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added dependency to jitk-tps-1.3.2 and managed trakem2_tps
2016-02-06
Stephan Saalfeld
added
d
ependency to ji
t
k-
t
p
s
-
1
.
3
.
2 and manag
e
d trakem2_tp
s
commit
|
commitdiff
|
tree
2016-01-09
Stephan S
a
alfe
l
d
a
ctually
u
se multiplehypotheses flag and other
f
i
x
e
s
commit
|
commitdiff
|
tree
2016-01-08
Ste
p
han Sa
a
lfeld
e
n
a
ble multiple
h
ypothese
s
matching
i
n T
r
ak
E
M2'
s
d
istortion
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
teph
a
n Sa
a
lfeld
e
nable
m
ultiple hypoth
e
ses matching in Ali
g
n b
a
ckwards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan
Saalfeld
us
e
mipm
a
p th
r
eads number proper
t
y
for parallel
intens
i
ty
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Steph
a
n S
a
a
lfeld
render intensity c
o
r
rected images i
n
a
s
ingle thread
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Step
h
a
n S
a
alfeld
preparing release pom-trak
e
m2-2
.
0
.
0, VectorStrin
g
-
2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
Ste
p
han Saalfeld
next develo
p
ment
cycle
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalfeld
p
om-trakem
2
-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Steph
a
n Saalfeld
ad
d
ed multi-threading
for coefficients matching
commit
|
commitdiff
|
tree
2015-09-03
S
t
ep
h
an Saalfeld
p
u
t match
i
ntensities co
m
m
a
n
d
s
into workers to block
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
Working version
w
it
h
o
u
t multi-threading and bureauc
r
a
ts
commit
|
commitdiff
|
tree
2015-09-02
Ste
p
han Saalf
e
ld
incl
u
de
d
ma
t
ch intensities plugin, bui
l
d
w
ith SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Stephan
S
aalfe
l
d
Mer
g
e pull request #11 from hanslovsky/master
commit
|
commitdiff
|
tree
2015-04-07
S
t
e
pha
n
S
a
alfe
l
d
ne
x
t
d
evelopment cycle
commit
|
commitdiff
|
tree
2015-04-07
Stephan Saalfeld
release pom-trakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfeld
re-release pom-trakem2
-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Step
h
an Saalfeld
next dev
e
lop
m
ent
c
y
cle
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalfeld
re-release
p
om-
t
rakem2
-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saa
l
feld
next d
e
vel
o
pmen
t
cycle
(problem with
Ecli
p
se Kepler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Steph
a
n
S
aalf
e
ld
releas
e
pom
-
tra
k
em
2
-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
S
tep
h
an S
a
alfeld
next develo
p
ment cycle
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Stephan S
a
alfeld
next development
cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfeld
r
e
lease
commit
|
commitdiff
|
tree
2015-02-14
Stephan
S
aalfe
l
d
releas
e
commit
|
commitdiff
|
tree
2015-01-14
S
t
eph
a
n Saalfeld
added getters for m
l
s2 p, q, a
n
d w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
Adde
d
Eric Trau
t
man's check for
n
umber of threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stepha
n
Saalfeld
Fixed Value2
N
oiseFilter
m
a
x export
commit
|
commitdiff
|
tree
2014-12-19
Stepha
n
Saalfeld
b
u
m
p
to next dev
e
lopment cycle
commit
|
commitdiff
|
tree
2014-12-19
S
te
p
han S
a
alfeld
M
erge
remote-tr
a
cking branch 'ori
g
in'
commit
|
commitdiff
|
tree
2014-12-19
Stepha
n
Saa
l
feld
repro
d
uc
i
bl
e
build pom-trakem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saal
f
eld
separated Coord
i
n
a
teTrans
f
orm par
t
s of
lenscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stepha
n
Saalfeld
add
e
d multip
l
e level d
o
w
nsampl
i
ng for ColorProces
s
or
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saal
f
eld
b
ump to
n
e
xt d
e
v
elopment cycle
commit
|
commitdiff
|
tree
2014-12-17
Stephan
S
a
a
lfeld
second t
r
y to make repr
o
ducible buil
d
pom
-
trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Steph
a
n Saal
f
e
l
d
M
e
rge bran
c
h 'in
t
ensity-
t
ransform'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfe
l
d
b
ump to next develo
p
m
ent
cy
c
le
commit
|
commitdiff
|
tree
2014-12-13
Stepha
n
Saal
f
eld
r
eprodu
c
ible build
p
o
m-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
S
t
e
p
h
an Saalfeld
Merg
e
remote-tr
a
cki
n
g branch 'origin/master'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfel
d
bump to
n
e
w development
c
ycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saa
l
feld
reproduci
b
le
b
uild po
m
-trake
m
2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan S
a
alfeld
Merge b
r
anch
'master' of
g
ithub
.
com
:
trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalf
e
ld
added
ValueToNoise
f
i
l
t
er which fill
s
a
g
iv
e
n inte
n
sity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Step
h
an
Saalfeld
Update RE
A
DME
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saalf
e
ld
U
p
d
ate README
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalf
e
ld
Merge branch
'
m
aster
'
into coordX
f
mFix
commit
|
commitdiff
|
tree
2014-11-07
S
t
ephan Saal
f
eld
Merge remote-tracking branc
h
'origin/i
n
tensity-t
r
ans
f
orm'
commit
|
commitdiff
|
tree
2014-10-04
Step
h
an Saalfeld
a
dded RobustNormalize
d
LocalCont
r
a
s
tFi
l
ter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saa
l
feld
Changed default
block radius in Nor
m
alize
L
ocalCo
n
trast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saal
f
eld
auto-remov
e
d so
m
e t
r
aining
whit
e
spaces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan
Saal
f
el
d
added run method that
d
o
e
s not need
a
worker
for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan S
a
alfeld
auto-removed s
o
me tra
i
l
ing
whi
t
espaces
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saa
l
feld
pa
r
allelized inter
s
e
ction tes
t
s for pairOverlappin
g
Tiles
commit
|
commitdiff
|
tree
2014-10-02
S
tephan
S
aalfeld
a
u
to-finalize constant
p
r
operties and
param
e
ters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan S
a
alfeld
threadsa
f
e
Util
s
.
