiplier as a comment.
2521 pixel trm
= image_rw::exp(m
).get_multiplier();
2522 tsave_trm(tsave
, trm
[0], trm
[1], trm
[2]);
2525 * Save the transformation information
2528 for (offset
.set_current_index(0);
2529 offset
.get_current_index() < _ma_card
;
2530 offset
.push_element()) {
2532 tsave_next(tsave
, offset
, alignment_class
== 2,
2533 offset
.get_current_index() == 0);
2536 offset
.set_current_index(0);
2541 * Update match statistics.
2544 match_sum
+= (1 - here
.get_error()) * 100;
2553 * High-pass filter for frequency weights
2555 static void hipass(int rows
, int cols
, fftw_complex
*inout
) {
2556 for (int i
= 0; i
< rows
* vert_freq_cut
; i
++)
2557 for (int j
= 0; j
< cols
; j
++)
2558 for (int k
= 0; k
< 2; k
++)
2559 inout
[i
* cols
+ j
][k
] = 0;
2560 for (int i
= 0; i
< rows
; i
++)
2561 for (int j
= 0; j
< cols
* horiz_freq_cut
; j
++)
2562 for (int k
= 0; k
< 2; k
++)
2563 inout
[i
* cols
+ j
][k
] = 0;
2564 for (int i
= 0; i
< rows
; i
++)
2565 for (int j
= 0; j
< cols
; j
++)
2566 for (int k
= 0; k
< 2; k
++)
2567 if (i
/ (double) rows
+ j
/ (double) cols
< 2 * avg_freq_cut
)
2568 inout
[i
* cols
+ j
][k
] = 0;
2574 * Reset alignment weights
2576 static void reset_weights() {
2577 if (alignment_weights
!= NULL
)
2578 delete alignment_weights
;
2580 alignment_weights
= NULL
;
2584 * Initialize alignment weights
2586 static void init_weights() {
2587 if (alignment_weights
!= NULL
)
2590 int rows
= reference_image
->height();
2591 int cols
= reference_image
->width();
2592 int colors
= reference_image
->depth();
2594 alignment_weights
= new image_ale_real(rows
, cols
,
2595 colors
, "alignment_weights");
2597 assert (alignment_weights
);
2599 for (int i
= 0; i
< rows
; i
++)
2600 for (int j
= 0; j
< cols
; j
++)
2601 alignment_weights
->set_pixel(i
, j
, pixel(1, 1, 1));
2605 * Update alignment weights with weight map
2607 static void map_update() {
2609 if (weight_map
== NULL
)
2614 point map_offset
= reference_image
->offset() - weight_map
->offset();
2616 int rows
= reference_image
->height();
2617 int cols
= reference_image
->width();
2619 for (int i
= 0; i
< rows
; i
++)
2620 for (int j
= 0; j
< cols
; j
++) {
2621 point map_weight_position
= map_offset
+ point(i
, j
);
2622 if (map_weight_position
[0] >= 0
2623 && map_weight_position
[1] >= 0
2624 && map_weight_position
[0] <= weight_map
->height() - 1
2625 && map_weight_position
[1] <= weight_map
->width() - 1)
2626 alignment_weights
->pix(i
, j
) *= weight_map
->get_bl(map_weight_position
);
2631 * Update alignment weights with algorithmic weights
2633 static void wmx_update() {
2636 static exposure
*exp_def
= new exposure_default();
2637 static exposure
*exp_bool
= new exposure_boolean();
2639 if (wmx_file
== NULL
|| wmx_exec
== NULL
|| wmx_defs
== NULL
)
2642 unsigned int rows
= reference_image
->height();
2643 unsigned int cols
= reference_image
->width();
2645 image_rw::write_image(wmx_file
, reference_image
);
2646 image_rw::write_image(wmx_defs
, reference_defined
, exp_bool
);
2649 int exit_status
= 1;
2651 execlp(wmx_exec
, wmx_exec
, wmx_file
, wmx_defs
, NULL
);
2652 ui::get()->exec_failure(wmx_exec
, wmx_file
, wmx_defs
);
2658 ui::get()->fork_failure("d2::align");
2660 image
*wmx_weights
= image_rw::read_image(wmx_file
, exp_def
);
2662 if (wmx_weights
->height() != rows
|| wmx_weights
->width() != cols
)
2663 ui::get()->error("algorithmic weighting must not change image size");
2665 if (alignment_weights
== NULL
)
2666 alignment_weights
= wmx_weights
;
2668 for (unsigned int i
= 0; i
< rows
; i
++)
2669 for (unsigned int j
= 0; j
< cols
; j
++)
2670 alignment_weights
->pix(i
, j
) *= wmx_weights
->pix(i
, j
);
2675 * Update alignment weights with frequency weights
