lisp/org/ob-python.el

   1 ;;; ob-python.el --- org-babel functions for python evaluation
   2
   3 ;; Copyright (C) 2009, 2010, 2011  Free Software Foundation
   4
   5 ;; Author: Eric Schulte, Dan Davison
   6 ;; Keywords: literate programming, reproducible research
   7 ;; Homepage: http://orgmode.org
   8 ;; Version: 7.4
   9
  10 ;; This file is part of GNU Emacs.
  11
  12 ;; GNU Emacs is free software: you can redistribute it and/or modify
  13 ;; it under the terms of the GNU General Public License as published by
  14 ;; the Free Software Foundation, either version 3 of the License, or
  15 ;; (at your option) any later version.
  16
  17 ;; GNU Emacs is distributed in the hope that it will be useful,
  18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  20 ;; GNU General Public License for more details.
  21
  22 ;; You should have received a copy of the GNU General Public License
  23 ;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
  24
  25 ;;; Commentary:
  26
  27 ;; Org-Babel support for evaluating python source code.
  28
  29 ;;; Code:
  30 (require 'ob)
  31 (require 'ob-ref)
  32 (require 'ob-comint)
  33 (require 'ob-eval)
  34 (eval-when-compile (require 'cl))
  35
  36 (declare-function org-remove-indentation "org" )
  37 (declare-function py-shell "ext:python-mode" (&optional argprompt))
  38 (declare-function run-python "ext:python" (&optional cmd noshow new))
  39
  40 (add-to-list 'org-babel-tangle-lang-exts '("python" . "py"))
  41
  42 (defvar org-babel-default-header-args:python '())
  43
  44 (defvar org-babel-python-command "python"
  45   "Name of command for executing python code.")
  46
  47 (defvar org-babel-python-mode (if (featurep 'xemacs) 'python-mode 'python)
  48   "Preferred python mode for use in running python interactively.")
  49
  50 (defvar org-src-preserve-indentation)
  51
  52 (defun org-babel-execute:python (body params)
  53   "Execute a block of Python code with Babel.
  54 This function is called by `org-babel-execute-src-block'."
  55   (let* ((session (org-babel-python-initiate-session
  56                    (cdr (assoc :session params))))
  57          (result-params (cdr (assoc :result-params params)))
  58          (result-type (cdr (assoc :result-type params)))
  59          (return-val (when (and (eq result-type 'value) (not session))
  60                        (cdr (assoc :return params))))
  61          (preamble (cdr (assoc :preamble params)))
  62          (full-body
  63           (org-babel-expand-body:generic
  64            (concat body (if return-val (format "return %s" return-val) ""))
  65            params (org-babel-variable-assignments:python params)))
  66          (result (org-babel-python-evaluate
  67                   session full-body result-type result-params preamble)))
  68     (or (cdr (assoc :file params))
  69         (org-babel-reassemble-table
  70          result
  71          (org-babel-pick-name (cdr (assoc :colname-names params))
  72                               (cdr (assoc :colnames params)))
  73          (org-babel-pick-name (cdr (assoc :rowname-names params))
  74                               (cdr (assoc :rownames params)))))))
  75
  76 (defun org-babel-prep-session:python (session params)
  77   "Prepare SESSION according to the header arguments in PARAMS.
  78 VARS contains resolved variable references"
  79   (let* ((session (org-babel-python-initiate-session session))
  80          (var-lines
  81           (org-babel-variable-assignments:python params)))
  82     (org-babel-comint-in-buffer session
  83       (mapc (lambda (var)
  84               (end-of-line 1) (insert var) (comint-send-input)
  85               (org-babel-comint-wait-for-output session)) var-lines))
  86     session))
  87
  88 (defun org-babel-load-session:python (session body params)
  89   "Load BODY into SESSION."
