Build.PL

   1 #!/usr/bin/perl -w
   2
   3 # This is a Module::Build script for BioPerl-Run installation.
   4 # See http://search.cpan.org/~kwilliams/Module-Build/lib/Module/Build.pm
   5
   6 use strict;
   7 use warnings;
   8 use Module::Build;
   9
  10 my $build = Module::Build->new(
  11     dist_name           => 'BioPerl-Run',
  12     dist_version        => '1.006900',
  13     module_name         => 'Bio::Run',
  14     dist_author         => 'BioPerl Team <bioperl-l@bioperl.org>',
  15     dist_abstract       => 'BioPerl-Run - wrapper toolkit',
  16     license             => 'perl',
  17     config_requires     => {
  18                             'Module::Build' => 0,
  19                            },
  20     build_requires      => {
  21                             'Bio::Root::Version' => '1.006900',
  22                             'Bio::Root::Test' => 0,
  23                            },
  24     requires            => {
  25                             'perl'               => '5.6.1',
  26                             'Bio::Root::Version' => '1.006900',
  27                             'Bio::Root::Root'    => 0,
  28                            },
  29     recommends          => {
  30                             'Algorithm::Diff' => 0,     # generating consensus protein family descriptions: Bio::Tools::Run::TribeMCL
  31                             'IPC::Run'        => 0,     # Glimmer and Genemark application wrappers: Bio::Tools::Run::Glimmer Bio::Tools::Run::Genemark
  32                             'IO::String'      => 0,     # generating Bio::Tree::Tree from strings: Bio::Tools::Run::Phylo::Phylip::Consense
  33                             'XML::Twig'       => 0,     # processing XML data: Bio::Tools::Run::EMBOSSacd
  34                             'File::Sort'      => 0,     # BEDTools
  35                             'Config::Any'     => 0,     # MCS, Match
  36                             'SOAP::Lite'      => 0.716, # A bug that affects SoapEU-unit.t tests was fixed in this version (many levels deep object throws error)
  37                            },
  38     get_options         => {
  39                             accept  => { },
  40                             network => { },
  41                             install_scripts => { }
  42                            },
  43     auto_features       => {
  44                             Network => {
  45                                         description => "Enable tests that need an internet connection",
  46                                         requires    => { 'LWP::UserAgent' => 0 }
  47                                        }
  48                            },
  49     dynamic_config      => 1,
  50     #create_makefile_pl  => 'passthrough'
  51 );
  52
  53 my $accept = $build->args->{accept};
  54
  55 # Optionally have script files installed.
  56 if ($build->args('install_scripts') or $accept ? 0 : $build->y_n("Install scripts? y/n", 'n')) {
  57     my $files = $build->_find_file_by_type('PLS', 'scripts');
  58
  59     my $script_build = File::Spec->catdir($build->blib, 'script');
  60
  61     my @tobp;
  62     while (my ($file, $dest) = each %$files) {
  63         $dest = 'bp_'.File::Basename::basename($dest);
  64         $dest =~ s/PLS$/pl/;
  65         $dest = File::Spec->catfile($script_build, $dest);
  66         $build->copy_if_modified(from => $file, to => $dest);
  67         push @tobp, $dest;
  68     }
  69
  70     $build->script_files(\@tobp);
  71 }
  72
  73 # Do network tests?
  74 my $do_network_tests = 0;
  75 if ($build->args('network')) {
  76     $do_network_tests = $build->feature('Network');
  77 }
  78 elsif ($build->feature('Network')) {
  79     $do_network_tests = $accept ? 0 : $build->y_n("Do you want to run tests that require connection to servers across the internet\n(likely to cause some failures)? y/n", 'n');
  80 }
  81
  82 if ($do_network_tests) {
  83     $build->notes(network => 1);
  84     $build->log_info("  - will run internet-requiring tests\n");
  85     my $use_email = $build->y_n("Do you want to run tests requiring a valid email address? y/n",'n');
  86     if ($use_email) {
  87         my $address = $build->prompt("Enter email address:");
  88         $build->notes(email => $address);
  89     }
  90 }
  91 else {
  92     $build->notes(network => 0);
  93     $build->log_info("  - will not run internet-requiring tests\n");
  94 }
  95
  96 # Create the build script and exit
  97 $build->create_build_script;
  98
  99 exit;