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Version 2018.1
2018-03-21
Mark Abraham
V
e
r
sion
2
018
.
1
commit
|
commitdiff
|
tree
2018-03-21
Mark A
b
raham
Merge "Merge branch rele
a
s
e
-2016 into release-201
8
.
.
.
commit
|
commitdiff
|
tree
2018-03-21
Mark Abraham
Update re
l
ease note
s
for
2018
.
1
commit
|
commitdiff
|
tree
2018-03-20
Mark Abra
h
am
Merge branch
release-2016 into re
l
eas
e
-2018
commit
|
commitdiff
|
tree
2018-03-20
M
a
rk Abraham
Update use of g
p
u_id in Je
n
kins
commit
|
commitdiff
|
tree
2018-03-20
Berk Hess
D
isallo
w
sin
g
le simu
l
a
tion wi
t
h mul
t
is
i
m
commit
|
commitdiff
|
tree
2018-03-20
M
a
rk Abraham
Upd
a
te use of gpu_id in Jenki
n
s
commit
|
commitdiff
|
tree
2018-03-19
M
a
r
k Abraham
Fix V
S
X SIMD
w
i
th gcc 8
commit
|
commitdiff
|
tree
2018-03-16
Berk Hess
Correct
PMF sign err
o
r in AWH
bi
a
s
sharing
commit
|
commitdiff
|
tree
2018-03-14
Berk Hess
I
mprove int
e
r-
s
imul
a
t
ion
s
ig
n
a
l
ing
commit
|
commitdiff
|
tree
2018-03-14
B
e
r
k
Hess
Fix
m
d
r
un signalling with AWH bias sharing
commit
|
commitdiff
|
tree
2018-03-13
B
e
rk
Hess
Add AWH
fixes to release not
e
s
commit
|
commitdiff
|
tree
2018-03-13
Berk Hess
Fix AWH e
n
sem
b
l
e
checkpointin
g
commit
|
commitdiff
|
tree
2018-03-13
Berk Hess
Fix AWH d
e
conv
o
lution
w
hen sharing a bias
commit
|
commitdiff
|
tree
2018-03-13
Szilá
r
d Páll
Fix cl
a
ng 6
.
0 with CUDA 9
.
0
commit
|
commitdiff
|
tree
2018-03-09
B
erk H
e
s
s
C
orrect
pdb2gmx -missi
n
g
o
p
ti
o
n
commit
|
commitdiff
|
tree
2018-03-06
M
ark Ab
r
aham
Fi
x
ed dvdlambda
for SHAKE + FE
commit
|
commitdiff
|
tree
2018-03-05
Szilárd Páll
Add to th
e
contributor s
e
ction
commit
|
commitdiff
|
tree
2018-03-01
B
e
rk H
e
ss
Detect
AMD SMT topology
commit
|
commitdiff
|
tree
2018-02-27
Mark Abrah
a
m
Fix G
P
U utils test
commit
|
commitdiff
|
tree
2018-02-26
Mar
k
Abrah
a
m
Permit def
i
ne
.
mdp f
i
eld to assign
v
a
lues
commit
|
commitdiff
|
tree
2018-02-26
Mark Abraham
O
rganize for recordin
g
2016-
e
r
a
release
notes and add
.
.
.
commit
|
commitdiff
|
tree
2018-02-23
Ber
k
Hess
Fix md integ
r
ator with Nose-Hoover co
u
pling
commit
|
commitdiff
|
tree
2018-02-16
Mar
k
Ab
r
a
ham
Merge bran
c
h rel
e
ase-20
1
6 into
release-20
1
8
commit
|
commitdiff
|
tree
2018-02-16
Mark Abraham
Bumped
p
atch
v
e
r
s
i
o
n for next release
commit
|
commitdiff
|
tree
2018-02-16
Ber
k
Hess
Co
r
rect multi
s
im MPI
b
arrier
commit
|
commitdiff
|
tree
2018-02-16
M
a
r
k Abraha
m
Version 2016
.
5
commit
|
commitdiff
|
tree
2018-02-14
Mark Abraham
Merge
b
ranch re
l
ease-2016 into relea
s
e-20
1
8
commit
|
commitdiff
|
tree
2018-02-14
Berk He
s
s
Fix range bug
i
n
a
dd_se
l
e
c
tion_groups in tngio
.
cpp
commit
|
commitdiff
|
tree
2018-02-14
Be
r
k Hess
F
ix grompp net charge che
c
k
commit
|
commitdiff
|
tree
2018-02-14
Be
r
k Hess
Fix gr
o
mpp net charge chec
k
commit
|
commitdiff
|
tree
2018-02-14
M
ark Ab
r
aham
P
r
epare r
e
lea
s
e
n
otes for 2018
.
