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2017-11-19	Mark Abraham	Fix FindCUDA.cmake for -Wundef	commit \| commitdiff \| tree
2017-11-17	Mark Abraham	Use HostAllocationPolicy for chargeA	commit \| commitdiff \| tree
2017-11-17	Mark Abraham	Add checking function for whether a buffer is pinned	commit \| commitdiff \| tree
2017-11-17	Mark Abraham	Improve handling of PME GPU force buffer	commit \| commitdiff \| tree
2017-11-10	Mark Abraham	Import cmake Modules/FindCUDA.cmake	commit \| commitdiff \| tree
2017-11-09	Mark Abraham	Prepared t_mdatoms for using vector	commit \| commitdiff \| tree
2017-11-09	Mark Abraham	Introduce HostAllocationPolicy	commit \| commitdiff \| tree
2017-11-07	Mark Abraham	Reform gmx_pme_pp alloc and use vector	commit \| commitdiff \| tree
2017-11-07	Mark Abraham	Introduce gmxopencl.h	commit \| commitdiff \| tree
2017-11-07	Mark Abraham	Test clang on ARM in nightly matrix	commit \| commitdiff \| tree
2017-11-07	Mark Abraham	Improve PME includes	commit \| commitdiff \| tree
2017-11-03	Mark Abraham	Merge "Merge branch release-2016"	commit \| commitdiff \| tree
2017-11-02	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-11-01	Mark Abraham	Fix thread-MPI rank choice for orientation restraints	commit \| commitdiff \| tree
2017-11-01	Mark Abraham	Improve handling of GPU IDs	commit \| commitdiff \| tree
2017-10-31	Mark Abraham	Update treatment of GPU compatibility data structure	commit \| commitdiff \| tree
2017-10-30	Mark Abraham	Fix and update hw_info	commit \| commitdiff \| tree
2017-10-27	Mark Abraham	Fix hw detection more	commit \| commitdiff \| tree
2017-10-26	Mark Abraham	Make release matrix work again	commit \| commitdiff \| tree
2017-10-26	Mark Abraham	New quote	commit \| commitdiff \| tree
2017-10-25	Mark Abraham	Teach the copyright checker about template.cpp	commit \| commitdiff \| tree
2017-10-20	Mark Abraham	Clarify docs for Fmax in EM	commit \| commitdiff \| tree
2017-10-20	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-10-16	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-10-13	Mark Abraham	Update tests for C++11 compiler and standard library	commit \| commitdiff \| tree
2017-10-13	Mark Abraham	Fix cpuinfo on clang + non-x86	commit \| commitdiff \| tree
2017-10-11	Mark Abraham	Introduced header for communication to/from PME ranks	commit \| commitdiff \| tree
2017-10-11	Mark Abraham	Cleaned up ewaldcoeff for PME-only ranks	commit \| commitdiff \| tree
2017-10-11	Mark Abraham	Use clang-5 in Jenkins	commit \| commitdiff \| tree
2017-10-07	Mark Abraham	Tell cppcheck that .cpp and .cu files are c++	commit \| commitdiff \| tree
2017-10-05	Mark Abraham	Continue removing -nb gpu_cpu	commit \| commitdiff \| tree
2017-10-04	Mark Abraham	Enable group-scheme SIMD with GMX_SIMD=AVX2_128	commit \| commitdiff \| tree
2017-10-03	Mark Abraham	Introduce and use AlignedAllocationPolicy	commit \| commitdiff \| tree
2017-09-19	Mark Abraham	Update testing matrices to test with (latest) icc-18	commit \| commitdiff \| tree
2017-09-17	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-09-15	Mark Abraham	Express intent of matrix release build types explicitly	commit \| commitdiff \| tree
2017-09-15	Mark Abraham	Bumped patch version for next release	commit \| commitdiff \| tree
2017-09-15	Mark Abraham	Version 2016.4	commit \| commitdiff \| tree
2017-09-14	Mark Abraham	Form taskassignment module	commit \| commitdiff \| tree
2017-09-14	Mark Abraham	Fix compat module definition	commit \| commitdiff \| tree
2017-09-12	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-09-07	Mark Abraham	Introduce type-safe GPU emulation variables	commit \| commitdiff \| tree
2017-09-07	Mark Abraham	Enable group-scheme SIMD kernels on recent AVX extensions	commit \| commitdiff \| tree
2017-09-06	Mark Abraham	Prepare Verlet scheme later in runner	commit \| commitdiff \| tree
2017-09-05	Mark Abraham	Fixes for Solaris	commit \| commitdiff \| tree
2017-09-05	Mark Abraham	Fix use of GPU information for thread-MPI setup	commit \| commitdiff \| tree
2017-09-03	Mark Abraham	Fix compiler flags for using MKL	commit \| commitdiff \| tree
2017-09-03	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2017-08-25	Mark Abraham	Fix flat-bottomed position restraints with multiple...	commit \| commitdiff \| tree
2017-08-23	Mark Abraham	Stopped checkpoint influencing parallelism setup	commit \| commitdiff \| tree
2017-08-22	Mark Abraham	Run GPU detection even for mdrun -nb cpu	commit \| commitdiff \| tree
