t/data/xprt.gb

   1 LOCUS       NC_012004               2095 bp    DNA     linear   BCT 07-MAY-2009
   2 DEFINITION  Streptococcus uberis 0140J, complete genome.
   3 ACCESSION   NC_012004 REGION: 843183..845277
   4 VERSION     NC_012004.1  GI:222152201
   5 DBLINK      Project:353
   6 KEYWORDS    complete genome.
   7 SOURCE      Streptococcus uberis 0140J
   8   ORGANISM  Streptococcus uberis 0140J
   9             Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
  10             Streptococcus.
  11 REFERENCE   1
  12   AUTHORS   Ward,P.N., Holden,M.T.G., Leigh,J.A., Lennard,N., Bignell,A.,
  13             Barron,A., Clark,L., Quail,M.A., Woodward,J., Barrell,B.G.,
  14             Egan,S.A., Field,T.R., Maskell,D., Kehoe,M., Dowson,C.G.,
  15             Chanter,N., Whatmore,A.M., Bentley,S.D. and Parkhill,J.
  16   TITLE     Evidence for niche adaptation in the genome of the bovine pathogen
  17             Streptococcus uberis
  18   JOURNAL   BMC Genet. 10 (54) (2009) In press
  19 REFERENCE   2  (bases 1 to 2095)
  20   CONSRTM   NCBI Genome Project
  21   TITLE     Direct Submission
  22   JOURNAL   Submitted (29-JAN-2009) National Center for Biotechnology
  23             Information, NIH, Bethesda, MD 20894, USA
  24 REFERENCE   3  (bases 1 to 2095)
  25   AUTHORS   Holden,M.T.G.
  26   TITLE     Direct Submission
  27   JOURNAL   Submitted (10-MAR-2008) Holden M.T.G., Pathogen Genomics, Sanger
  28             Institute Wellcome Trust, Wellcome Trust Genome Campus, Hinxton,
  29             Cambridge, CB10 1SA, UNITED KINGDOM
  30 COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
  31             NCBI review. The reference sequence was derived from AM946015.
  32             COMPLETENESS: full length.
  33 FEATURES             Location/Qualifiers
  34      source          1..2095
  35                      /organism="Streptococcus uberis 0140J"
  36                      /mol_type="genomic DNA"
  37                      /strain="0140J"
  38                      /db_xref="taxon:218495"
  39      gene            <1..958
  40                      /locus_tag="SUB0865"
  41                      /db_xref="GeneID:7391352"
  42      CDS             <1..958
  43                      /locus_tag="SUB0865"
  44                      /EC_number="1.7.1.7"
  45                      /codon_start=1
  46                      /transl_table=11
  47                      /product="GMP reductase"
  48                      /protein_id="YP_002562194.1"
  49                      /db_xref="GI:222153017"
  50                      /db_xref="GeneID:7391352"
  51                      /translation="MFNDMPVFDYEDIQLIPNKCIINSRSEADTSVQLGKYSFKLPVI
  52                      PANMQTIIDETIAEQLAKDGYFYIMHRFDEESRKPFIKRMHEQNLIASISVGVKEYEY
  53                      DFVTSLKEDAPEFVTIDIAHGHANSVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
  54                      AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
  55                      KSIRFGATMVMIGSLFAGHLESPGKLVEIDGETFKEYYGSASEYQKGEHKNVEGKKIL
  56                      LPTKGHLSDTLTEMKQDLQSSISYAGGNDLAALRRVDYVIVKNSIWNGDSI"
  57      gene            1001..1095
  58                      /locus_tag="SUBs03"
  59                      /db_xref="GeneID:7391353"
  60      misc_RNA        1001..1095
  61                      /locus_tag="SUBs03"
  62                      /note="Purine riboswitch (RF00167) as predicted by Rfam,
  63                      score 59.77"
  64                      /db_xref="GeneID:7391353"
  65      gene            1180..1761
  66                      /gene="xpt"
  67                      /locus_tag="SUB0866"
  68                      /db_xref="GeneID:7392114"
  69      CDS             1180..1761
  70                      /gene="xpt"
  71                      /locus_tag="SUB0866"
  72                      /EC_number="2.4.2.-"
  73                      /codon_start=1
  74                      /transl_table=11
  75                      /product="xanthine phosphoribosyltransferase"
  76                      /protein_id="YP_002562195.1"
  77                      /db_xref="GI:222153018"
  78                      /db_xref="GeneID:7392114"
  79                      /translation="MKLLEERIIKDGNVLGENILKVDSFLTHQVDYHLMRDIGKVFAE
  80                      SYADAGITKVVTIEASGIAPAVYVAEALKVPMIFAKKHKNITMTEGILTAEVYSFTKQ