1
commit
|
commitdiff
|
tree
2018-02-13
M
ark A
b
raham
Use death test only when s
u
pported
commit
|
commitdiff
|
tree
2018-02-08
Mark Abra
h
am
Merge "Merge branch
r
el
e
ase-2016 into rele
a
se-2018
.
.
.
commit
|
commitdiff
|
tree
2018-02-08
Mark
Abraham
Merge branch r
e
lease-
2
016 into rel
e
ase-2018
commit
|
commitdiff
|
tree
2018-02-06
M
a
rk Abraham
P
revent log fil
e
e
nergy
a
verage printing dividi
n
g
by
.
.
.
commit
|
commitdiff
|
tree
2018-01-24
Mark Ab
r
aham
Move Windows
icc
config t
o
pos
t
-submit tes
t
ing
commit
|
commitdiff
|
tree
2018-01-18
B
e
rk Hes
s
Fix COMM removal on part of t
h
e system
commit
|
commitdiff
|
tree
2018-01-17
Aleksei Iupino
v
Fix
b
ox sca
l
ing i
n
P
ME
m
ixed mod
e
commit
|
commitdiff
|
tree
2018-01-17
Berk Hess
Re-enable GPU
w
it
h
walls an
d
1 energy group
commit
|
commitdiff
|
tree
2018-01-16
Berk Hess
Avoid md
r
un echoing "No option -multi"
commit
|
commitdiff
|
tree
2018-01-11
Mark Abr
a
ham
B
u
m
ped version for
n
e
xt patch rel
e
ase
commit
|
commitdiff
|
tree
2018-01-11
Ma
r
k Ab
r
aham
Version
2
018
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Announce in user log fi
l
e
s
that
features are deprecated
.
commit
|
commitdiff
|
tree
2018-01-11
Ro
l
and Sch
u
l
z
Fi
x
GMX_E
N
ABLE_AVX51
2
_
T
E
STS
being interna
l
commit
|
commitdiff
|
tree
2018-01-10
M
a
rk
Abrah
a
m
F
i
x automated GPU ID
assignme
n
t
commit
|
commitdiff
|
tree
2018-01-10
Szilár
d
Páll
U
ser guide u
p
dates to GPU section
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
R
e
lease notes tweaks
commit
|
commitdiff
|
tree
2018-01-10
Mark Abraham
Add rele
a
se notes to source repo
commit
|
commitdiff
|
tree
2018-01-10
E
rik Lindahl
Impr
o
ve pdb
2
gmx for nonstandard re
s
idue types
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
I
nstall guide
u
pd
a
t
es
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
E
nviron
m
ent vari
a
ble
d
o
c
s maintenance
commit
|
commitdiff
|
tree
2018-01-10
Aleks
e
i Iupinov
Do not pr
i
nt PME counter breakdown if
it's
empty
commit
|
commitdiff
|
tree
2018-01-10
Mar
k
Abra
h
am
Hand
l
e
e
rroneous command line args better
commit
|
commitdiff
|
tree
2018-01-10
Erik Lindahl
Cl
a
r
ified gmx rmsf docu
m
e
n
t
a
tion
commit
|
commitdiff
|
tree
2018-01-09
Mark Abraham
Clea
n
up user guide for rele
a
se
commit
|
commitdiff
|
tree
2018-01-09
Mark Abraham
Merge branch release
-
201
6
into release-2018
commit
|
commitdiff
|
tree
2018-01-09
B
e
r
k
H
ess
Do not tu
r
n on
DLB at re
p
lica exchange
commit
|
commitdiff
|
tree
2018-01-04
Erik
L
indahl
Implement
c
hanges for CMake policy 0068
commit
|
commitdiff
|
tree
2018-01-04
Mark A
b
ra
h
am
A
d
d
te
s
t config of GPU b
u
ild on slave with
o
u
t GPU
commit
|
commitdiff
|
tree
2018-01-04
Paul Bauer
Fix gmx
m
sd w
h
en usi
n
g
COM removal a
n
d
molecules
commit
|
commitdiff
|
tree
2018-01-03
Erik L
i
ndahl
Fix i
n
d
e
x error in gmx chi
commit
|
commitdiff
|
tree
2018-01-03
Paul Bauer
Correct dihe
d
ral restrai
n
t
sec
t
i
o
n in Manual
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
Avoi
d
FTZ triggering simd test fail
u
r
es
commit
|
commitdiff
|
tree
2018-01-02
Erik Lin
d
ahl
Fix OpenCL compiles
o
n Mac OS
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
I
mp
r
ove manual from comments by Ga
n
g Liu
commit
|
commitdiff
|
tree
2018-01-02
E
r
ik Lindahl
Make it explic
i
t that
time u
n
i
t
s apply to
b
egin/end
.
.
