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added dependency to jitk-tps-1.3.2 and managed trakem2_tps
2016-02-06
Stephan S
a
alf
e
l
d
added de
p
endency to jit
k
-tp
s
-1
.
3
.
2 and m
a
naged trak
e
m2_
t
ps
commit
|
commitdiff
|
tree
2016-01-09
Step
h
an Saalfeld
a
c
tually
use multiplehypothe
s
e
s
flag and
oth
e
r fixe
s
commit
|
commitdiff
|
tree
2016-01-08
S
t
ephan
S
aalfeld
ena
b
le m
u
l
t
iple hypot
h
eses matching in TrakE
M
2's
d
i
st
o
r
tion
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Sa
a
l
feld
enable
multiple hypo
t
h
eses matching
in Align b
a
ckwards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
tephan Saa
l
f
eld
use
mipmap thread
s
numb
e
r pr
o
p
er
t
y for paral
l
el inte
n
s
i
t
y
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
t
epha
n
Saalfeld
render inten
s
i
t
y c
o
rrected images
i
n a single th
r
ead
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stepha
n
Saalfeld
pr
e
paring rele
a
s
e pom-trakem2
-
2
.
0
.
0
,
Ve
c
to
r
S
t
ring
-
2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
Steph
a
n Saalf
e
ld
next developm
e
nt cycle
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalfeld
pom-
t
rake
m
2-
1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Steph
a
n
Saa
l
fel
d
add
e
d m
u
lt
i
-threading f
o
r
coefficie
n
ts match
i
ng
commit
|
commitdiff
|
tree
2015-09-03
St
e
phan Saalfeld
put match
intensities commands into workers t
o
block
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
Workin
g
v
ersion without mu
l
ti-t
h
re
a
din
g
and bureaucrats
commit
|
commitdiff
|
tree
2015-09-02
S
t
epha
n
Saal
f
eld
i
n
cluded
m
a
t
ch i
n
tensi
t
ies plugin, build w
i
t
h
SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Stephan Saalf
e
l
d
Merge pull request #11 fr
o
m hanslov
s
k
y
/
ma
s
t
e
r
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
han Saalfeld
next
d
evelopment cy
c
le
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
han Saalfeld
r
e
le
a
se pom-trakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan S
a
alfeld
re-release
pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
S
tephan Saalfeld
next development cycle
commit
|
commitdiff
|
tree
2015-03-24
Stephan
Saalfeld
re-rel
e
ase pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Stepha
n
Saalfeld
next developm
e
nt
c
ycle (prob
l
em with Ec
l
ipse
K
epler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfeld
r
e
l
ea
s
e pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
S
tephan Saalf
e
ld
next developmen
t
c
ycle
commit
|
commitdiff
|
tree
2015-03-07
Ste
p
han Sa
a
lfeld
r
elease
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfeld
n
ext
d
evelopm
e
nt cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfeld
relea
s
e
commit
|
commitdiff
|
tree
2015-01-14
S
t
ephan Saalf
e
ld
added getters for mls2 p,
q,
an
d
w
commit
|
commitdiff
|
tree
2015-01-12
S
t
ephan Sa
a
lf
e
l
d
Added E
r
ic Traut
m
an's check
fo
r
number of t
h
reads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
S
tephan Saal
f
eld
F
i
x
ed
V
alue2NoiseFilter ma
x
ex
p
ort
commit
|
commitdiff
|
tree
2014-12-19
S
tephan Saal
f
eld
bum
p
to
ne
x
t
de
v
elopment
c
ycle
commit
|
commitdiff
|
tree
2014-12-19
Step
h
an Saa
l
feld
Mer
g
e re
m
ote-
t
racking branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Steph
a
n Saalfe
l
d
reproducible build pom-trakem2
-
1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfel
d
separated Co
o
rdinateTransform pa
r
ts
of lensco
r
rection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan
S
aalfeld
added
m
ul
t
iple l
e
ve
l
downsampling
f
or ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Sa
a
lfe
l
d
bump to next development cycle
commit
|
commitdiff
|
tree
2014-12-17
Stephan
Saalfe
l
d
second
try to
mak
e
repr
o
d
u
cible build
p
o
m-trak
e
m2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
tep
h
an Saalfeld
M
e
r
ge branch 'in
t
ensit
y
-transform'
commit
|
commitdiff
|
tree
2014-12-13
St
e
phan Saalfeld
bump to next
development
cycle
commit
|
commitdiff
|
tree
2014-12-13
S
teph
a
n Saalfeld
r
e
producible
buil
d
pom-t
r
ake
m
2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan Saalf
e
ld
Merge rem
o
te-tracking
branc
h
'origi
n
/mas
t
er
'
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
h
a
n
Saalf
e
ld
bump to new development cycle
commit
|
commitdiff
|
tree
2014-12-12
S
tephan Saalf
e
ld
reprodu
c
ible b
u
i
l
d pom-trak
e
m2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge
branch 'm
a
ster' of github
.
