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added dependency to jitk-tps-1.3.2 and managed trakem2_tps
2012-09-01
Stephan Saalfeld
R
e
mov
e
d Display
C
a
n
v
as
.
setDrawi
n
gColor(int,int,boo
l
ea
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
a
l
feld
Merge bra
n
ch 'mas
t
er
'
of ssh://
r
epo
.
o
r
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-08-31
Ste
p
han Saalfeld
add
e
d ex
p
erimental local co
n
trast enhancer RobustN
o
rmalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan
S
aalfeld
remov
e
d
o
b
so
l
ete
choic
e
from alig
n
layer
s
d
i
alo
g
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split
elast
i
c montage dialog for block
matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
S
a
alfeld
Merge branch 'master' of ssh://
r
epo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-06-26
S
te
p
han
Saalfeld
use and do not ignore alpha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfe
l
d
u
s
e the
new sequential dialogs in "
m
ontage"
f
o
r a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
tephan
Sa
a
lfeld
Merge branch
'm
a
ster'
o
f ssh:/
/
r
epo
.
or
.
cz/srv/git/t
r
ak
e
m2
commit
|
commitdiff
|
tree
2012-06-20
Ste
p
h
a
n
S
aalfeld
fi
x
ed range check i
n
layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan S
a
alfeld
fixe
d
condition check
in Align Layers for
r
e
g
ularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
S
teph
a
n Saalfeld
Mer
g
e
b
ranch 'master' i
n
to re
g
ularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not c
o
nsider
d
isconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
M
e
rge branch 'reg
u
larized-affi
n
e'
o
f
ss
h
://repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
pre-align graphs and match
o
n
l
y ove
r
la
p
p
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
pre-align graphs
an
d
match only
o
v
erlapping
t
iles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n
Saalfe
l
d
initiali
z
e
Tile models and
n
ot on
l
y patche
s
in alignG
r
aphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
changed a
l
ignGraph
s
input co
l
l
ectio
n
s from Set t
o
Iterabl
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
make
s
ure
that sta
t
i
c paramete
r
s do not overr
i
de e
a
ch
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
eld
remove spurious import
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saalfeld
workaround Oracle javac
g
en
e
rics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
multi-layer-m
o
saic us
e
s Param/ParamOptimize
.
s
e
tup(St
r
ing
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an
Saalfeld
montage layers u
s
es Param
O
ptimize
.
setup
i
n
stead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Saa
l
fe
l
d
do not fix a rand
o
m
t
ile if
n
one is f
i
xed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
lfeld
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Added
.
mailm
a
p
commit
|
commitdiff
|
tree
2012-05-21
St
e
p
h
an Saalfeld
Merge branch 'master' into regu
l
arized-affin
e
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saa
l
fe
l
d
added *None* field to layer range refer
e
nce selec
t
ion
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfeld
spl
i
t Al
i
gn
.
ParamOptimi
z
e
d
ialogs in pieces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalf
e
ld
added Generic
A
ffineTile
2
D
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
generalized Abstrac
t
Affine
T
il
e
2D
g
eneri
c
paramete
r
commit
|
commitdiff
|
tree
2012-05-15
Step
h
an Saalfeld
track refac
t
oring in mpicb
g
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
added
r
egulariz
e
d af
f
i
ne
l
a
yer alignment
,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfeld
fixe
d
c
re
a
t
e
Im
a
g
e(): u
s
e
premultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saalfeld
d
o n
o
t pri
n
t the mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
for now, do not use pr
e
-mul
t
iplied a
l
pha
s
ince
i
t
does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
teph
a
n Saa
l
feld
Fix
e
d wrong painting of Patches
when us
i
ng a
d
o
wnsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
ha
n
Saalfe
l
d
Do
w
n
s
am
p
l
e
r
MipMaps now
c
o
n
s
i
stently use
s
combined do
w
n
sampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
h
an
Saalfeld
fixed Do
w
n
s
amplerMipMaps blen
d
ing merged
alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
a
a
lfeld
Downsamp
l
er test s
t
ill shows
i
t being signif
i
cantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fix
e
d
D
ownsamp
l
er: range c
h
e
ck in by
t
e conver
s
ion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saa
l
feld
Merge
b
ra
n
ch 'int
e
g
r
al' of ssh://repo
.
