Fix grompp unbound atom check
[gromacs.git] / admin / uncrustify.sh
blob5e98a11e90d3cf8ec3e9f88e4082bf69948f7446
1 #!/bin/bash
3 # This file is part of the GROMACS molecular simulation package.
5 # Copyright (c) 2013,2014,2015,2019, by the GROMACS development team, led by
6 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
7 # and including many others, as listed in the AUTHORS file in the
8 # top-level source directory and at http://www.gromacs.org.
10 # GROMACS is free software; you can redistribute it and/or
11 # modify it under the terms of the GNU Lesser General Public License
12 # as published by the Free Software Foundation; either version 2.1
13 # of the License, or (at your option) any later version.
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16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
18 # Lesser General Public License for more details.
20 # You should have received a copy of the GNU Lesser General Public
21 # License along with GROMACS; if not, see
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25 # If you want to redistribute modifications to GROMACS, please
26 # consider that scientific software is very special. Version
27 # control is crucial - bugs must be traceable. We will be happy to
28 # consider code for inclusion in the official distribution, but
29 # derived work must not be called official GROMACS. Details are found
30 # in the README & COPYING files - if they are missing, get the
31 # official version at http://www.gromacs.org.
33 # To help us fund GROMACS development, we humbly ask that you cite
34 # the research papers on the package. Check out http://www.gromacs.org.
36 # This script runs uncrustify on modified files and
37 # reports/applies the necessary changes.
39 # See `uncrustify.sh -h` for a brief usage, and docs/dev-manual/code-formatting.rst
40 # for more details.
42 # Parse command-line arguments
43 function usage() {
44 echo "usage: uncrustify.sh [-f|--force] [--rev=REV]"
45 echo " [--uncrustify=(off|check)]"
46 echo " [--warnings=<file>] [<action>]"
47 echo "<action>: (check*|diff|update)[-(index|workdir*)] (*=default)"
50 action="check-workdir"
51 declare -a diffargs
52 baserev="HEAD"
53 force=
54 uncrustify_mode=check
55 warning_file=
56 for arg in "$@" ; do
57 if [[ "$arg" == "check-index" || "$arg" == "check-workdir" || \
58 "$arg" == "diff-index" || "$arg" == "diff-workdir" || \
59 "$arg" == "update-index" || "$arg" == "update-workdir" ]]
60 then
61 action=$arg
62 elif [[ "$arg" == "check" || "$arg" == "diff" || "$arg" == "update" ]] ; then
63 action=$arg-workdir
64 elif [[ "$action" == diff-* ]] ; then
65 diffargs+=("$arg")
66 elif [[ "$arg" == --uncrustify=* ]] ; then
67 uncrustify_mode=${arg#--uncrustify=}
68 if [[ "$uncrustify_mode" != "off" && "$uncrustify_mode" != "check" ]] ; then
69 echo "Unknown option: $arg"
70 echo
71 usage
72 exit 2
74 elif [[ "$arg" == "-f" || "$arg" == "--force" ]] ; then
75 force=1
76 elif [[ "$arg" == --rev=* ]] ; then
77 baserev=${arg#--rev=}
78 elif [[ "$arg" == --warnings=* ]] ; then
79 warning_file=${arg#--warnings=}
80 elif [[ "$arg" == "-h" || "$arg" == "--help" ]] ; then
81 usage
82 exit 0
83 else
84 echo "Unknown option: $arg"
85 echo
86 usage
87 exit 2
89 done
91 # Check that uncrustify is present
92 if [[ "$uncrustify_mode" != "off" ]]
93 then
94 if [ -z "$UNCRUSTIFY" ]
95 then
96 UNCRUSTIFY=`git config hooks.uncrustifypath`
98 if [ -z "$UNCRUSTIFY" ]
99 then
100 echo "Please set the path to uncrustify using UNCRUSTIFY or"
101 echo "git config hooks.uncrustifypath."
102 echo "Note that you need a custom version of uncrustify."
103 echo "See docs/dev-manual/uncrustify.rst for how to get one."
