| 2008-05-10 |
Michael Coleman | add chase_error (better error messages to user), hex...
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commit | commitdiff | tree |
| 2008-05-09 |
Michael Coleman | fix: continue handling candidate spectra after tie
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commit | commitdiff | tree |
| 2008-05-09 |
Michael Coleman | fix logging statement
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commit | commitdiff | tree |
| 2008-05-07 |
Michael Coleman | minor logging cleanups, close a file
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commit | commitdiff | tree |
| 2008-05-07 |
Michael Coleman | Merge branches 'chase-noasync' and 'sp-streaming'
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commit | commitdiff | tree |
| 2008-05-07 |
Michael Coleman | chase: switch asyncore implementation to socket/generator
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commit | commitdiff | tree |
| 2008-04-29 |
Michael Coleman | validate: switch to proper logging
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commit | commitdiff | tree |
| 2008-04-29 |
Michael Coleman | validate: automatic saturation fall-back
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commit | commitdiff | tree |
| 2008-04-29 |
Michael Coleman | validate: add maximum Sp rank limit, make FDR adjustment...
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commit | commitdiff | tree |
| 2008-04-27 |
Michael Coleman | validate: prefix saturation, --output-peptides, adjust...
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commit | commitdiff | tree |
| 2008-04-26 |
Michael Coleman | validate: add min spectra per locus and saturation...
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commit | commitdiff | tree |
| 2008-04-22 |
Mike Coleman | validate: FDR adjustment, fix marking of bad charges
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commit | commitdiff | tree |
| 2008-01-18 |
Michael Coleman | cosmetic cleanups: better messages, var name changes...
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commit | commitdiff | tree |
| 2008-01-18 |
Michael Coleman | buglet fix: $0 might include whole absolute path
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commit | commitdiff | tree |
| 2008-01-18 |
Michael Coleman | buglet fix: undefined var on single input glw file
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commit | commitdiff | tree |
| 2008-01-17 |
Michael Coleman | Don't use the fileinput module to read FASTA files...
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commit | commitdiff | tree |
| 2008-01-17 |
Michael Coleman | get rid of multipart options for --work-slice and ...
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commit | commitdiff | tree |
| 2008-01-14 |
Michael Coleman | minor cleanups
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commit | commitdiff | tree |
| 2008-01-12 |
Michael Coleman | zap 'greylag-python' in favor of just 'python'
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commit | commitdiff | tree |
| 2008-01-10 |
Michael Coleman | minor wording fixes
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commit | commitdiff | tree |
| 2007-12-08 |
Michael Coleman | Add methox test case.
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commit | commitdiff | tree |
| 2007-12-05 |
Michael Coleman | use greylag.q queue and default to 3000 parts
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commit | commitdiff | tree |
| 2007-12-05 |
Michael Coleman | Implement --list-peptides option.
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commit | commitdiff | tree |
| 2007-11-28 |
Michael Coleman | greylag-solo: if we're testing, call the corresponding...
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commit | commitdiff | tree |
| 2007-11-28 |
Michael Coleman | minor code reorg (use new Python if/else operator)
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commit | commitdiff | tree |
| 2007-11-28 |
Michael Coleman | bug fix: parent mass delta wasn't being added in for...
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commit | commitdiff | tree |
| 2007-11-27 |
Michael Coleman | Merged sqt-filter into greylag-validate. This version...
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commit | commitdiff | tree |
| 2007-05-03 |
Michael Coleman | update README and TODO
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commit | commitdiff | tree |
| 2007-05-03 |
Michael Coleman | rename XTP to GLP
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commit | commitdiff | tree |
| 2007-05-03 |
Michael Coleman | zap a bit of dead code; cleanups; update TODO list
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commit | commitdiff | tree |
| 2007-05-03 |
Michael Coleman | update sloccount stats: slightly smaller since redesign (!)
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commit | commitdiff | tree |
| 2007-05-02 |
Michael Coleman | update mass tracing--now works for basic cases
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commit | commitdiff | tree |
| 2007-05-02 |
Michael Coleman | greylag-sge-slice: rearrange code
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commit | commitdiff | tree |
| 2007-05-02 |
Michael Coleman | greylag-process lockfile bug fix, plus use new greylag...
