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fixed improper generic parameter use in Tree.duplicateAs > Map, necessary
2016-05-28
Stephan Saalfeld
f
ixed im
p
ro
p
e
r
generic parameter use in
T
ree
.
dupli
c
ateAs
.
.
.
commit
|
commitdiff
|
tree
2016-02-06
S
t
ephan Sa
a
lf
e
ld
re
p
lace
d
M
LT2
in elastig montage and alignment
b
y
TPS
commit
|
commitdiff
|
tree
2016-02-06
Stephan
Sa
a
lf
e
ld
ad
d
ed
d
ep
e
nde
n
c
y
to jitk-tps-
1
.
3
.
2 and managed tr
a
k
e
m2_tps
commit
|
commitdiff
|
tree
2016-01-09
Stephan Saalfeld
a
c
tually use multiplehypothe
s
es fl
a
g and
o
t
her fix
e
s
commit
|
commitdiff
|
tree
2016-01-08
Stephan
S
a
alf
e
ld
e
n
a
b
le multipl
e
hypoth
e
ses matching in Trak
E
M2's distorti
o
n
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfe
l
d
enable multiple hypotheses mat
c
h
i
ng
i
n
Alig
n
backwards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfeld
use mip
m
a
p
threads n
u
m
be
r
pr
o
per
t
y for parallel intensity
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalf
e
l
d
render int
e
nsity
c
orrec
t
ed
i
m
ages in a single thre
a
d
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfeld
p
reparing
r
elea
s
e pom-trakem2-2
.
0
.
0, VectorString-2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
St
e
phan Saalfeld
next devel
o
pment cycle
commit
|
commitdiff
|
tree
2015-09-03
S
tephan Saalfeld
po
m
-trake
m
2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalfel
d
adde
d
multi-threading f
o
r
c
oef
f
icients
m
atching
commit
|
commitdiff
|
tree
2015-09-03
Stepha
n
Saalfeld
p
ut mat
c
h in
t
e
n
sit
i
es
c
omma
n
ds into
w
ork
e
rs to block
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
S
tephan
S
aalf
e
ld
Wor
k
ing ver
s
ion without multi-threadi
n
g and
bure
a
ucrats
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfel
d
includ
e
d m
a
tc
h
intens
i
ties plugin,
build with SNAPS
H
OTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Stephan Saa
l
feld
M
e
rge pull request #11 from
hanslovsky/ma
s
ter
commit
|
commitdiff
|
tree
2015-04-07
Steph
a
n Saalfeld
next d
e
velopment cycle
commit
|
commitdiff
|
tree
2015-04-07
Stephan Saa
l
feld
rele
a
se pom-trakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfeld
re-release pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
S
t
e
p
han Saa
l
feld
next develo
p
m
e
nt cycle
commit
|
commitdiff
|
tree
2015-03-24
Steph
a
n
Saalfeld
re-release pom
-
trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
S
teph
a
n Saalfeld
next developmen
t
cycle (problem with Ecl
i
ps
e
Kepler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saal
f
eld
rel
e
ase pom-trake
m
2-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
S
t
e
p
han Saal
f
el
d
n
ext devel
o
pme
n
t cycle
commit
|
commitdiff
|
tree
2015-03-07
Stephan Sa
a
lfeld
releas
e
commit
|
commitdiff
|
tree
2015-02-14
St
e
phan Saalf
e
ld
next devel
o
pment cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan
S
a
alfeld
release
commit
|
commitdiff
|
tree
2015-02-14
St
e
pha
n
Saal
f
eld
release
commit
|
commitdiff
|
tree
2015-01-14
Stepha
n
Saalfel
d
added g
e
tters for mls2 p, q, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfel
d
Added
E
r
i
c
T
r
autman's
check
f
or number of threa
d
s to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stepha
n
S
a
a
lfe
l
d
Fixed Value2N
o
is
e
Filter m
a
x export
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
a
a
lf
e
ld
bu
m
p to next deve
l
opment cycle
commit
|
commitdiff
|
tree
2014-12-19
S
t
e
p
h
a
n Saalfeld
Merge remote-trac
k
i
ng br
a
n
c
h 'ori
g
in'
commit
|
commitdiff
|
tree
2014-12-19
Step
h
an Saalf
e
ld
reproducible
b
uild pom-t
r
akem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stepha
n
S
a
alfeld
sep
a
rated Coord
i
nateTrans
f
orm
p
arts of
lens
c
orrectio
n
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Saalfel
d
added multi
p
le level downsampli
n
g
f
or
C
olorP
r
ocess
o
r
commit
|
commitdiff
|
tree
2014-12-17
Stephan S
a
al
f
eld
bump
to next develo
p
ment cycle
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
second try to make re
p
roducibl
e
build pom
-
trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an Saalfeld
Merge
b
ran
c
h
'
intensity-
t
ransform
'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
bump to next develo
p
me
n
t cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan S
a
alfe
l
d
rep
r
oducible
b
uild
pom-t
r
ak
e
m2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Sa
a
lfeld
Merge remote-track
i
ng br
a
nch 'origi
n
/master'
commit
|
commitdiff
|
tree
2014-12-12
Step
h
a
n
Saalf
e
ld
bump to new de
v
elo
p
ment cycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
repro
d
u
c
ible
b
uil
d
p
om-trakem2
-
1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
Merg
e
branch 'master' of github
.