or
.
cz/s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
added m
i
ssi
n
g
package to Fakef
i
le
commit
|
commitdiff
|
tree
2012-03-08
S
tephan Saal
f
eld
Mer
g
e
bra
n
ch 'mast
e
r' of
s
sh://
r
epo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n Saalfeld
fix local sca
l
e estimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added getLocalScale(x,y) method to Patch
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Sa
a
l
feld
patch does
not
p
ropaga
t
e NonInvert
i
b
l
eModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
Me
r
ge branch 'master' of s
s
h
:
//repo
.
o
r
.
c
z
/s
r
v/git/trakem
2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
a
dded methods
t
o f
e
tch t
h
e cl
o
sest tr
i
an
g
l
e of a trans
f
orm
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saal
f
eld
in the middle of
.
.
.
a
mend with final c
o
m
m
i
t
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
han
Saalfeld
demons
t
rate byte conversion
i
n a
n
extra
loop to
be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan
S
aalfeld
Merge branch 'integral' o
f
ssh://repo
.
or
.
cz/srv/g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Steph
a
n Saalfeld
Downsampler finished
.
I have tes
t
ed several var
i
ants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Sa
a
l
feld
experimant
a
l commit:
commit
|
commitdiff
|
tree
2012-02-23
Step
h
an Saal
f
eld
M
erge branch
'
int
e
gral
'
of ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfel
d
Downsampler with alpha-channels re
n
deri
n
g i
n
to byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
S
t
e
p
han Saalfeld
M
erge branch 'master'
o
f ssh://repo
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an Saal
f
eld
set interpola
t
i
on mode
to actually int
e
rpolate masks
commit
|
commitdiff
|
tree
2012-01-06
Stephan Saalf
e
ld
Fixed b
u
g 392,
t
he
p
roperty
n
_mipmaps_threads
must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
S
tephan Saalfel
d
E
last
i
cMont
a
ge: do not visuali
z
e
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han Saalfeld
M
e
rge branch 'master
'
of ssh://repo
.
or
.
c
z/s
r
v/g
i
t
/
trake
m
2
commit
|
commitdiff
|
tree
2011-11-07
St
e
phan Saa
l
fe
l
d
Align
T
a
sk: really skip layers annot
a
t
i
on-with l
i
nked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Step
h
an Saalfeld
ElasticMontage: respec
t
fixed Patches (f
r
om s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
S
t
ephan
S
aa
l
feld
renamed shading loca
l
pa
r
ameter
commit
|
commitdiff
|
tree
2011-11-07
S
t
ephan Saalfeld
Attem
p
t to fix bug
3
80
.
Please check if
the
behavi
o
r
commit
|
commitdiff
|
tree
2011-11-07
St
e
phan Saalfeld
adde
d
comment
s
an
d
fix
e
d
typo
commit
|
commitdiff
|
tree
2011-10-22
St
e
phan Saalfeld
Elasti
c
Align
m
en
t
/Montage:
commit
|
commitdiff
|
tree
2011-10-19
Stephan Saalfeld
Merge
b
ranc
h
'm
a
s
t
er' of ssh://re
p
o
.
or
.
c
z/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2011-10-12
St
e
phan Sa
a
lfeld
Merge
b
r
a
nch 'm
a
ster' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2011-10-10
Stephan
S
aa
l
feld
Merge branch
'
ma
s
ter' of ssh:
/
/repo
.
or
.
c
z/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2011-10-10
Stepha
n
Saalfeld
Align uses Uti
l
s
.
log instead of I
J
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Distortion
correction uses Utils
.