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commit | commitdiff | tree |
| 2007-04-29 |
Michael Coleman | opt: minor deSTL optimization (mass ladder as double...
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commit | commitdiff | tree |
| 2007-04-29 |
Michael Coleman | opt: minor deSTL optimization (theoretical ladders)
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commit | commitdiff | tree |
| 2007-04-29 |
Michael Coleman | opt: minor deSTL optimization in score_spectrum (3...
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commit | commitdiff | tree |
| 2007-04-29 |
Michael Coleman | opt: minor deSTL optimization in score_spectrum (2)
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commit | commitdiff | tree |
| 2007-04-28 |
Michael Coleman | opt: minor deSTL optimization in score_spectrum
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commit | commitdiff | tree |
| 2007-04-26 |
Michael Coleman | Update greylag-solo and tests, plus bug fixes.
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commit | commitdiff | tree |
| 2007-04-25 |
Michael Coleman | update TODO list
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commit | commitdiff | tree |
| 2007-04-25 |
Michael Coleman | optimizations and minor cleanups
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commit | commitdiff | tree |
| 2007-04-24 |
Michael Coleman | Cleanups: dead code removal/etc.
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commit | commitdiff | tree |
| 2007-04-23 |
Michael Coleman | Update install target with new scripts (and "_" naming)
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commit | commitdiff | tree |
| 2007-04-23 |
Michael Coleman | Add greylag_merge. Changes to result pickle format...
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commit | commitdiff | tree |
| 2007-04-21 |
Michael Coleman | Zap .bz2 compression
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commit | commitdiff | tree |
| 2007-04-21 |
Michael Coleman | Update some unit tests.
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commit | commitdiff | tree |
| 2007-04-21 |
Michael Coleman | Rename python scripts to make them importable.
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commit | commitdiff | tree |
| 2007-04-21 |
Michael Coleman | Eliminate spectra w/candidates statistic.
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commit | commitdiff | tree |
| 2007-04-20 |
Michael Coleman | Check sequence db locus name uniqueness
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commit | commitdiff | tree |
| 2007-04-20 |
Michael Coleman | Add basic consistency check for spectrum indices
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commit | commitdiff | tree |
| 2007-04-20 |
Michael Coleman | Change parent tolerance to mz units (scaling by charge)
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commit | commitdiff | tree |
| 2007-04-20 |
Michael Coleman | update TODO list
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commit | commitdiff | tree |
| 2007-04-19 |
Michael Coleman | Rudimentary SQT file generation works; plus other fixes...
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commit | commitdiff | tree |
| 2007-04-18 |
Michael Coleman | basic search runs (w/pickle output only)
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commit | commitdiff | tree |
| 2007-04-13 |
Michael Coleman | do MyriMatch-style filtering; add min/max parent mass...
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commit | commitdiff | tree |
| 2007-03-08 |
Michael Coleman | Add more tests (cgreylag spectrum functions, small...
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commit | commitdiff | tree |
| 2007-03-08 |
Michael Coleman | greylag.py: Don't exit on error unless we're __main__
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commit | commitdiff | tree |
| 2007-03-08 |
Michael Coleman | whitespace cleanups
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commit | commitdiff | tree |
| 2007-03-06 |
Michael Coleman | Add basic unit test suite, plus minor bugfixes
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commit | commitdiff | tree |
| 2007-03-04 |
Michael Coleman | Add basic doctests, plus Makefile 'test' target
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commit | commitdiff | tree |
| 2007-03-03 |
Michael Coleman | remove unneeded logging shutdown call, syntax cleanup
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commit | commitdiff | tree |
| 2007-03-03 |
Michael Coleman | Use new python2.5 features (with, defaultdict, etc)
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commit | commitdiff | tree |
| 2007-03-03 |
Michael Coleman | .gitignore: *.pyc, *.pyo
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commit | commitdiff | tree |