  90   (save-window-excursion
  91     (let ((buffer (org-babel-prep-session:python session params)))
  92       (with-current-buffer buffer
  93         (goto-char (process-mark (get-buffer-process (current-buffer))))
  94         (insert (org-babel-chomp body)))
  95       buffer)))
  96
  97 ;; helper functions
  98
  99 (defun org-babel-variable-assignments:python (params)
 100   "Return list of python statements assigning the block's variables"
 101   (mapcar
 102    (lambda (pair)
 103      (format "%s=%s"
 104              (car pair)
 105              (org-babel-python-var-to-python (cdr pair))))
 106    (mapcar #'cdr (org-babel-get-header params :var))))
 107
 108 (defun org-babel-python-var-to-python (var)
 109   "Convert an elisp value to a python variable.
 110 Convert an elisp value, VAR, into a string of python source code
 111 specifying a variable of the same value."
 112   (if (listp var)
 113       (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
 114     (if (equal var 'hline)
 115         "None"
 116       (format
 117        (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S")
 118        var))))
 119
 120 (defun org-babel-python-table-or-string (results)
 121   "Convert RESULTS into an appropriate elisp value.
 122 If the results look like a list or tuple, then convert them into an
 123 Emacs-lisp table, otherwise return the results as a string."
 124   (org-babel-script-escape results))
 125
 126 (defvar org-babel-python-buffers '((:default . nil)))
 127
 128 (defun org-babel-python-session-buffer (session)
 129   "Return the buffer associated with SESSION."
 130   (cdr (assoc session org-babel-python-buffers)))
 131
 132 (defun org-babel-python-initiate-session-by-key (&optional session)
 133   "Initiate a python session.
 134 If there is not a current inferior-process-buffer in SESSION
 135 then create.  Return the initialized session."
 136   (require org-babel-python-mode)
 137   (save-window-excursion
 138     (let* ((session (if session (intern session) :default))
 139            (python-buffer (org-babel-python-session-buffer session)))
 140       (cond
 141        ((and (eq 'python org-babel-python-mode)
 142              (fboundp 'run-python)) ; python.el
 143         (run-python))
 144        ((and (eq 'python-mode org-babel-python-mode)
 145              (fboundp 'py-shell)) ; python-mode.el
 146         ;; `py-shell' creates a buffer whose name is the value of
 147         ;; `py-which-bufname' with '*'s at the beginning and end
 148         (let* ((bufname (if python-buffer
 149                             (replace-regexp-in-string ;; zap surrounding *
 150                              "^\\*\\([^*]+\\)\\*$" "\\1" python-buffer)
 151                           (concat "Python-" (symbol-name session))))
 152                (py-which-bufname bufname))
 153           (py-shell)
 154           (setq python-buffer (concat "*" bufname "*"))))
 155        (t
 156         (error "No function available for running an inferior python.")))
 157       (setq org-babel-python-buffers
 158             (cons (cons session python-buffer)
 159                   (assq-delete-all session org-babel-python-buffers)))
 160       session)))
 161
 162 (defun org-babel-python-initiate-session (&optional session params)
 163   "Create a session named SESSION according to PARAMS."
 164   (unless (string= session "none")
 165     (org-babel-python-session-buffer
 166      (org-babel-python-initiate-session-by-key session))))
 167
 168 (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
 169   "A string to indicate that evaluation has completed.")
 170 (defvar org-babel-python-wrapper-method
 171   "
 172 def main():
 173 %s
 174
 175 open('%s', 'w').write( str(main()) )")
 176 (defvar org-babel-python-pp-wrapper-method
 177   "
 178 import pprint
 179 def main():
 180 %s
 181
 182 open('%s', 'w').write( pprint.pformat(main()) )")
 183
 184 (defun org-babel-python-evaluate
 185   (session body &optional result-type result-params preamble)
 186   "Evaluate BODY as python code."