log inste
a
d
of IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfel
d
log time and da
t
e
p
ear each lo
g
print
commit
|
commitdiff
|
tree
2011-10-10
Steph
a
n Saalf
e
ld
a
d
ded experiment
a
l 16b
i
t unsigned ti
l
es exporter
commit
|
commitdiff
|
tree
2011-10-10
S
tephan Saa
l
feld
Transfor
m
MeshMappingWith
M
ask
s
got met
h
ods a
n
d
rendering
commit
|
commitdiff
|
tree
2011-10-01
St
e
phan Saalfeld
ma
k
e I
J
.
log to U
t
il
s
.
l
og i
n
El
a
sticLayerAlignment
commit
|
commitdiff
|
tree
2011-09-29
Ste
p
h
a
n Saalfeld
added block radius a
s
param
e
t
er to
commit
|
commitdiff
|
tree
2011-09-28
Stephan Saalfeld
ElasticLayerAlignm
e
nt visualization back
t
o false
commit
|
commitdiff
|
tree
2011-09-27
Stephan Sa
a
lfeld
springmesh d
a
mp
b
ack to normal, n
o
t much
commit
|
commitdiff
|
tree
2011-09-27
S
tephan Sa
a
lf
e
ld
M
e
rge b
r
anch 'master' o
f
ssh:/
/
repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2011-09-27
Step
h
an
S
aalf
e
ld
adde
d
local
smoot
h
ness filter to elastic layer
commit
|
commitdiff
|
tree
2011-09-27
St
e
phan Sa
a
lfeld
adde
d
a
me
t
hod to cre
a
te an AbstractModel using
a
n
commit
|
commitdiff
|
tree
2011-09-25
Step
h
an
S
a
alfeld
fixed wrong namings
fro
m
l
a
s
t comm
i
t
commit
|
commitdiff
|
tree
2011-09-24
Stephan S
a
al
f
eld
added transfer modes
f
or
Coordin
a
t
e
Transfo
r
m
s
,
commit
|
commitdiff
|
tree
2011-09-24
Stepha
n
Sa
a
lfeld
added a me
t
hod t
o
p
re-append a
Coordina
t
eTransfo
r
m
commit
|
commitdiff
|
tree
2011-09-15
Stephan
Saalfel
d
remove clutter
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfel
d
Merge
branch 'ma
s
ter' into elas
t
i
c
-align
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfeld
small declutt
e
r NonLinearTran
s
f
ormMode
commit
|
commitdiff
|
tree
2011-09-14
Stephan Saalfeld
Merge bran
c
h 'elastic
-
ali
g
n' of ssh
:
//repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Stephan
S
aalfel
d
Tra
n
sfo
r
mMe
s
hMapp
i
ngWithMasks multi-threaded
commit
|
commitdiff
|
tree
2011-09-14
S
t
ephan Saalfeld
make mesh res
o
luti
o
n a Patch pa
r
a
m
e
t
er instead of 32
commit
|
commitdiff
|
tree
2011-09-12
Stephan Saalfeld
Merge
b
r
a
n
c
h
'master'
i
nto elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-09-12
Stepha
n
Saalfeld
Mer
g
e
branch 'elastic-a
l
ign' of ss
h
://repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
Stephan
S
a
a
lfeld
separate SIF
T
parameter dialog
commit
|
commitdiff
|
tree
2011-09-06
Stephan
S
aa
l
feld
fi
x
e
d
E
lastic M
o
ntage using the
w
rong linear mo
d
el
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
S
tepha
n
Saalf
e
l
d
f
ixed Down
s
ampler doing one pixel less than it shou
l
d
commit
|
commitdiff
|
tree
2011-08-30
Steph
a
n Saalfeld
E
lasticMonta
g
e
:
sw
i
tch off visual
i
z
ati
o
n again
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalfeld
fix Gaussia
n
m
i
pmap gene
r
ation in F
S
Loader:
commit
|
commitdiff
|
tree
2011-08-30
Stephan S
a
a
lfeld
Flo
a
tProcesssorT2 got a
m
ethod f
o
r d
o
w
nsampling by
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan
Saalfeld
updated serial uid
commit
|
commitdiff
|
tree
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