c
o
m:trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
ad
d
ed
ValueToN
o
i
se filter which fills a given inte
n
sity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
S
t
e
phan S
a
alfel
d
Update README
commit
|
commitdiff
|
tree
2014-11-12
Stephan
S
aalfeld
Updat
e
README
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
han Saalfeld
Merge branch
'master
'
i
n
to co
o
rdX
f
mFix
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
h
a
n
Saal
f
eld
M
e
rge remo
t
e-tracking b
r
anch 'ori
g
in/
i
nte
n
sity-
t
ransform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
add
e
d
R
obustN
o
rmalize
d
Lo
c
alContra
s
tFilt
e
r
,
fast an
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
S
t
ephan Saal
f
eld
Changed default block r
a
dius in NormalizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfel
d
auto-removed some
training whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an S
a
alfel
d
added
run method th
a
t does not need
a w
o
rker for ea
s
ie
r
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfeld
aut
o
-removed some trailing wh
i
tespac
e
s
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saalfeld
par
a
l
l
elized inter
s
ect
i
on tests for pairOverlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfeld
auto-finalize c
o
nsta
n
t prop
e
rties and
p
arameter
s
i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
thread
s
afe Utils
.
ens
u
r
e(File)
commit
|
commitdiff
|
tree
2014-06-06
S
t
ephan
S
a
alfeld
fixed bug in g
e
n
eration of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalf
e
l
d
externalized Dist
o
rtionCorrection
.
run to
e
nable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclipse autu-cosmetics in D
i
stortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stepha
n
Saalfeld
Merge branch '
m
aster' i
n
t
o
intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan
Saalfeld
use stand
a
rd wr
i
ter
f
o
r coordinatetrans
f
orms
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalf
e
ld
d
e
p
end on java
x
.
m
e
d
i
a for jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
added me
t
h
o
d
s for
downs
a
mp
l
ing
m
o
r
e
t
h
an
one level
commit
|
commitdiff
|
tree
2013-10-10
S
t
ep
h
an Saalfeld
replaced plugins
.
config with the
F
iji version
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saa
l
f
e
ld
Mer
g
e branch 'master
'
of ssh://repo
.
or
.
c
z
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
M
erge branc
h
'maste
r
' o
f
ssh://repo
.
or
.
cz/srv/
g
it/trakem
2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
P
arallel pairOv
e
rlap
p
ingTiles did not work an
d
rep
o
rted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saal
f
eld
Merge branch 'master' of ssh://repo
.
or
.
c
z
/srv/git/
t
rak
e
m2
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan
S
a
alfeld
re-added leg
a
cy
o
p
timize
r
for spring meshes, th
i
s would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T
2
-
N
IT/pom
.
xml can in
h
erit v
e
rs
i
on
num
b
e
r
from par
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Stephan S
a
alfeld
added missi
n
g d
e
p
e
ndencies to
java3d core-utils a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Ste
p
han Saalfeld
set p
a
ren
t
pom of pom-trakem
2
to
pom-f
i
ji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
Merge
b
ranch 'spring-mes
h
2
' of ssh:
/
/
repo
.
or
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saalfel
d
M
erge branch 'master' in
t
o
s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
r
aise
d
m
p
icbg depende
n
cy version t
o
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfel
d
rais
e
d de
p
endency
t
o
S
imple_Neur
i
te_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
ph
a
n Saalfel
d
Merge branch 'master' into sp
r
ing-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
add
e
d commen
t
s and auto
-
finalize
i
n Distortion
C
orrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Sa
a
lfeld
a
d
ded mpicb
g
.
ver
s
io
n
as mav
e
n propert
y
,
commit
|
commitdiff
|
tree
2013-05-06
Stephan S
a
a
lfeld
track mo
v
e of the i
m
g
l
ib1 depe
n
d
e
nc
y
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saa
l
feld
Merge bran
c
h 'master'
i
nto s
p
rin
g
-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfe
l
d
Merge bra
n
ch 'master'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
S
t
ep
h
an Saalfeld
u
se
a
rraylist where arraylists
are returned
commit
|
commitdiff
|
tree
2013-01-16
Step
h
an Saalfeld
adjust m
p
i
cbg spr
i
ng-me
s
h2 whic
h
ne
e
ds less d
a
mping
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saalfeld
F
ixed bug in Patch
.
getFullCoo
r
dina
t
e
T
ransform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saal
f
eld
Changed fixedPatches/Tile
s
inp
u
t
collection to Se
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Saa
l
fel
d
P
a
ir co
n
structor
h
as to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saal
f
eld
for
g
ot to set isAl
i
gned flag
i
n elastic la
y
e
r
alignm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfe
l
d
elastic montage
p
ar
a
m must be public
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saalfeld
added Patch
.
getFullCordinateT
r
ansform() whic
h
ge
n
er
a
tes
a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
*
removed
isAligned from A
b
stract P
a
ram class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saa
l
feld
877: it is legal for layerThing to b
e
null
commit
|
commitdiff
|
tree
2012-12-21
Steph
a
n
S
aalfeld
Corre
c
ted several
long-standing i
s
s
u
es with SIFT
-
li
n
ear and
commit
|
commitdiff
|
tree
2012-12-19
S
t
eph
a
n Saa
l
f
e
ld
Regul
a
riz
e
dLay
e
rAli
g
nment go
t
more
flexib
l
e AP
I
method
s
a
nd
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Saalf
e
l
d
clea
r
i
ng cache
in layer al
i
gnment mu
s
t be
defaul
t
true
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an Saalf
e
ld
print o
p
timizer results
a
nd do
n
ot print "m
a
tchin
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do not remove empty layers
i
n l
a
yer alignment
commit
|
commitdiff
|
tree
2012-11-07
S
tephan Saalfeld
fi
x
ed version number of mpicbg
depend
e
ncy
commit
|
commitdiff
|
tree
next