.travis.yml

   1 language: perl
   2
   3 perl:
   4   - "5.24"
   5   #- "5.20"
   6   - "5.18"
   7   #- "5.16"
   8   #- "5.14"
   9
  10 sudo: false
  11 env: PERL_CPANM_OPT="--notest --force --skip-satisfied"
  12
  13 addons:
  14   apt:
  15     packages:
  16       - ncbi-blast+
  17       - ncbi-blast+-legacy
  18       - clustalw
  19       - bwa
  20       - hmmer
  21       - probcons
  22       #- emboss
  23       #- wise
  24       #- samtools
  25       #- muscle
  26       #- bedtools
  27       #- mafft
  28
  29 install:
  30     #These are recommended or required Perl libraries
  31     - "cpanm Bio::Perl 2>&1 | tail -n 1"
  32     - "cpanm Bio::FeatureIO 2>&1 | tail -n 1"
  33     - "cpanm IPC::Run XML::Twig 2>&1 | tail -n 1"
  34     - "cpanm Config::Any 2>&1 | tail -n 1"
  35     - "cpanm File::Sort 2>&1 | tail -n 1"
  36     #- "SAMTOOLS=( dirname `which samtools` ) cpanm Bio::DB::Sam 2>&1 | tail -n 1"
  37
  38 # Install non-apt dependencies
  39 before_install:
  40     - bash ./packages/install-samtools.sh
  41     - export PATH=$PATH:$HOME/local/bin/
  42
  43 script:
  44     - "perl ./Build.PL --accept"
  45     - "./Build test"
  46
  47 #after_success:
  48 #    - ./travis_scripts/trigger-dockerhub.sh
  49
  50 #TODO - send emails to bioperl-guts-l
  51 notifications:
  52   email:
  53     recipients:
  54       #- bioperl-guts-l@lists.open-bio.org
  55       - cjfields1@gmail.com
  56     on_success: change
  57     on_failure: change
  58
  59 # whitelist branches
  60 branches:
  61   only:
  62     - master