t/Signalp.t

   1 #!/usr/bin/perl
   2 #-*-Perl-*-
   3 # ## Bioperl Test Harness Script for Modules
   4 # #
   5 use strict;
   6 BEGIN {
   7    use Bio::Root::Test;
   8    test_begin(-tests => 7);
   9    use_ok('Bio::Tools::Run::Signalp');
  10    use_ok('Bio::SeqIO');
  11    use_ok('Bio::Seq');
  12 }
  13
  14 my  $factory = Bio::Tools::Run::Signalp->new();
  15 isa_ok $factory,'Bio::Tools::Run::Signalp';
  16
  17 my $prot_file = test_input_file("signalp_input_protein");
  18
  19 my $seq1 = Bio::Seq->new();
  20 my $seqstream = Bio::SeqIO->new(-file =>$prot_file, -fmt =>'Fasta');
  21 $seq1 = $seqstream->next_seq();
  22
  23 SKIP: {
  24    test_skip(-requires_executable => $factory,
  25           -tests => 3);
  26    my @feat = $factory->predict_protein_features($seq1);
  27
  28    isa_ok $feat[0],'Bio::SeqFeatureI';
  29    is ($feat[0]->start,1);
  30    is ($feat[0]->end,29);
  31 }