repo.or.cz
/
bioperl-live.git
/
tree
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
history
|
HEAD
|
snapshot (
tar.gz
zip
)
Sync'ed RichSeqI with the implementation. RichSeq provides backward
[bioperl-live.git]
/
t
/
data
/
tree
eec985ac75ad6f194da23215deef86f9342413af
drwxr-xr-x
..
-rw-r--r--
1002
503384.MEGABLAST.0
blob
|
blame
|
history
|
raw
-rw-r--r--
33771
503384.MEGABLAST.2
blob
|
blame
|
history
|
raw
-rw-r--r--
76371
5X_1895.FASTXY
blob
|
blame
|
history
|
raw
-rw-r--r--
561
AAC12660.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
7473
AB077698.gb
blob
|
blame
|
history
|
raw
-rw-r--r--
8068
AE003528_ecoli.bls
blob
|
blame
|
history
|
raw
-rw-r--r--
3088
AF165282.gb
blob
|
blame
|
history
|
raw
-rw-r--r--
252800
D10483.gbk
blob
|
blame
|
history
|
raw
-rw-r--r--
246524
ECAPAH02.embl
blob
|
blame
|
history
|
raw
-rw-r--r--
1607
GO.defs.test
blob
|
blame
|
history
|
raw
-rw-r--r--
944
GO.defs.test2
blob
|
blame
|
history
|
raw
-rw-r--r--
1117
Genscan.FastA
blob
|
blame
|
history
|
raw
-rw-r--r--
144675
HUMBETGLOA.FASTA
blob
|
blame
|
history
|
raw
-rw-r--r--
3117
HUMBETGLOA.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
380
HUMBETGLOA.gff
blob
|
blame
|
history
|
raw
-rw-r--r--
5000
HUMBETGLOA.grail
blob
|
blame
|
history
|
raw
-rw-r--r--
2080
HUMBETGLOA.grailexp
blob
|
blame
|
history
|
raw
-rw-r--r--
429
HUMBETGLOA.mzef
blob
|
blame
|
history
|
raw
-rw-r--r--
11333
HUMBETGLOA.tblastx
blob
|
blame
|
history
|
raw
-rw-r--r--
2471
L77119.hmmer
blob
|
blame
|
history
|
raw
-rw-r--r--
8086
LL-sample.seq
blob
|
blame
|
history
|
raw
-rw-r--r--
809
LOAD_Ccd1.dnd
blob
|
blame
|
history
|
raw
-rw-r--r--
49285
LittleChrY.dbsnp.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
2063
SwissProt.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
55455
U58726.gb
blob
|
blame
|
history
|
raw
-rw-r--r--
15630
a_thaliana.blastn
blob
|
blame
|
history
|
raw
-rw-r--r--
3670
aaml.mlc
blob
|
blame
|
history
|
raw
-rwxr-xr-x
341980
acefile.ace.1
blob
|
blame
|
history
|
raw
-rwxr-xr-x
67580
acefile.singlets
blob
|
blame
|
history
|
raw
-rw-r--r--
294
alnfile.fasta
blob
|
blame
|
history
|
raw
-rw-r--r--
456
amino.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
7664
ar.embl
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
biodbgff
tree
|
history
drwxr-xr-x
-
biographics
tree
|
history
-rw-r--r--
1487
bl2seq.blastn
blob
|
blame
|
history
|
raw
-rw-r--r--
1270
bl2seq.blastn.rev
blob
|
blame
|
history
|
raw
-rw-r--r--
6327
bl2seq.bug940.out
blob
|
blame
|
history
|
raw
-rw-r--r--
2219
bl2seq.out
blob
|
blame
|
history
|
raw
-rw-r--r--
22211
blast.report
blob
|
blame
|
history
|
raw
-rw-r--r--
80606
chad100.scf
blob
|
blame
|
history
|
raw
-rw-r--r--
13018
codeml.mlc
blob
|
blame
|
history
|
raw
-rw-r--r--
2591
component.ontology.test
blob
|
blame
|
history
|
raw
-rw-r--r--
442
component.ontology.test2
