lib/Bio/Network/IO/psi/intact.pm

   1 #
   2 # BioPerl module for Bio::Network::IO::psi::intact
   3 #
   4 # You may distribute this module under the same terms as perl itself
   5 # POD documentation - main docs before the code
   6
   7 =head1 NAME
   8
   9 Bio::Network::IO::psi::intact - module to handle variations
  10 in PSI MI format from the IntAct database
  11
  12 =head1 SYNOPSIS
  13
  14 Do not use this module directly, use Bio::Network::IO. For example:
  15
  16   my $io = Bio::Network::IO->new(-format => 'psi',
  17                                  -source => 'intact',
  18                                  -file   => 'data.xml');
  19
  20   my $network = $io->next_network;
  21
  22 =head1 DESCRIPTION
  23
  24 There are slight differences between PSI MI files offered by various public
  25 databases. The Bio::Network::IO::psi* modules have methods for handling
  26 these variations. To load a module like this use the optional "-source"
  27 argument when creating a new Bio::Network::IO object.
  28
  29 =head1 FEEDBACK
  30
  31 =head2 Mailing Lists
  32
  33 User feedback is an integral part of the evolution of this and other
  34 Bioperl modules. Send your comments and suggestions preferably to one
  35 of the Bioperl mailing lists. Your participation is much appreciated.
  36
  37   bioperl-l@bioperl.org                  - General discussion
  38   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
  39
  40 =head2 Support
  41
  42 Please direct usage questions or support issues to the mailing list:
  43
  44 I<bioperl-l@bioperl.org>
  45
  46 rather than to the module maintainer directly. Many experienced and
  47 reponsive experts will be able look at the problem and quickly
  48 address it. Please include a thorough description of the problem
  49 with code and data examples if at all possible.
  50
  51 =head2 Reporting Bugs
  52
  53 Report bugs to the Bioperl bug tracking system to help us keep track
  54 the bugs and their resolution.  Bug reports can be submitted via the
  55 web:
  56
  57   http://bugzilla.open-bio.org/
  58
  59 =head1 AUTHORS
  60
  61 Brian Osborne bosborne at alum.mit.edu
  62
  63 =cut
  64
  65 package Bio::Network::IO::psi::intact;
  66 use strict;
  67 use vars qw(@ISA $FAC @EXPORT);
  68 use Bio::Network::IO;
  69 use Bio::Annotation::DBLink;
  70 use Bio::Annotation::Collection;
  71
  72 @EXPORT = qw(&);
  73
  74 #=head2
  75 #
  76 # Name      :
  77 # Purpose   :
  78 # Arguments :
  79 # Returns   :
  80 # Usage     :
  81 #
  82 #=cut
  83
  84 1;
  85
  86 __END__