.
commit
|
commitdiff
|
tree
2018-01-02
Erik L
i
ndahl
Don't require ma
t
ching names
b
etween rtp
and tdb files
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
D
on'
t
write reference pull group 0
t
o log
commit
|
commitdiff
|
tree
2017-12-30
Ma
r
k Abraham
Firs
t
release c
a
n
d
idate fo
r
version
2018
commit
|
commitdiff
|
tree
2017-12-26
E
r
ik Lindahl
Fi
x
builds
on ARM
& clari
f
y (ARM) GPU
s
u
p
port
commit
|
commitdiff
|
tree
2017-12-22
Mark Abraham
Merg
e
branch
release-20
1
6 in
t
o relea
s
e-2018
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
M
e
rge branch release-5-1 int
o
releas
e
-20
1
6
commit
|
commitdiff
|
tree
2017-12-21
Mark Abra
h
a
m
Bu
m
p minor v
e
r
sio
n
for theoretical new
release
commit
|
commitdiff
|
tree
2017-12-21
Pascal Merz
Documentatio
n
and
fixes for physical validation
commit
|
commitdiff
|
tree
2017-12-21
Mark A
b
rah
a
m
Update dou
b
l
e
-
precisio
n
t
e
st configu
r
ations
commit
|
commitdiff
|
tree
2017-12-21
Roland
S
chulz
Up
d
a
t
e
checks f
o
r BuildOwnFFT
commit
|
commitdiff
|
tree
2017-12-20
M
a
rk Abraham
Use new
defa
u
ltRealTolerance() to stabilise some
t
ests
commit
|
commitdiff
|
tree
2017-12-20
M
a
rk Abraham
Mer
g
e
"Merge branch release
-
2016 into r
e
lease-20
1
8
.
.
.
commit
|
commitdiff
|
tree
2017-12-20
Mark Abraham
Merg
e
bran
c
h r
e
lease-
2
016
into re
l
ease
-
2018
commit
|
commitdiff
|
tree
2017-12-19
Mark
Abraham
Third beta
r
elease of 20
1
8
commit
|
commitdiff
|
tree
2017-12-19
Ma
r
k
A
brah
a
m
Fix table
t
ests
a
nd improve
t
abl
e
construction
commit
|
commitdiff
|
tree
2017-12-19
Berk
H
ess
Make ove
r
s
u
bscription
warning consi
s
tent
commit
|
commitdiff
|
tree
2017-12-19
Cars
t
en
Kutzner
Fix electric field
.
mdp docum
e
ntati
o
n
commit
|
commitdiff
|
tree
2017-12-19
Erik Lindahl
Use reduced def
a
ult tolerances
f
o
r
tpx compa
r
i
s
on
commit
|
commitdiff
|
tree
2017-12-18
R
oland S
c
h
u
lz
F
ix cmake
error with
e
mac
s
lock files i
n
p
l
a
ce
commit
|
commitdiff
|
tree
2017-12-17
Rola
n
d Schulz
Change avx_128_fma
b
uild to d
o
u
b
le
commit
|
commitdiff
|
tree
2017-12-17
R
o
land S
c
hulz
Sup
p
ort Simd4N for Si
m
dRea
l
W
i
dth<
4
commit
|
commitdiff
|
tree
2017-12-14
E
rik Li
n
d
ahl
Fix PBC error in gmx_spatial
commit
|
commitdiff
|
tree
2017-12-14
Mark Abra
h
am
Merge
"
Merge branch rele
a
se-2016 i
n
to r
e
lease-2
0
18
.
.
.
commit
|
commitdiff
|
tree
2017-12-12
Erik L
i
ndahl
Disal
l
ow
ascii format
s
fo
r
gmx
t
r
jcat
commit
|
commitdiff
|
tree
2017-12-12
Mark
A
braham
Improve
g
r
ompp m
i
ssi
n
g-parameters err
o
r me
s
sage
commit
|
commitdiff
|
tree
2017-12-12
Ma
r
k Abra
h
a
m
Me
r
ge branch release-2016 int
o
release
-
2018
commit
|
commitdiff
|
tree
2017-12-11
Mark Ab
r
aham
Second beta
r
e
leas
e
of 2018
commit
|
commitdiff
|
tree
2017-12-11
Erik Lind
a
hl
Remove duplicated
l
i
nes f
r
o
m OPLS ffbon
d
ed
.
itp
commit
|
commitdiff
|
tree
2017-12-11
R
olan
d
Schulz
R
e
place intr
i
nsic with inli
n
e asm for AVX512 unit te
s
t
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Don't warn about
N
VML
clo
c
k
s that are
a
t max
commit
|
commitdiff
|
tree
2017-12-11
Ber
k
Hess
Add grompp not
e
for PR pcoupl
e
+ position
r
e
straints
commit
|
commitdiff
|
tree
2017-12-10
E
r
ik Lindahl
Rever
t
"D
i
sable default-on
NVML
support in CMake"
commit
|
commitdiff
|
tree
2017-12-07
Erik Lindahl
Added cool q
u
ote from Viveca's defe
n
se
commit
|
commitdiff
|
tree
next