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
consed_project
tree
|
history
-rw-r--r--
5973
cys1_dicdi.water
blob
|
blame
|
history
|
raw
-rwxr-xr-x
2574
cysprot.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
4476
cysprot.msf
blob
|
blame
|
history
|
raw
-rw-r--r--
2183
cysprot.needle
blob
|
blame
|
history
|
raw
-rw-r--r--
23066
cysprot.tblastn
blob
|
blame
|
history
|
raw
-rw-r--r--
2177
cysprot.water
blob
|
blame
|
history
|
raw
-rw-r--r--
13870
cysprot1.FASTA
blob
|
blame
|
history
|
raw
-rw-r--r--
366
cysprot1.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
1121
cysprot1a.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
1931
cysprot1a.msf
blob
|
blame
|
history
|
raw
-rw-r--r--
1451
cysprot1b.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
8627
cysprot1b.hmmsearch
blob
|
blame
|
history
|
raw
-rw-r--r--
2469
cysprot1b.msf
blob
|
blame
|
history
|
raw
-rw-r--r--
91
cysprot1b.newick
blob
|
blame
|
history
|
raw
-rw-r--r--
42909
cysprot_vs_gadfly.FASTA
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
dbfa
tree
|
history
-rw-r--r--
220
dna1.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
581
dna2.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
650
dnaE-bsub-prot.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
2117
dnaE-bsub.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
6127
dnaEbsub_ecoli.wublastx
blob
|
blame
|
history
|
raw
-rw-r--r--
4428
dnaEbsub_ecoli.wutblastn
blob
|
blame
|
history
|
raw
-rw-r--r--
8487
dnaEbsub_ecoli.wutblastx
blob
|
blame
|
history
|
raw
-rw-r--r--
35302
ecoli_domains.rps.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
5840
ecoli_domains.rpsblast
blob
|
blame
|
history
|
raw
-rw-r--r--
11275
ecolitst.bls
blob
|
blame
|
history
|
raw
-rw-r--r--
932
ecolitst.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
13047
ecolitst.wublastp
blob
|
blame
|
history
|
raw
-rw-r--r--
645
empty.bl2seq
blob
|
blame
|
history
|
raw
-rw-r--r--
1802
expected.blast.out
blob
|
blame
|
history
|
raw
-rw-r--r--
21446
factor7.embl
blob
|
blame
|
history
|
raw
-rw-r--r--
14410
footprinter.out
blob
|
blame
|
history
|
raw
-rw-r--r--
6774
genemark.out
blob
|
blame
|
history
|
raw
-rw-r--r--
15953
genewise.out
blob
|
blame
|
history
|
raw
-rw-r--r--
5193
genewise_output.paracel_btk
blob
|
blame
|
history
|
raw
-rw-r--r--
333
genomewise.out
blob
|
blame
|
history
|
raw
-rw-r--r--
546
genomic-seq.epcr
blob
|
blame
|
history
|
raw
-rw-r--r--
171524
genomic-seq.fasta
blob
|
blame
|
history
|
raw
-rw-r--r--
12795
genomic-seq.genscan
blob
|
blame
|
history
|
raw
-rw-r--r--
1772
genomic-seq.mzef
blob
|
blame
|
history
|
raw
-rw-r--r--
2826
gf-s71.needle
blob
|
blame
|
history
|
raw
-rw-r--r--
1391
hemoglobinA.meg
blob
|
blame
|
history
|
raw
-rw-r--r--
1977
hmmpfam.out
blob
|
blame
|
history
|
raw
-rwxr-xr-x
152396
hmmsearch.out
blob
|
blame
|
history
|
raw
-rw-r--r--
970