ensure(File)
commit
|
commitdiff
|
tree
2014-06-06
Stephan
Saalfeld
fixed bug
i
n generat
i
on of
alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saa
l
feld
e
x
ternalized DistortionCorr
e
ction
.
r
u
n
t
o en
a
bl
e
call
i
ng
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
St
e
phan Sa
a
lfeld
E
c
l
i
pse autu
-
co
s
meti
c
s in D
i
stortionCorr
e
cti
o
n
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalf
e
l
d
Merge
branch
'
master'
i
nto inten
s
ity-transf
o
rm
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n
Sa
a
lfeld
use standard writer for coo
r
di
n
a
tetransforms
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Sa
a
lfeld
dep
e
nd on javax
.
m
e
dia for jai
commit
|
commitdiff
|
tree
2014-05-19
S
te
p
han Saa
l
feld
added methods
for d
o
w
n
s
amplin
g
mor
e
t
h
a
n
o
n
e
le
v
e
l
commit
|
commitdiff
|
tree
2013-10-10
St
e
phan Saalfeld
replaced plugins
.
conf
i
g
w
i
th the Fiji v
e
rsion
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Merge br
a
nch
'
master' of ssh://repo
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
han S
a
alfe
l
d
Me
r
ge branch 'mast
e
r' of ssh://repo
.
or
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalf
e
ld
Parallel pairOverl
a
ppingTiles did not
w
ork and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
Merg
e
branch 'master'
o
f ssh://
r
e
p
o
.
or
.
cz/srv/git/
t
ra
k
em2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-ad
d
ed legac
y
op
t
imizer
f
or spring m
e
shes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T2-N
I
T/pom
.
x
m
l can inherit version number from par
e
n
t
commit
|
commitdiff
|
tree
2013-08-14
S
t
eph
a
n
S
aalfeld
added
m
i
ssing
dependencies to java3d core-uti
l
s
a
nd
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
ephan Saalfeld
set par
e
nt pom of pom-t
r
akem2 to pom-fiji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge b
r
anc
h
'sp
r
ing-mesh
2
' of ssh:/
/
repo
.
or
.
cz
/
srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
teph
a
n Saalfeld
M
e
r
g
e bran
c
h '
m
aster'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
a
l
feld
r
a
ised mpicbg
d
ep
e
n
dency ver
s
ion to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
eld
rai
s
ed d
e
pende
n
cy to Simple_Neurite_
T
racer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
Merge branch 'master' into
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
S
a
alfeld
ad
d
ed
comments and a
u
to-fin
a
lize i
n
Dis
t
ortionCorrecti
o
n
/
NLT
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
h
a
n Saalfeld
added mpicb
g
.
version as maven property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saalfeld
track mov
e
o
f the imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalfeld
Merge branc
h
'maste
r
'
in
t
o spring
-
mesh2
commit
|
commitdiff
|
tree
2013-03-05
Step
h
an Saa
l
feld
M
erge
b
ranch 'master
'
i
n
to spring-
m
esh2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n Sa
a
lfeld
use array
l
ist where arraylists are returned
commit
|
commitdiff
|
tree
2013-01-16
Step
h
an Saalfeld
a
d
just
m
picbg
spring-mesh2 whi
c
h
ne
e
ds les
s
damping
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan Saalfeld
Fi
x
ed
b
ug
in Patch
.
getFu
l
lCoordinateTran
s
form
t
hat
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saalfeld
Changed fixed
P
atches/Tiles input col
l
ec
t
i
o
n to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalf
e
l
d
Pair const
r
uctor has to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan S
a
alfe
l
d
forgot to set is
A
li
g
ne
d
fla
g
i
n elast
i
c
l
ayer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
el
a
stic mon
t
ag
e
par
a
m mu
s
t be public
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saalf
e
ld
added P
a
tch
.
getFullCordinat
e
Tr
a
nsform() whi
c
h generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan
S
aal
f
e
l
d
* removed isA
l
i
g
n
e
d
from Ab
s
tr
a
c
t
Pa
r
a
m cl
a
ss
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877: it is legal f
o
r
la
y
e
r
Thing to
be null
commit
|
commitdiff
|
tree
2012-12-21
Stepha
n
Saalfel
d
Correct
e
d
several long-standing issues with SI
F
T-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
R
e
gul
a
r
izedLayerAl
i
gnment got more flexib
l
e
A
PI methods
a
nd
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Sa
a
lfeld
clear
i
ng cache in layer al
i
g
nment must be default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
pr
i
nt optimiz
e
r
results and do not pri
n
t "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Sa
a
lfel
d
do not r
e
mo
v
e empty layers in layer
a
l
i
gnment
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan
Saalfeld
fi
x
ed
ver
s
ion number of mpicbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed merge error:
moved RobustNormalizeL
o
calC
o
ntrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalf
e
ld
multi-t
h
readed R
o
bustNormalizeLocalContra
s
t main body
commit
|
commitdiff
|
tree
next