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bump alpha to test ODBA-related bug fix
2009-09-28
cjfields
bu
m
p alpha to test
O
DBA-
r
e
lated bug
f
ix
commit
|
commitdiff
|
tree
2009-09-28
cjfields
* merge change
s
from main trunk
commit
|
commitdiff
|
tree
2009-09-25
cj
f
ield
s
bump
alpha
commit
|
commitdiff
|
tree
2009-09-25
cjfields
sync wit
h
main tr
u
n
k
commit
|
commitdiff
|
tree
2009-09-22
cjfields
sync that last bit
commit
|
commitdiff
|
tree
2009-09-22
c
jfields
sync with m
a
in trunk, bump versio
n
to alpha
3
commit
|
commitdiff
|
tree
2009-09-22
cjfields
merge over test
fixes missed i
n
previous merge
(
found
.
.
.
commit
|
commitdiff
|
tree
2009-09-22
cjfields
r
e
move from branch
commit
|
commitdiff
|
tree
2009-09-22
cjfield
s
syn
c
with main trunk
commit
|
commitdiff
|
tree
2009-09-18
c
jfield
s
s
y
nc with main trunk
commit
|
commitdiff
|
tree
2009-09-18
cjfields
sy
n
c w/ main tr
u
n
k
,
b
um
p
alph
a
versio
n
commit
|
commitdiff
|
tree
2009-09-17
cjfields
sync last bit
s
w
i
t
h
m
ain trunk
commit
|
commitdiff
|
tree
2009-09-16
cj
f
i
e
lds
bump
t
o alpha
1
commit
|
commitdiff
|
tree
2009-09-16
cjfields
sync wit
h
main tru
n
k
commit
|
commitdiff
|
tree
2009-09-15
cj
f
i
e
ld
s
sync with ma
i
n trunk comp
l
etely (a few tests
failing)
commit
|
commitdiff
|
tree
2009-09-15
cjfield
s
sync with
t
runk (to r15946)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync w
i
th trunk to r15684
commit
|
commitdiff
|
tree
2009-04-14
c
j
f
i
elds
syn
c
w
/ mai
n
tru
n
k
commit
|
commitdiff
|
tree
2009-02-05
cjfields
sync with
m
ai
n
trunk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjfields
* re
v
e
rt
r
15441 for the ti
m
e being (S
e
qF
e
ature
.
t tests
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfields
Bump version
t
o
1
.
6 for
f
inal
r
e
lease
.
commit
|
commitdiff
|
tree
2009-01-21
cjf
i
elds
sync last commit
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
s
ync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjf
i
elds
* delete B
i
o::DB::SeqF
e
ature::Store::DBI::Pg per Sc
o
tt
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sy
n
c with main trunk
commit
|
commitdiff
|
tree
2009-01-16
c
j
f
ie
l
d
s
Inc
.
RC ver
s
i
o
n
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
ld
s
carry over te
s
t fixes from t
r
unk
commit
|
commitdiff
|
tree
2009-01-16
cjfi
e
lds
Carry
over tes
t
ch
a
nge from ma
i
n
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Syn
c
wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-13
c
jf
i
elds
S
ync with main
t
runk
commit
|
commitdiff
|
tree
2009-01-13
c
j
f
i
elds
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sy
n
c
with t
r
unk
.
This
w
i
l
l
appear in final re
l
ease
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Resolve conflict (can't
directly merge
s
in
c
e
t
r
unk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cj
f
ields
Sync that last bit with trunk
.
I
'
ll have
t
o merg
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync with tru
n
k
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump RC to
2; wil
l
tag,
b
ag, and s
h
ip tomorrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
s
y
n
c from trun
k
commit
|
commitdiff
|
tree
2009-01-02
cjfiel
d
s
syn
c
l
a
st com
m
it
commit
|
commitdiff
|
tree
2009-01-02
cj
f
ields
sync with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cj
f
ields
Remove t
/
G
r
a
phics
commit
|
commitdiff
|
tree
2009-01-02
c
jfields
Re
m
ove Bio
:
:Graphics exa
m
ples an
d
s
cript
s
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
elds
empty d
i
rectory
commit
|
commitdiff
|
tree
2008-12-26
cjfi
e
lds
Empty
direc
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfields
e
m
p
ty
di
r
e
ctor
y
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
c
jfi
e
lds
small cl
a
r
i
fication
commit
|
commitdiff
|
tree
2008-12-24
c
jf
i
elds
Add li
s
t of bugs slated for the 1
.
6
.
x
s
eries
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Upda
t
es for
R
C1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove
Microarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fi
x
f
o
r tests
JIC there is a network error
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
e
l
ds
Sy
n
c br
a
n
c
h with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjf
i
elds
Rem
o
ve B
i
o:
:
Mic
r
oarray from branch (still in development
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Re
m
o
v
e (merge didn't remove this for
s
ome reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Rem
o
ve (merge didn'
t
rem
o
ve
t
h
i
s
f
o
r
s
ome reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfie
l
ds
sync tr
u
n
k wi
t
h br
a
nch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1 is
m
in perl version req
u
ire
d
for all core modules now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update
NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfiel
d
s
sm
a
ll typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfie
l
ds
[bug 2714
]
commit
|
commitdiff
|
tree
2008-12-17
c
j
fields
fix tes
t
numb
e
r
commit
|
commitdiff
|
tree
2008-12-17
cjfields
up
d
ate
T
est::Warn (fixes Qual
.
t t
e
st prob
l
e
m
s
w
ith
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
jfiel
d
s
m
i
ss
e
d
on
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilit
i
es remote
tests bac
k
online (simple t
e
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
EUtil
i
ties remote tests back
o
nl
i
n
e
(s
i
mple t
e
sts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
d
s
You must a
c
tu
a
lly test data if you w
a
nt
t
his mod
u
le
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
Don't u
s
e print! Changing to $s
e
lf->de
b
ug or commen
t
ing out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
B
i
o
::Gra
p
h deprecated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
d
s
stifle warnings
when
p
as
s
ing
s
tring instead
o
f intege
r
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
ha
s
h ref,
n
ot array ref
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
[bug 26
3
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
6
3
7
]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
[bug
2
7
12]
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
scor
e
s
commit
|
commitdiff
|
tree
2008-12-15
cjfields
remaining
t
ests for B
i
o::Too
l
::EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
more test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfi
e
lds
initial b
a
tch of EUtilParameters tests
commit
|
commitdiff
|
tree
2008-12-13
c
jfields
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cj
f
ie
l
ds
s
o
me EUti
l
ities
tests
(parsing fr
o
m fil
e
s)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some tes
t
data f
o
r Bio::T
o
ols::EUtilitie
s
commit
|
commitdiff
|
tree
2008-12-12
cjfields
updates
to EUt
i
lities (getti
n
g read
y
for docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
j
f
i
elds
Move
EUt
i
lParameters to Tool
s
(seems more appro
p
riate)
commit
|
commitdiff
|
tree
2008-12-11
c
j
fiel
d
s
f
i
x for
bug when ge
t
ting cached
response
w
ith filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
e
lds
sm
a
ll
p
ointer to wiki pag
e
(will upd
a
te alon
g
wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
small upda
t
e
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
updates
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
ld
s
ret
u
rn, not 'retur
n
undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
re
t
u
r
n, not 'retur
n
un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfi
e
lds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
e
lds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Remo
v
ing
fro
m
HEAD (d
e
p
r
e
cated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
m
i
ni po
d
fix
commit
|
commitdiff
|
tree
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