Don't use the fileinput module to read FASTA files (it's less correct)
tree9e7ea5f5c030a3f5bb13a2260829f7b9ecba27d7
-rw-r--r-- 54 .gitignore
-rw-r--r-- 35147 COPYING
-rw-r--r-- 2769 Makefile
-rw-r--r-- 2040 NOTES
-rw-r--r-- 4480 README
drwxr-xr-x - SIMR
-rw-r--r-- 7751 TODO
-rw-r--r-- 30906 cgreylag.cpp
-rw-r--r-- 10491 cgreylag.hpp
-rw-r--r-- 3159 cgreylag.i
-rwxr-xr-x 54741 greylag_chase.py
-rwxr-xr-x 3066 greylag_index_spectra.py
-rwxr-xr-x 5945 greylag_merge.py
-rwxr-xr-x 5539 greylag_solo.py
-rwxr-xr-x 8143 greylag_sqt.py
-rwxr-xr-x 15460 greylag_validate.py
drwxr-xr-x - test