Build.PL

   1 #!/usr/bin/perl -w
   2
   3 # This is a Module::Build script for BioPerl-Run installation.
   4 # See http://search.cpan.org/~kwilliams/Module-Build/lib/Module/Build.pm
   5
   6 use strict;
   7 use warnings;
   8 use Module::Build;
   9
  10 my $build = Module::Build->new(
  11     dist_name           => 'BioPerl-Run',
  12     dist_version        => '1.006900',
  13     module_name         => 'Bio::Run',
  14     dist_author         => 'BioPerl Team <bioperl-l@bioperl.org>',
  15     dist_abstract       => 'BioPerl-Run - wrapper toolkit',
  16     license             => 'perl',
  17     requires            => {
  18                             'perl'               => '5.6.1',
  19                             'Bio::Root::Version' => '1.006900'
  20                            },
  21     recommends          => {
  22                             'Algorithm::Diff'    => 0, # generating consensus protein family descriptions: Bio::Tools::Run::TribeMCL
  23                             'IPC::Run'           => 0, # Glimmer and Genemark application wrappers: Bio::Tools::Run::Glimmer Bio::Tools::Run::Genemark
  24                             'IO::String'         => 0, # generating Bio::Tree::Tree from strings: Bio::Tools::Run::Phylo::Phylip::Consense
  25                             'XML::Twig'          => 0,  # processing XML data: Bio::Tools::Run::EMBOSSacd
  26                             'File::Sort'         => 0  # BEDTools
  27                            },
  28     get_options         => {
  29                             accept  => { },
  30                             network => { }
  31                            },
  32     auto_features       => {
  33                             Network => {
  34                                         description => "Enable tests that need an internet connection",
  35                                         requires    => { 'LWP::UserAgent' => 0 }
  36                                        }
  37                            },
  38     dynamic_config      => 1,
  39     #create_makefile_pl  => 'passthrough'
  40 );
  41
  42 my $accept = $build->args->{accept};
  43
  44 # Optionally have script files installed.
  45 if ($accept ? 0 : $build->y_n("Install scripts? y/n", 'n')) {
  46     my $files = $build->_find_file_by_type('PLS', 'scripts');
  47
  48     my $script_build = File::Spec->catdir($build->blib, 'script');
  49
  50     my @tobp;
  51     while (my ($file, $dest) = each %$files) {
  52         $dest = 'bp_'.File::Basename::basename($dest);
  53         $dest =~ s/PLS$/pl/;
  54         $dest = File::Spec->catfile($script_build, $dest);
  55         $build->copy_if_modified(from => $file, to => $dest);
  56         push @tobp, $dest;
  57     }
  58
  59     $build->script_files(\@tobp);
  60 }
  61
  62 # Do network tests?
  63 my $do_network_tests = 0;
  64 if ($build->args('network')) {
  65     $do_network_tests = $build->feature('Network');
  66 }
  67 elsif ($build->feature('Network')) {
  68     $do_network_tests = $accept ? 0 : $build->y_n("Do you want to run tests that require connection to servers across the internet\n(likely to cause some failures)? y/n", 'n');
  69 }
  70
  71 if ($do_network_tests) {
  72     $build->notes(network => 1);
  73     $build->log_info("  - will run internet-requiring tests\n");
  74     my $use_email = $build->y_n("Do you want to run tests requiring a valid email address? y/n",'n');
  75     if ($use_email) {
  76         my $address = $build->prompt("Enter email address:");
  77         $build->notes(email => $address);
  78     }
  79 }
  80 else {
  81     $build->notes(network => 0);
  82     $build->log_info("  - will not run internet-requiring tests\n");
  83 }
  84
  85 # Create the build script and exit
  86 $build->create_build_script;
  87
  88 exit;