2677 static void fw_update() {
2679 if (horiz_freq_cut
== 0
2680 && vert_freq_cut
== 0
2681 && avg_freq_cut
== 0)
2685 * Required for correct operation of --fwshow
2688 assert (alignment_weights
== NULL
);
2690 int rows
= reference_image
->height();
2691 int cols
= reference_image
->width();
2692 int colors
= reference_image
->depth();
2694 alignment_weights
= new image_ale_real(rows
, cols
,
2695 colors
, "alignment_weights");
2697 fftw_complex
*inout
= (fftw_complex
*) fftw_malloc(sizeof(fftw_complex
) * rows
* cols
);
2701 fftw_plan pf
= fftw_plan_dft_2d(rows
, cols
,
2703 FFTW_FORWARD
, FFTW_ESTIMATE
);
2705 fftw_plan pb
= fftw_plan_dft_2d(rows
, cols
,
2707 FFTW_BACKWARD
, FFTW_ESTIMATE
);
2709 for (int k
= 0; k
< colors
; k
++) {
2710 for (int i
= 0; i
< rows
* cols
; i
++) {
2711 inout
[i
][0] = reference_image
->get_pixel(i
/ cols
, i
% cols
)[k
];
2716 hipass(rows
, cols
, inout
);
2719 for (int i
= 0; i
< rows
* cols
; i
++) {
2721 alignment_weights
->pix(i
/ cols
, i
% cols
)[k
] = fabs(inout
[i
][0] / (rows
* cols
));
2723 alignment_weights
->pix(i
/ cols
, i
% cols
)[k
] =
2724 sqrt(pow(inout
[i
][0] / (rows
* cols
), 2)
2725 + pow(inout
[i
][1] / (rows
* cols
), 2));
2730 fftw_destroy_plan(pf
);
2731 fftw_destroy_plan(pb
);
2734 if (fw_output
!= NULL
)
2735 image_rw::write_image(fw_output
, alignment_weights
);
2740 * Update alignment to frame N.
2742 static void update_to(int n
) {
2744 assert (n
<= latest
+ 1);
2747 static std::vector
<element_t
> elements
;
2754 * Handle the initial frame
2757 elements
[0].input_frame
= image_rw::open(n
);
2759 const image
*i
= elements
[0].input_frame
;
2761 transformation result
= alignment_class
== 2
2762 ? transformation::gpt_identity(i
, scale_factor
)
2763 : transformation::eu_identity(i
, scale_factor
);
2764 result
= tload_first(tload
, alignment_class
== 2, result
, &is_default
);
2765 tsave_first(tsave
, result
, alignment_class
== 2);
2768 kept_t
= new transformation
[image_rw::count()];
2769 kept_ok
= (int *) malloc(image_rw::count()
2774 if (!kept_t
|| !kept_ok
)
2775 ui::get()->memory_error("alignment");
2785 elements
[0].default_initial_alignment
= result
;
2791 for (int i
= latest
+ 1; i
<= n
; i
++) {
2795 * Handle supplemental frames.
2798 assert (reference
!= NULL
);
2800 ui::get()->set_arender_current();
2801 reference
->sync(i
- 1);
2802 ui::get()->clear_arender_current();
2803 reference_image
= reference
->get_image();
2804 reference_defined
= reference
->get_defined();
2811 assert (reference_image
!= NULL
);
2812 assert (reference_defined
!= NULL
);
2814 elements
[j
].input_frame
= image_rw::open(i
);
2815 elements
[j
].is_primary
= 1;
2817 _align(i
, _gs
, &elements
[j
]);
2822 if (elements
.size() > _ma_card
)
2823 elements
.resize(_ma_card
);
2829 * Set the control point count
2831 static void set_cp_count(unsigned int n
) {
2832 assert (cp_array
== NULL
);
2835 cp_array
= (const point
**) malloc(n
* sizeof(const point
*));
2839 * Set control points.
2841 static void set_cp(unsigned int i
, const point
*p
) {
2848 static void exp_register() {
2853 * Register exposure only based on metadata
2855 static void exp_meta_only() {
2860 * Don't register exposure
2862 static void exp_noregister() {
2867 * Set alignment class to translation only. Only adjust the x and y
2868 * position of images. Do not rotate input images or perform
2869 * projective transformations.
2871 static void class_translation() {
2872 alignment_class
= 0;
2876 * Set alignment class to Euclidean transformations only. Adjust the x
2877 * and y position of images and the orientation of the image about the
2880 static void class_euclidean() {
2881 alignment_class
= 1;
2885 * Set alignment class to perform general projective transformations.