com:
t
r
ake
m
2/TrakE
M
2
commit
|
commitdiff
|
tree
2014-12-12
S
t
eph
a
n
S
aalfeld
added ValueToNoise filter which fil
l
s
a given in
t
e
n
sity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Stephan
Saa
l
fe
l
d
U
p
date README
commit
|
commitdiff
|
tree
2014-11-12
S
t
ephan Saa
l
fel
d
Update README
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
han Saalfeld
Merge branch '
m
as
t
er
'
i
n
to
c
oor
d
Xfm
F
ix
commit
|
commitdiff
|
tree
2014-11-07
S
t
ephan S
a
alfeld
Merge
re
m
ote-t
r
acking bran
c
h 'origin/intensit
y
-trans
f
orm
'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
added Rob
u
stNormali
z
e
dLocalContrastFi
l
t
e
r, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Steph
a
n
S
aalfeld
Cha
n
ged de
f
ault bl
o
c
k radius in
N
ormalize
L
o
c
alContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
au
t
o-
r
emoved some
t
ra
i
ning white
s
paces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
added run method that does not need a worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aalfeld
au
t
o-removed some trailing whitesp
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
a
a
lfe
l
d
parallelized inters
e
ction
tests
f
or pairOverlappingT
i
les
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
auto
-
fin
a
li
z
e co
n
stant propertie
s
and parameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
threadsafe Util
s
.
ensure(
F
ile)
commit
|
commitdiff
|
tree
2014-06-06
S
t
e
phan
S
aalfeld
fi
x
ed bu
g
in generation of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Steph
a
n Saalfeld
externalized Dis
t
or
t
i
o
nCo
r
r
e
ction
.
run
to ena
b
le cal
l
ing
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclipse autu-cosmetics in DistortionCo
r
rectio
n
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saa
l
f
eld
Merge branch 'master' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
h
an Saalfeld
use
standard
w
riter f
o
r coordinatetr
a
nsforms
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalf
e
ld
depend on javax
.
m
e
d
i
a for jai
commit
|
commitdiff
|
tree
2014-05-19
Stepha
n
S
aalfeld
added me
t
hods for downsamp
l
ing more than one level
commit
|
commitdiff
|
tree
2013-10-10
Step
h
a
n
S
a
alfeld
replaced
p
lugins
.
confi
g
with the Fiji ve
r
s
i
o
n
commit
|
commitdiff
|
tree
2013-09-20
St
e
phan Saalfeld
M
e
r
g
e branch 'master' of ssh:
/
/
r
epo
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch
'
master' of
s
sh://repo
.
o
r
.
c
z/srv/git
/
t
r
akem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan S
a
alfe
l
d
Parallel pairOverlappin
g
Tiles did n
o
t work and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan
S
aalfeld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan S
a
alfe
l
d
re-added
l
egac
y
optim
i
zer
for spring
mes
h
e
s
, this
w
ould
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan
Saa
l
feld
T2-NIT
/
pom
.
xml
c
an
i
nherit version
n
u
mbe
r
from parent
commit
|
commitdiff
|
tree
2013-08-14
Ste
p
h
an Saalfeld
a
d
d
e
d
mis
s
in
g
d
e
pe
n
dencies
to java
3
d c
o
re-uti
l
s
and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saalfe
l
d
set
p
a
rent po
m
of po
m
-trak
e
m2 to pom-fiji
.