hs_est.est2genome
blob
|
blame
|
history
|
raw
-rw-r--r--
58
hs_fugu.newick
blob
|
blame
|
history
|
raw
-rw-r--r--
416
hs_owlmonkey.fasta
blob
|
blame
|
history
|
raw
-rw-r--r--
1481
insulin.water
blob
|
blame
|
history
|
raw
-rw-r--r--
33750
interpro_short.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
65
lucy.info
blob
|
blame
|
history
|
raw
-rw-r--r--
2752
lucy.qual
blob
|
blame
|
history
|
raw
-rw-r--r--
1109
lucy.seq
blob
|
blame
|
history
|
raw
-rw-r--r--
64
lucy.stderr
blob
|
blame
|
history
|
raw
-rw-r--r--
8937
lysozyme6.protml
blob
|
blame
|
history
|
raw
-rw-r--r--
296
lysozyme6.simple.protml
blob
|
blame
|
history
|
raw
-rw-r--r--
1490
mapmaker.out
blob
|
blame
|
history
|
raw
-rw-r--r--
4000
megablast_output.paracel_btk
blob
|
blame
|
history
|
raw
-rw-r--r--
911
multi_1.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
911
multi_2.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
107694
multi_blast.bls
blob
|
blame
|
history
|
raw
-rw-r--r--
703
multifa.seq
blob
|
blame
|
history
|
raw
-rw-r--r--
13868
multiseq.bls
blob
|
blame
|
history
|
raw
-rw-r--r--
12924
mutations.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
17209
mutations.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
45164
myco_sites.gff
blob
|
blame
|
history
|
raw
-rw-r--r--
129
neighbor.dist
blob
|
blame
|
history
|
raw
-rwxr-xr-x
467
no-genes.genscan
blob
|
blame
|
history
|
raw
-rw-r--r--
1630
noninterleaved.phy
blob
|
blame
|
history
|
raw
-rw-r--r--
15903
omim_genemap_test
blob
|
blame
|
history
|
raw
-rw-r--r--
3414
omim_text_test
blob
|
blame
|
history
|
raw
-rwxr-xr-x
48762
pdb1bpt.ent
blob
|
blame
|
history
|
raw
-rw-r--r--
14234
phi.out
blob
|
blame
|
history
|
raw
-rw-r--r--
184937
phipsi.out
blob
|
blame
|
history
|
raw
-rwxr-xr-x
7803
phredfile.phd
blob
|
blame
|
history
|
raw
-rw-r--r--
12759
phylipdist-36.out
blob
|
blame
|
history
|
raw
-rw-r--r--
301
phylipdist.out
blob
|
blame
|
history
|
raw
-rw-r--r--
19914
plague_yeast.bls.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
2564
polymorphism.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
3513
polymorphism.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
588
popgen_saureus.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
1299
popgen_saureus.multidat
blob
|
blame
|
history
|
raw
-rwxr-xr-x
2475
primer3_infile.txt
blob
|
blame
|
history
|
raw
-rwxr-xr-x
4873
primer3_outfile.txt
blob
|
blame
|
history
|
raw
-rw-r--r--
775
promoterwise.out
blob
|
blame
|
history
|
raw
-rw-r--r--
21357
protpars.phy
blob
|
blame
|
history
|
raw
-rw-r--r--
347612
psiblastreport.out
blob
|
blame
|
history
|
raw
-rwxr-xr-x
15726
qualfile.qual
blob
|
blame
|
history
|
raw
-rw-r--r--
414
repeatmasker.fa.out
blob
|
blame
|
history
|
raw
-rw-r--r--
92443
revcomp_mrna.gb
blob
|
blame
|
history
|
raw
-rw-r--r--
22984
roa1.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
