t/Seg.t

   1 #!/usr/local/bin/perl
   2 #-*-Perl-*-
   3 # ## Bioperl Test Harness Script for Modules
   4 # #
   5 use strict;
   6 BEGIN {
   7    use Bio::Root::Test;
   8    test_begin(-tests => 8);
   9    use_ok('Bio::Tools::Run::Seg');
  10    use_ok('Bio::SeqIO');
  11    use_ok('Bio::Seq');
  12 }
  13
  14 my  $factory = Bio::Tools::Run::Seg->new();
  15 isa_ok $factory, 'Bio::Tools::Run::Seg';
  16 my $prot_file=  test_input_file('test_prot.FastA');
  17
  18 my $seq1 = Bio::Seq->new();
  19 my $seqstream = Bio::SeqIO->new(-file =>$prot_file, -fmt =>'Fasta');
  20 $seq1 = $seqstream->next_seq();
  21
  22 SKIP: {
  23     test_skip(-requires_executable => $factory,
  24               -tests => 4);
  25
  26    my @feat = $factory->predict_protein_features($seq1);
  27
  28    isa_ok $feat[0],'Bio::SeqFeatureI';
  29    is ($feat[0]->start, 214);
  30    is ($feat[0]->end, 226);
  31    is ($feat[0]->score, 2.26);
  32
  33 }