2017-08-22	Mark Abraham	Fixed thread-MPI with non-default -npme	commit \| commitdiff \| tree
2017-08-22	Mark Abraham	Fix missing declaration of GMX_UNUSED_VALUE	commit \| commitdiff \| tree
2017-08-22	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-08-21	Mark Abraham	Moved increase_nstlist() to nbnxn_tuning.h	commit \| commitdiff \| tree
2017-08-21	Mark Abraham	Fix compilation issues with ARM SIMD	commit \| commitdiff \| tree
2017-08-17	Mark Abraham	Replace consistency checking with assertion	commit \| commitdiff \| tree
2017-08-16	Mark Abraham	Parse user-supplied GPU task assignment only when needed	commit \| commitdiff \| tree
2017-08-16	Mark Abraham	Remove duplicate GPU non-usage hint	commit \| commitdiff \| tree
2017-08-16	Mark Abraham	Moved logging functionality into GPU usage report	commit \| commitdiff \| tree
2017-08-15	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2017-08-15	Mark Abraham	Fix value of Ewald shift	commit \| commitdiff \| tree
2017-08-10	Mark Abraham	Clarify data flow in GPU task assignment	commit \| commitdiff \| tree
2017-08-07	Mark Abraham	Fix include dependency for getenv	commit \| commitdiff \| tree
2017-08-07	Mark Abraham	Simplified handling of GPU device IDs	commit \| commitdiff \| tree
2017-08-06	Mark Abraham	Simplify resource-division efficiency check	commit \| commitdiff \| tree
2017-08-06	Mark Abraham	Split printhardware from detecthardware	commit \| commitdiff \| tree
2017-08-06	Mark Abraham	Decouple task assignment from task execution	commit \| commitdiff \| tree
2017-08-06	Mark Abraham	Removed unused host-side allocation code	commit \| commitdiff \| tree
2017-08-04	Mark Abraham	Stop using hwinfo_g for reporting code	commit \| commitdiff \| tree
2017-08-03	Mark Abraham	Removed unused include statements	commit \| commitdiff \| tree
2017-08-01	Mark Abraham	Introduced Mdrunner high-level class	commit \| commitdiff \| tree
2017-07-27	Mark Abraham	Enhance cmake and releng handling of GMX_USE_RDTSCP	commit \| commitdiff \| tree
2017-07-24	Mark Abraham	Separated responsibility for consistency checking	commit \| commitdiff \| tree
2017-07-24	Mark Abraham	Remove unnecessary GPU checking code	commit \| commitdiff \| tree
2017-07-20	Mark Abraham	Cleaned up bUseGpu in runner	commit \| commitdiff \| tree
2017-07-20	Mark Abraham	Stop duplicate printing of detected GPUs	commit \| commitdiff \| tree
2017-07-20	Mark Abraham	Fix use of GMX_SIMD in own-fftw build	commit \| commitdiff \| tree
2017-07-19	Mark Abraham	Made post-submit config to test clang+openmp.	commit \| commitdiff \| tree
2017-07-19	Mark Abraham	Improve CMake implementation for GMX_SIMD	commit \| commitdiff \| tree
2017-07-18	Mark Abraham	Converted some const pointers into const references...	commit \| commitdiff \| tree
2017-07-18	Mark Abraham	Eliminated pick_nbnxn_resources	commit \| commitdiff \| tree
2017-07-14	Mark Abraham	Implemented grompp -po for options-style mdp handling	commit \| commitdiff \| tree
2017-07-14	Mark Abraham	Clean up cmake build host detection	commit \| commitdiff \| tree
2017-07-13	Mark Abraham	Clean up gmx_mdrun()	commit \| commitdiff \| tree
2017-07-13	Mark Abraham	Cleaned up mdrunner_start_threads	commit \| commitdiff \| tree
2017-07-13	Mark Abraham	More updates to testing matrix	commit \| commitdiff \| tree
2017-07-07	Mark Abraham	Refactor error handling in init_gpu	commit \| commitdiff \| tree
2017-07-06	Mark Abraham	Simplify gmx_gpu_opt_t	commit \| commitdiff \| tree
2017-07-04	Mark Abraham	Clean up pick_nbnxn_resources	commit \| commitdiff \| tree
2017-07-01	Mark Abraham	Cleaned up GPU emulation logic	commit \| commitdiff \| tree
2017-06-28	Mark Abraham	Cleaned up high-level boolean variable naming	commit \| commitdiff \| tree
2017-06-28	Mark Abraham	Fix specification for gcc-6	commit \| commitdiff \| tree
2017-06-28	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2017-06-27	Mark Abraham	Minor improvements to test configs	commit \| commitdiff \| tree
2017-06-22	Mark Abraham	Consolidated logic for choosing number of thread-MPI...	commit \| commitdiff \| tree
2017-06-22	Mark Abraham	Replace misnamed nbnxn_gpu_acceleration_supported	commit \| commitdiff \| tree
2017-06-22	Mark Abraham	Consolidate and fix logic for mdrun -nb and -gpuid	commit \| commitdiff \| tree
2017-06-21	Mark Abraham	Reform ngpu variable	commit \| commitdiff \| tree
2017-06-21	Mark Abraham	Remove bUserSetGpuIds field	commit \| commitdiff \| tree
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