2512
roa1.genbank
blob
|
blame
|
history
|
raw
-rw-r--r--
6999
roa1.swiss
blob
|
blame
|
history
|
raw
-rw-r--r--
1114
seqfile.pir
blob
|
blame
|
history
|
raw
-rw-r--r--
911
seqs.fas
blob
|
blame
|
history
|
raw
-rw-r--r--
37876
sequencefamily.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
15558
short.blx
blob
|
blame
|
history
|
raw
-rw-r--r--
362
sim4.for.for
blob
|
blame
|
history
|
raw
-rw-r--r--
198
sim4.for.rev
blob
|
blame
|
history
|
raw
-rw-r--r--
423
sim4.rev
blob
|
blame
|
history
|
raw
-rw-r--r--
3978
sofa.ontology
blob
|
blame
|
history
|
raw
-rw-r--r--
1614
sparsealn.needle
blob
|
blame
|
history
|
raw
-rw-r--r--
37766
stress_test_medline.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
15130
stress_test_pubmed.xml
blob
|
blame
|
history
|
raw
-rw-r--r--
37876
swiss.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
2845
swiss_unk.dat
blob
|
blame
|
history
|
raw
-rw-r--r--
1119
swisspfam.data
blob
|
blame
|
history
|
raw
-rw-r--r--
1141
test.ace
blob
|
blame
|
history
|
raw
-rw-r--r--
13576
test.embl
blob
|
blame
|
history
|
raw
-rw-r--r--
806
test.fasta
blob
|
blame
|
history
|
raw
-rw-r--r--
3513
test.game
blob
|
blame
|
history
|
raw
-rw-r--r--
371
test.gcg
blob
|
blame
|
history
|
raw
-rw-r--r--
3801
test.gcgblast
blob
|
blame
|
history
|
raw
-rw-r--r--
15971
test.genbank
blob
|
blame
|
history
|
raw
-rw-r--r--
10044
test.genbank.noseq
blob
|
blame
|
history
|
raw
-rw-r--r--
14118
test.mase
blob
|
blame
|
history
|
raw
-rw-r--r--
107
test.nh
blob
|
blame
|
history
|
raw
-rw-r--r--
408
test.nhx
blob
|
blame
|
history
|
raw
-rwxr-xr-x
4294
test.pfam
blob
|
blame
|
history
|
raw
-rw-r--r--
518
test.raw
blob
|
blame
|
history
|
raw
-rw-r--r--
573
test.txt
blob
|
blame
|
history
|
raw
-rw-r--r--
53875
test.waba
blob
|
blame
|
history
|
raw
-rw-r--r--
381
test_badlf.gcg
blob
|
blame
|
history
|
raw
-rw-r--r--
4620
testaln.fasta
blob
|
blame
|
history
|
raw
-rw-r--r--
1003
testaln.mase
blob
|
blame
|
history
|
raw
-rw-r--r--
7252
testaln.msf
blob
|
blame
|
history
|
raw
-rw-r--r--
555
testaln.nexus
blob
|
blame
|
history
|
raw
-rw-r--r--
4208
testaln.pfam
blob
|
blame
|
history
|
raw
-rw-r--r--
259
testaln.phylip
blob
|
blame
|
history
|
raw
-rw-r--r--
4716
testaln.prodom
blob
|
blame
|
history
|
raw
-rw-r--r--
4580
testaln.selex
blob
|
blame
|
history
|
raw
-rw-r--r--
6675
testaln.stockholm
blob
|
blame
|
history
|
raw
-rw-r--r--
3167
testdat.exonerate
blob
|
blame
|
history
|
raw
-rw-r--r--
14206
testdbaccnums.out
blob
|
blame
|
history
|
raw
-rw-r--r--
3379
testfuzzy.genbank
blob
|
blame
|
history
|
raw
-rw-r--r--
4316
unigene.data
blob
|
blame
|
history
|
raw
-rw-r--r--
126453
version2.scf
blob
|
blame
|
history
|
raw
-rw-r--r--
126454
version3.scf
blob
|
blame
|
history
|
raw
-rw-r--r--
4351
worm_fam_2785.cdna
blob
|
blame
|
history
|
raw
-rw-r--r--
5901
yn00.mlc
blob
|
blame
|
history
|
raw