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bump alpha to test ODBA-related bug fix
2009-09-28
cjfi
e
lds
bu
m
p alpha to test
O
D
B
A
-
related bug fix
commit
|
commitdiff
|
tree
2009-09-28
cjfields
*
m
erge
change
s
from
m
a
in
trunk
commit
|
commitdiff
|
tree
2009-09-25
c
j
fields
bump alpha
commit
|
commitdiff
|
tree
2009-09-25
cjfi
e
l
ds
sync
w
ith main trunk
commit
|
commitdiff
|
tree
2009-09-22
cjfields
s
ync
that last bit
commit
|
commitdiff
|
tree
2009-09-22
cjfield
s
sync with main
t
runk, bum
p
v
e
rsion
t
o alpha 3
commit
|
commitdiff
|
tree
2009-09-22
cjfi
e
lds
merge over t
e
st fixes
m
i
s
s
e
d in prev
i
o
u
s merge (f
o
und
.
.
.
commit
|
commitdiff
|
tree
2009-09-22
cjfields
re
m
ove
from branch
commit
|
commitdiff
|
tree
2009-09-22
cjfi
e
lds
sync with ma
i
n trunk
commit
|
commitdiff
|
tree
2009-09-18
cjfields
syn
c
with
m
ain trunk
commit
|
commitdiff
|
tree
2009-09-18
cjfield
s
sync w/ main
t
runk,
b
um
p
a
l
p
ha
version
commit
|
commitdiff
|
tree
2009-09-17
cjfield
s
s
ync last bits with main trunk
commit
|
commitdiff
|
tree
2009-09-16
cjfields
bump to a
l
pha 1
commit
|
commitdiff
|
tree
2009-09-16
cjfields
syn
c
wit
h
mai
n
trunk
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync with main
t
runk
c
ompletely (a few tests
f
a
iling)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync
w
i
th
t
runk (
t
o r15946
)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync with tr
u
nk to r15684
commit
|
commitdiff
|
tree
2009-04-14
cjfields
sync w/
main t
r
unk
commit
|
commitdiff
|
tree
2009-02-05
cjfie
l
ds
s
y
nc with
m
ain trunk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjfiel
d
s
* revert r15441
f
o
r the t
i
me
bei
n
g
(
SeqFeature
.
t
t
e
s
t
s
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfields
Bum
p
vers
i
on to
1
.
6
f
o
r final re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-21
c
j
fields
s
y
nc
l
ast commit
commit
|
commitdiff
|
tree
2009-01-21
c
j
fields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
delete
Bio::DB
:
:SeqFe
a
ture:
:
Store::DBI::Pg per Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cj
f
ields
sync
w
ith
m
a
i
n trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfield
s
Inc
.
RC ve
r
si
o
n
commit
|
commitdiff
|
tree
2009-01-16
cjfields
c
arry over test fi
x
es from trun
k
commit
|
commitdiff
|
tree
2009-01-16
cjfield
s
Carry over
test
change from ma
i
n
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfiel
d
s
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-13
cjf
i
elds
Syn
c
with
main t
r
un
k
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync
w
ith main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Syn
c
wi
t
h trunk
.
Th
i
s will appear in final re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Resolve
conflict
(can
'
t direct
l
y merge s
i
nce
tru
n
k
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync that
last bit with
trunk
.
I'll have
to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
y
nc with trunk
commit
|
commitdiff
|
tree
2009-01-05
cjfi
e
ld
s
Bump RC to
2
; will tag,
b
ag, and ship tomorrow
a
fter
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync
w
it
h
trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
d
s
s
ync from trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sync last commit
commit
|
commitdiff
|
tree
2009-01-02
c
j
f
i
elds
syn
c
with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
el
d
s
Remove t/Gra
p
h
ics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio::Graphics exam
p
les and sc
r
i
pts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty
d
i
re
c
tory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
Empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empty di
r
ector
y
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
lds
sm
a
ll cl
a
r
i
fication
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Add li
s
t of bugs slated for the
1
.
6
.
x s
e
ries
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updates for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
r
emove Microarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fix for tests JI
C
t
here is a
netwo
r
k
e
rror
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Sync bra
n
ch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove Bi
o
::M
i
croarray from b
r
anch (st
i
ll i
n
developme
n
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
R
e
move (merge
di
d
n't remove this for some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove (m
e
rge d
i
dn't remove this for so
m
e
reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfield
s
sync trunk with branch
commit
|
commitdiff
|
tree
2008-12-20
cj
f
ields
5
.
6
.
1 is min perl versi
o
n
requi
r
ed
f
o
r
all core modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
u
p
d
a
t
e NAM
E
S
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
el
d
s
sma
l
l typo
commit
|
commitdiff
|
tree
2008-12-18
cjf
i
elds
t
ypo
commit
|
commitdiff
|
tree
2008-12-18
cjfi
e
lds
[bug 2714]
commit
|
commitdiff
|
tree
2008-12-17
c
j
field
s
fix test numbe
r
commit
|
commitdiff
|
tree
2008-12-17
cjf
i
elds
upd
a
te T
e
st
:
:Warn (f
i
xes Qua
l
.
t
test problems with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
j
fi
e
lds
m
issed one
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remote tests back onlin
e
(simple te
s
ts
o
n
ly)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EU
t
i
l
i
t
i
es remote tests back onlin
e
(sim
p
le tests on
l
y)
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
You must a
c
tually test da
t
a
if y
o
u
want
t
his modul
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
el
d
s
Don't use pri
n
t
!
Chan
g
ing
t
o $sel
f
->de
b
ug or
c
omme
n
ting out
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
Bio::Gr
a
p
h
d
e
p
re
c
ated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
stifle warni
n
gs when passing string instead of integer
commit
|
commitdiff
|
tree
2008-12-16
c
j
field
s
h
a
sh re
f
, no
t
ar
r
ay ref
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
j
fi
e
ld
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cj
f
iel
d
s
[b
u
g 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
[
b
ug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
[bug
271
2
]
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
scores
commit
|
commitdiff
|
tree
2008-12-15
c
jfields
remaining test
s
for Bio::Tool:
:
EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
mo
r
e
t
e
st data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
c
j
fiel
d
s
i
ni
t
ial b
a
tch of
E
Uti
l
Para
m
eters tests
commit
|
commitdiff
|
tree
2008-12-13
cjfields
e
i
nfo
tests
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some
EUtil
i
ties
t
e
sts (parsing from files)
commit
|
commitdiff
|
tree
2008-12-12
c
j
f
i
elds
some test data
for Bio::Tools:
:
EU
t
ili
t
ies
commit
|
commitdiff
|
tree
2008-12-12
cj
f
i
e
lds
updates to
E
Utilities (getting r
e
ady
fo
r
docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfi
e
lds
Move EUtilParameters to
T
o
o
ls (seem
s
more ap
p
rop
r
iat
e
)
commit
|
commitdiff
|
tree
2008-12-11
c
jfields
fix fo
r
bug when getting cached res
p
onse wi
t
h filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
small pointer
to wiki page (will u
p
da
t
e along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
fiel
d
s
sm
a
ll
update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
updates
commit
|
commitdiff
|
tree
2008-12-11
cjfields
retu
r
n
, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
return, not '
r
eturn u
n
def'
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
elds
[
bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug 2699
]
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing fro
m
HEAD (depr
e
c
ated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
mini pod
f
i
x
commit
|
commitdiff
|
tree
next