  81                      VTSTVSIASKFLSKDDKVLIIDDFLANGQAAKGLIEIIQQAGASVEGVGIVIEKSFQD
  82                      GRQLLENMGVKVTSLARIKNFENGRLNFMEADA"
  83      gene            1761..>2095
  84                      /gene="pbuX"
  85                      /locus_tag="SUB0867"
  86                      /db_xref="GeneID:7392109"
  87      CDS             1761..>2095
  88                      /gene="pbuX"
  89                      /locus_tag="SUB0867"
  90                      /codon_start=1
  91                      /transl_table=11
  92                      /product="xanthine permease"
  93                      /protein_id="YP_002562196.1"
  94                      /db_xref="GI:222153019"
  95                      /db_xref="GeneID:7392109"
  96                      /translation="MQTETQHSHSQSAILGLQHLLSMYAGSILVPIMIAGALGYSAKE
  97                      LTYLISTDIFMCGLATFLQLQFNKYFGVGLPVVLGCAFQSVAPLSIIGAKQGSGAMFG
  98                      ALIASGLFVILIAGVFSKIARFFPAIVTGSVITTIGLSLIPVAMGNMGNNTPKPTGQS
  99                      LILAFLTIFIILAIQKFATGFIKSIAILIGLIAGTLVAALMGLVDTSAVSSAPWVHVP
 100                      TPFYFGAPKFEITSIVMMCIIAIVSMVESTGVYLALSDITDETLDSNRLRNGYRAEGL
 101                      AVLLGGIFNTFPYTGFSQNVGLVRLSGIKTRRPIYYTAAFLVVIGLLPKFGALAQMIP
 102                      SPVLGGAMLVLFGMVALQGMQMLNRVDFQGNEHNFIIAAVSISAGVGFNGTNLFASLP
 103                      STANMFLTNGIVIATVTAVLLNLIFNGNTKEN"
 104 ORIGIN
 105         1 ttatgaagat attcaattaa ttcctaataa gtgtatcatt aatagtcgtt ctgaggctga
 106        61 tacaagcgtt caacttggaa aatacagttt taaattacca gtcataccag ctaatatgca
 107       121 aacgatcatt gacgaaacga ttgctgaaca attagctaaa gatggttatt tttatatcat
 108       181 gcatcgattc gatgaagaaa gccgtaagcc atttattaag cgcatgcatg agcaaaactt
 109       241 gattgcttcc atttcagttg gtgtaaagga atatgaatac gattttgtca cttctttaaa
 110       301 agaagatgcc cctgaatttg tgacaattga tatcgcccat ggacacgcca atagtgttat
 111       361 caagatgatt cagcacatca aaaaagaatt accagagaca tttgttatcg ctggcaatgt
 112       421 tgggacacct gaagcagtac gtgaattgga aaatgcagga gcagatgcaa caaaagttgg
 113       481 catcggacct ggtaaagtat gtatcacaaa agttaaaact ggttttggaa caggtggctg
 114       541 gcaattagct gctttacgtt ggtgtgccaa agctgcgcgt aaaccaataa tagcggatgg
 115       601 tggtattcgc actcatggag atattgccaa gtctatccga tttggtgcaa ctatggtcat
 116       661 gattggttcg ctttttgcag gacatcttga aagtcctggt aaactcgttg aaatcgatgg
 117       721 tgaaaccttt aaagaatact atggttcagc atctgagtat caaaagggag aacacaaaaa
 118       781 tgttgaaggt aaaaaaatct tattaccaac aaaaggtcat ctttcggata ccttaacaga
 119       841 aatgaaacaa gatttgcaat cctcaatttc atatgcggga ggaaatgatt tagctgctct
 120       901 tcgtcgcgtc gattacgtta ttgtcaaaaa ttccatctgg aatggtgatt ctatctaaga
 121       961 aggtcttgaa ttttcagaaa ttcgtgatat gatagtcata acaaaaattg aataaactac
 122      1021 ttatttatac tgtgaattgg cgcagtgttt ctacaagaca ccgtaatgtc taacaataag
 123      1081 taagctaaaa agcttgcttg gttttaacct tgcaaagcag gaggagtagt gtcctcttgt
 124      1141 tttgtggcaa gctttttttg tttttagaaa gaggtcatca tgaaattact tgaagaacgt
 125      1201 attataaaag atggtaacgt tctaggcgaa aacattttaa aggttgatag ttttctaaca
 126      1261 caccaagtgg attatcactt gatgcgtgac attggtaaag tttttgctga atcatatgcg
 127      1321 gatgctggta tcacgaaggt tgtgacaatc gaagcatctg gtattgctcc agccgtttat
 128      1381 gtcgcggaag ctttaaaagt ccctatgatc tttgcaaaga aacataaaaa tatcaccatg
 129      1441 accgaaggta ttttaaccgc ggaggtatac tcatttacta aacaggtaac cagcacggtt
 130      1501 tctattgcaa gtaaattttt gagtaaagat gataaagtct taattattga tgacttttta
 131      1561 gctaatggtc aagccgcaaa aggcctaatt gaaattattc aacaagcggg tgccagtgtt
 132      1621 gaaggtgttg gcattgtgat tgaaaagtca tttcaagatg gtcgtcaatt acttgaaaat
 133      1681 atgggagtta aggttacttc tctagcacgt atcaaaaatt ttgaaaatgg aagattaaac
 134      1741 tttatggagg ccgacgcata atgcaaacgg aaacacaaca ttcacattca caatcagcga
 135      1801 ttttaggatt acaacattta ttatcaatgt atgctggttc tattctagtt cccatcatga
 136      1861 ttgctggagc tttaggttac tctgctaaag aattgactta tttgatttca acagatattt
 137      1921 tcatgtgtgg ccttgcaact tttttacaat tgcaatttaa taagtacttt ggagtgggac
 138      1981 tacctgtcgt tcttggttgt gcttttcaat cagtggcacc tctatcaatt attggggcta
 139      2041 aacaaggttc tggtgctatg tttggtgcct tgattgcctc aggtcttttt gtcat
 140 //
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