sync with main trunkbioperl-1-6-0_002
commit086fcff6fd99ca99c0590e5a6d6702b3e0da4394
authorcjfields <cjfields@bioperl.org>
Tue, 22 Sep 2009 01:26:32 +0000 (22 01:26 -0000)
committercjfields <cjfields@bioperl.org>
Tue, 22 Sep 2009 01:26:32 +0000 (22 01:26 -0000)
treebb165906fe17b1a32ad223a17522929be6e8cd78
parent89fe0dd2959a4cba3bacdaa1296cc3e0c1a385d3
sync with main trunk

svn path=/bioperl-live/branches/branch-1-6/; revision=16147
19 files changed:
Bio/Align/DNAStatistics.pm
Bio/AnalysisI.pm
Bio/Assembly/Tools/ContigSpectrum.pm
Bio/DB/GFF.pm
Bio/DB/GFF/Aggregator.pm
Bio/DB/HIV/HIVQueryHelper.pm
Bio/DB/SeqFeature/Store.pm
Bio/Index/Stockholm.pm
Bio/Root/IO.pm
Bio/Search/HSP/ModelHSP.pm
Bio/SeqIO/chadoxml.pm
Bio/SeqIO/flybase_chadoxml.pm
Bio/Tools/TargetP.pm
Build.PL
maintenance/deprecated.pl
scripts/Bio-DB-EUtilities/einfo.PLS [new file with mode: 0644]
t/LocalDB/SeqFeature_SQLite.t
t/PodSyntax.t
t/SearchIO/gmap_f9.t [moved from t/gmap_f9-searchio.t with 94% similarity]