 187   (if session
 188       (org-babel-python-evaluate-session
 189        session body result-type result-params)
 190     (org-babel-python-evaluate-external-process
 191      body result-type result-params preamble)))
 192
 193 (defun org-babel-python-evaluate-external-process
 194   (body &optional result-type result-params preamble)
 195   "Evaluate BODY in external python process.
 196 If RESULT-TYPE equals 'output then return standard output as a
 197 string. If RESULT-TYPE equals 'value then return the value of the
 198 last statement in BODY, as elisp."
 199   (case result-type
 200     (output (org-babel-eval org-babel-python-command
 201                             (concat (if preamble (concat preamble "\n") "") body)))
 202     (value (let ((tmp-file (org-babel-temp-file "python-")))
 203              (org-babel-eval org-babel-python-command
 204                              (concat
 205                               (if preamble (concat preamble "\n") "")
 206                               (format
 207                                (if (member "pp" result-params)
 208                                    org-babel-python-pp-wrapper-method
 209                                  org-babel-python-wrapper-method)
 210                                (mapconcat
 211                                 (lambda (line) (format "\t%s" line))
 212                                 (split-string
 213                                  (org-remove-indentation
 214                                   (org-babel-trim body))
 215                                  "[\r\n]") "\n")
 216                                (org-babel-process-file-name tmp-file 'noquote))))
 217              ((lambda (raw)
 218                 (if (or (member "code" result-params)
 219                         (member "pp" result-params))
 220                     raw
 221                   (org-babel-python-table-or-string raw)))
 222               (org-babel-eval-read-file tmp-file))))))
 223
 224 (defun org-babel-python-evaluate-session
 225   (session body &optional result-type result-params)
 226   "Pass BODY to the Python process in SESSION.
 227 If RESULT-TYPE equals 'output then return standard output as a
 228 string. If RESULT-TYPE equals 'value then return the value of the
 229 last statement in BODY, as elisp."
 230   (flet ((dump-last-value
 231           (tmp-file pp)
 232           (mapc
 233            (lambda (statement) (insert statement) (comint-send-input))
 234            (if pp
 235                (list
 236                 "import pprint"
 237                 (format "open('%s', 'w').write(pprint.pformat(_))"
 238                         (org-babel-process-file-name tmp-file 'noquote)))
 239              (list (format "open('%s', 'w').write(str(_))"
 240                            (org-babel-process-file-name tmp-file 'noquote))))))
 241          (input-body (body)
 242                      (mapc (lambda (statement) (insert statement) (comint-send-input))
 243                            (split-string (org-babel-trim body) "[\r\n]+"))
 244                      (comint-send-input) (comint-send-input)))
 245     (case result-type
 246       (output
 247        (mapconcat
 248         #'org-babel-trim
 249         (butlast
 250          (org-babel-comint-with-output
 251              (session org-babel-python-eoe-indicator t body)
 252            (let ((comint-process-echoes nil))
 253              (input-body body)
 254              (insert org-babel-python-eoe-indicator)
 255              (comint-send-input))) 2) "\n"))
 256       (value
 257        ((lambda (results)
 258           (if (or (member "code" result-params) (member "pp" result-params))
 259               results
 260             (org-babel-python-table-or-string results)))
 261         (let ((tmp-file (org-babel-temp-file "python-")))
 262           (org-babel-comint-with-output
 263               (session org-babel-python-eoe-indicator t body)
 264             (let ((comint-process-echoes nil))
 265               (input-body body)
 266               (dump-last-value tmp-file (member "pp" result-params))
 267               (comint-send-input) (comint-send-input)
 268               (insert org-babel-python-eoe-indicator)
 269               (comint-send-input)))
 270           (org-babel-eval-read-file tmp-file)))))))
 271
 272 (defun org-babel-python-read-string (string)
 273   "Strip 's from around python string"
 274   (if (string-match "^'\\([^\000]+\\)'$" string)
 275       (match-string 1 string)
 276     string))
 277
 278 (provide 'ob-python)
 279
 280
 281 ;;; ob-python.el ends here