104 exit 2
106 if ! which "$UNCRUSTIFY" 1>/dev/null
107 then
108 echo "Uncrustify not found: $UNCRUSTIFY"
109 exit 2
113 # Switch to the root of the source tree and check the config file
114 srcdir=`git rev-parse --show-toplevel`
115 pushd $srcdir >/dev/null
116 admin_dir=$srcdir/admin
117 cfg_file=$admin_dir/uncrustify.cfg
118 if [ ! -f "$cfg_file" ]
119 then
120 echo "Uncrustify configuration file not found: $cfg_file"
121 exit 2
124 # Actual processing starts: create a temporary directory
125 tmpdir=`mktemp -d -t gmxuncrust.XXXXXX`
127 # Produce a list of changed files
128 # Only include files that have proper filter set in .gitattributes
129 internal_diff_args=
130 if [[ $action == *-index ]]
131 then
132 internal_diff_args="--cached"
134 git diff-index $internal_diff_args --diff-filter=ACMR $baserev >$tmpdir/difflist
135 cut -f2 <$tmpdir/difflist | \
136 git check-attr --stdin filter | \
137 sed -e 's/.*: filter: //' | \
138 paste $tmpdir/difflist - | \
139 grep -E '(complete_formatting|uncrustify|copyright|includesort)$' >$tmpdir/filtered
140 cut -f2 <$tmpdir/filtered >$tmpdir/filelist_all
141 grep -E '(uncrustify)$' <$tmpdir/filtered | \
142 cut -f2 >$tmpdir/filelist_uncrustify
143 git diff-files --name-only | grep -Ff $tmpdir/filelist_all >$tmpdir/localmods
145 # Extract changed files to a temporary directory
146 mkdir $tmpdir/org
147 if [[ $action == *-index ]] ; then
148 git checkout-index --prefix=$tmpdir/org/ --stdin <$tmpdir/filelist_all
149 else
150 rsync --files-from=$tmpdir/filelist_all $srcdir $tmpdir/org
152 # Duplicate the original files to a separate directory, where all changes will
153 # be made.
154 cp -r $tmpdir/org $tmpdir/new
156 # Create output file for what was done (in case no messages get written)
157 touch $tmpdir/messages
159 # Run uncrustify on the temporary directory
160 cd $tmpdir/new
161 if [[ $uncrustify_mode != "off" ]] ; then
162 if ! $UNCRUSTIFY -c $cfg_file -F $tmpdir/filelist_uncrustify --no-backup >$tmpdir/uncrustify.out 2>&1 ; then
163 echo "Reformatting failed. Check uncrustify output below for errors:"
164 cat $tmpdir/uncrustify.out
165 rm -rf $tmpdir
166 exit 2
168 # Find the changed files if necessary
169 if [[ $action != diff-* ]] ; then
170 msg="needs uncrustify"
171 if [[ $action == update-* ]] ; then
172 msg="uncrustified"
174 git diff --no-index --name-only ../org/ . | \
175 awk -v msg="$msg" '{sub(/.\//,""); print $0 ": " msg}' >> $tmpdir/messages
177 # TODO: Consider checking whether rerunning uncrustify causes additional changes
180 cd $tmpdir
182 # If a diff was requested, show it and we are done
183 if [[ $action == diff-* ]] ; then
184 git diff --no-index --no-prefix "${diffargs[@]}" org/ new/
185 rm -rf $tmpdir
186 exit 0
189 # Find the changed files
190 git diff --no-index --name-only --exit-code org/ new/ | \
191 sed -e 's#new/##' > $tmpdir/changed
192 changes=
193 if [[ -s $tmpdir/changed ]]
194 then
195 changes=1
198 # Check if changed files have changed outside the index
199 if grep -Ff $tmpdir/localmods $tmpdir/changed > $tmpdir/conflicts
200 then
201 awk '{print $0 ": has changes in work tree"}' $tmpdir/conflicts \
202 >> $tmpdir/messages
203 if [[ ! $force && $action == update-* ]] ; then
204 echo "Modified files found in work tree, skipping update. Use -f to override."
205 echo "The following would have been done:"
206 sort $tmpdir/messages
207 rm -rf $tmpdir
208 exit 2
212 # Update the index/work tree if requested
213 if [[ $action == update-index ]] ; then
214 grep -Ff $tmpdir/changed $tmpdir/filtered > $tmpdir/tohash
215 cd $tmpdir/new
216 IFS='
218 for change in `cut -f2 $tmpdir/tohash | \
219 git --git-dir=$srcdir/.git hash-object -w --stdin-paths --no-filters | \
220 paste - $tmpdir/tohash`
222 # NOTE: the patterns below contain literal tabs
223 sha1=${change%% *}
224 rest=${change#* }
225 mode=${rest:8:6}
226 path=${rest#* }
227 path=${path%% *}
228 # Contains a literal tab
229 echo "$mode $sha1 $path" >> $tmpdir/toindex
230 done
231 unset IFS
232 git --git-dir=$srcdir/.git update-index --index-info < $tmpdir/toindex
233 elif [[ $action == update-workdir ]] ; then
234 rsync --files-from=$tmpdir/changed $tmpdir/new/ $srcdir/
237 # Get back to the original directory
238 popd >/dev/null
240 # Report what was done
241 sort $tmpdir/messages | tee $warning_file
243 rm -rf $tmpdir
244 exit $changes