2886 * See the file gpt.h for more information about general projective
2889 static void class_projective() {
2890 alignment_class
= 2;
2894 * Set the default initial alignment to the identity transformation.
2896 static void initial_default_identity() {
2897 default_initial_alignment_type
= 0;
2901 * Set the default initial alignment to the most recently matched
2902 * frame's final transformation.
2904 static void initial_default_follow() {
2905 default_initial_alignment_type
= 1;
2909 * Perturb output coordinates.
2911 static void perturb_output() {
2916 * Perturb source coordinates.
2918 static void perturb_source() {
2923 * Frames under threshold align optimally
2925 static void fail_optimal() {
2926 is_fail_default
= 0;
2930 * Frames under threshold keep their default alignments.
2932 static void fail_default() {
2933 is_fail_default
= 1;
2937 * Align images with an error contribution from each color channel.
2940 channel_alignment_type
= 0;
2944 * Align images with an error contribution only from the green channel.
2945 * Other color channels do not affect alignment.
2947 static void green() {
2948 channel_alignment_type
= 1;
2952 * Align images using a summation of channels. May be useful when
2953 * dealing with images that have high frequency color ripples due to
2957 channel_alignment_type
= 2;
2961 * Error metric exponent
2964 static void set_metric_exponent(float me
) {
2965 metric_exponent
= me
;
2972 static void set_match_threshold(float mt
) {
2973 match_threshold
= mt
;
2977 * Perturbation lower and upper bounds.
2980 static void set_perturb_lower(ale_pos pl
, int plp
) {
2982 perturb_lower_percent
= plp
;
2985 static void set_perturb_upper(ale_pos pu
, int pup
) {
2987 perturb_upper_percent
= pup
;
2991 * Maximum rotational perturbation.
2994 static void set_rot_max(int rm
) {
2997 * Obtain the largest power of two not larger than rm.
3000 rot_max
= pow(2, floor(log(rm
) / log(2)));
3004 * Barrel distortion adjustment multiplier
3007 static void set_bda_mult(ale_pos m
) {
3012 * Barrel distortion maximum rate of change
3015 static void set_bda_rate(ale_pos m
) {
3023 static void set_lod_max(int lm
) {
3028 * Set the scale factor
3030 static void set_scale(ale_pos s
) {
3035 * Set reference rendering to align against
3037 static void set_reference(render
*r
) {
3042 * Set the interpolant
3044 static void set_interpolant(filter::scaled_filter
*f
) {
3049 * Set alignment weights image
3051 static void set_weight_map(const image
*i
) {
3056 * Set frequency cuts
3058 static void set_frequency_cut(double h
, double v
, double a
) {
3065 * Set algorithmic alignment weighting
3067 static void set_wmx(const char *e
, const char *f
, const char *d
) {
3074 * Show frequency weights
3076 static void set_fl_show(const char *filename
) {
3077 fw_output
= filename
;
3081 * Set transformation file loader.
3083 static void set_tload(tload_t
*tl
) {
3088 * Set transformation file saver.
3090 static void set_tsave(tsave_t
*ts
) {
3095 * Get match statistics for frame N.
3097 static int match(int n
) {
3111 * Message that old alignment data should be kept.
3113 static void keep() {
3114 assert (latest
== -1);
3119 * Get alignment for frame N.
3121 static transformation
of(int n
) {
3134 * Set the certainty-weighted flag.
3136 static void certainty_weighted(int flag
) {
3137 certainty_weights
= flag
;
3141 * Set the global search type.
3143 static void gs(const char *type
) {
3144 if (!strcmp(type
, "local")) {
3146 } else if (!strcmp(type
, "inner")) {
3148 } else if (!strcmp(type
, "outer")) {
3150 } else if (!strcmp(type
, "all")) {
3152 } else if (!strcmp(type
, "central")) {
3154 } else if (!strcmp(type
, "defaults")) {
3156 } else if (!strcmp(type
, "points")) {
3160 ui::get()->error("bad global search type");
3165 * Multi-alignment contiguity
3167 static void ma_cont(double value
) {
3172 * Multi-alignment cardinality
3174 static void ma_card(unsigned int value
) {
3175 assert (value
>= 1);
3180 * Set the minimum overlap for global searching
3182 static void gs_mo(ale_pos value
, int _gs_mo_percent
) {
3184 gs_mo_percent
= _gs_mo_percent
;
3188 * Set alignment exclusion regions
3190 static void set_exclusion(exclusion
*_ax_parameters
, int _ax_count
) {
3191 ax_count
= _ax_count
;
3192 ax_parameters
= _ax_parameters
;
3196 * Get match summary statistics.
3198 static ale_accum
match_summary() {
3199 return match_sum
/ match_count
;