2
.
0
.
0-SNAPS
H
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
eld
M
e
r
g
e br
a
nch 'spring-
m
e
s
h2'
o
f s
s
h://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
ld
Me
r
ge branc
h
'master'
i
nto spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
phan
S
a
a
lfel
d
raised mpicbg
d
e
pendency version
t
o 0
.
6
.
1
-S
N
APSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saalfe
l
d
r
a
ised
d
e
penden
c
y to Simple_Neurite_T
r
acer
t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan
S
aalfeld
Merge
b
ranc
h
'ma
s
ter'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added comment
s
and au
t
o-fi
n
alize in Disto
r
tionCorre
c
tion/
N
LT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
a
lfeld
ad
d
ed mpicbg
.
version
a
s
ma
v
e
n
p
r
oper
t
y,
commit
|
commitdiff
|
tree
2013-05-06
Steph
a
n Sa
a
lfeld
t
r
ack move of the img
l
ib
1
depende
n
cy
commit
|
commitdiff
|
tree
2013-04-22
Stepha
n
Saalfeld
Me
r
ge
bran
c
h 'ma
s
ter'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
S
t
e
p
han Saal
f
eld
Merge br
a
n
ch 'mas
t
er
'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saa
l
feld
use
arraylist wh
e
re arraylists
a
re retu
r
ned
commit
|
commitdiff
|
tree
2013-01-16
S
t
ephan Saalfeld
adjust mpicbg spring-me
s
h2 whi
c
h
needs less d
a
mp
i
n
g
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalfel
d
Fixed bug in
Patch
.
getFullCoordinateT
r
ansfo
r
m tha
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
teph
a
n
Saalfeld
Changed fixedPatches/Tiles input co
l
lection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Saa
l
fe
l
d
Pair constructor
has to be
public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfeld
f
o
rgot to
s
e
t
isAlign
e
d flag in
elastic layer alignmen
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Step
h
a
n
Saalfeld
elastic monta
g
e param
must b
e
public
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
added Patch
.
g
e
tFullCordinateTransfo
r
m() which
g
enerates a
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saalfeld
* removed is
A
ligned f
r
om Abs
t
ra
c
t P
a
ram class
commit
|
commitdiff
|
tree
2013-01-05
S
t
ephan
Saalfeld
877: i
t
i
s
legal fo
r
layerThing to be null
commit
|
commitdiff
|
tree
2012-12-21
Ste
p
han
S
aalfe
l
d
Corrected several long-stan
d
ing iss
u
es with SIFT-
l
inear and
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan Saal
f
eld
RegularizedLayerAlignment got mor
e
flexi
b
le AP
I
methods and
commit
|
commitdiff
|
tree
2012-12-19
Step
h
a
n Saalfeld
c
l
earing cache
i
n layer alig
n
ment
must be de
f
a
u
lt tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saa
l
feld
pri
n
t opt
i
mizer
results and do no
t
print
"matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
t
eph
a
n
S
a
a
lfeld
do not remove
e
m
p
ty layers in layer al
i
gnm
e
n
t
commit
|
commitdiff
|
tree
2012-11-07
S
tephan S
a
alfeld
fi
x
ed v
e
r
s
ion nu
m
ber
o
f
mpicbg de
p
endency
commit
|
commitdiff
|
tree
2012-11-07
S
t
epha
n
Saalfeld
fixed
m
erge error: moved
Ro
b
u
s
t
N
ormal
i
zeLocal
C
on
t
rast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
ep
h
an Saalfeld
multi-threade
d
RobustNormalize
L
ocalContrast mai
n
b
o
dy
commit
|
commitdiff
|
tree
next