This commit was manufactured by cvs2svn to create tagontology-overhaul-end
commite437d589e067e8b35020def07d99dfe00b5f4f18
authornobody <nobody@localhost>
Mon, 10 Mar 2003 21:53:57 +0000 (10 21:53 -0000)
committernobody <nobody@localhost>
Mon, 10 Mar 2003 21:53:57 +0000 (10 21:53 -0000)
tree3d5c9b1f88880431a3c445c53408d28a203ef9e7
parent06b5d0db4c62821db55b45e193308ddaad8c1232
This commit was manufactured by cvs2svn to create tag
'ontology-overhaul-end'.

svn path=/bioperl-live/tags/ontology-overhaul-end/; revision=5737
938 files changed:
AUTHORS [deleted file]
BUGS [deleted file]
Bio/Align/AlignI.pm [deleted file]
Bio/Align/DNAStatistics.pm [deleted file]
Bio/Align/PairwiseStatistics.pm [deleted file]
Bio/Align/StatisticsI.pm [deleted file]
Bio/Align/Utilities.pm [deleted file]
Bio/AlignIO.pm [deleted file]
Bio/AlignIO/bl2seq.pm [deleted file]
Bio/AlignIO/clustalw.pm [deleted file]
Bio/AlignIO/emboss.pm [deleted file]
Bio/AlignIO/fasta.pm [deleted file]
Bio/AlignIO/mase.pm [deleted file]
Bio/AlignIO/mega.pm [deleted file]
Bio/AlignIO/meme.pm [deleted file]
Bio/AlignIO/msf.pm [deleted file]
Bio/AlignIO/nexus.pm [deleted file]
Bio/AlignIO/pfam.pm [deleted file]
Bio/AlignIO/phylip.pm [deleted file]
Bio/AlignIO/prodom.pm [deleted file]
Bio/AlignIO/psi.pm [deleted file]
Bio/AlignIO/selex.pm [deleted file]
Bio/AlignIO/stockholm.pm [deleted file]
Bio/AnalysisI.pm [deleted file]
Bio/AnalysisParserI.pm [deleted file]
Bio/AnalysisResultI.pm [deleted file]
Bio/AnnotatableI.pm [deleted file]
Bio/Annotation/AnnotationFactory.pm [deleted file]
Bio/Annotation/Collection.pm [deleted file]
Bio/Annotation/Comment.pm [deleted file]
Bio/Annotation/DBLink.pm [deleted file]
Bio/Annotation/Reference.pm [deleted file]
Bio/Annotation/SimpleValue.pm [deleted file]
Bio/Annotation/StructuredValue.pm [deleted file]
Bio/Annotation/TypeManager.pm [deleted file]
Bio/AnnotationCollectionI.pm [deleted file]
Bio/AnnotationI.pm [deleted file]
Bio/Assembly/Contig.pm [deleted file]
Bio/Assembly/ContigAnalysis.pm [deleted file]
Bio/Assembly/IO.pm [deleted file]
Bio/Assembly/IO/ace.pm [deleted file]
Bio/Assembly/IO/phrap.pm [deleted file]
Bio/Assembly/Scaffold.pm [deleted file]
Bio/Assembly/ScaffoldI.pm [deleted file]
Bio/Biblio.pm [deleted file]
Bio/Biblio/Article.pm [deleted file]
Bio/Biblio/BiblioBase.pm [deleted file]
Bio/Biblio/Book.pm [deleted file]
Bio/Biblio/BookArticle.pm [deleted file]
Bio/Biblio/IO.pm [deleted file]
Bio/Biblio/IO/medline2ref.pm [deleted file]
Bio/Biblio/IO/medlinexml.pm [deleted file]
Bio/Biblio/IO/pubmed2ref.pm [deleted file]
Bio/Biblio/IO/pubmedxml.pm [deleted file]
Bio/Biblio/Journal.pm [deleted file]
Bio/Biblio/JournalArticle.pm [deleted file]
Bio/Biblio/MedlineArticle.pm [deleted file]
Bio/Biblio/MedlineBook.pm [deleted file]
Bio/Biblio/MedlineBookArticle.pm [deleted file]
Bio/Biblio/MedlineJournal.pm [deleted file]
Bio/Biblio/MedlineJournalArticle.pm [deleted file]
Bio/Biblio/Organisation.pm [deleted file]
Bio/Biblio/Patent.pm [deleted file]
Bio/Biblio/Person.pm [deleted file]
Bio/Biblio/Proceeding.pm [deleted file]
Bio/Biblio/Provider.pm [deleted file]
Bio/Biblio/PubmedArticle.pm [deleted file]
Bio/Biblio/PubmedBookArticle.pm [deleted file]
Bio/Biblio/PubmedJournalArticle.pm [deleted file]
Bio/Biblio/Ref.pm [deleted file]
Bio/Biblio/Service.pm [deleted file]
Bio/Biblio/TechReport.pm [deleted file]
Bio/Biblio/Thesis.pm [deleted file]
Bio/Biblio/WebResource.pm [deleted file]
Bio/Cluster/ClusterFactory.pm [deleted file]
Bio/Cluster/FamilyI.pm [deleted file]
Bio/Cluster/SequenceFamily.pm [deleted file]
Bio/Cluster/UniGene.pm [deleted file]
Bio/Cluster/UniGeneI.pm [deleted file]
Bio/ClusterI.pm [deleted file]
Bio/ClusterIO.pm [deleted file]
Bio/ClusterIO/dbsnp.pm [deleted file]
Bio/ClusterIO/unigene.pm [deleted file]
Bio/Coordinate/Chain.pm [deleted file]
Bio/Coordinate/Collection.pm [deleted file]
Bio/Coordinate/ExtrapolatingPair.pm [deleted file]
Bio/Coordinate/GeneMapper.pm [deleted file]
Bio/Coordinate/Graph.pm [deleted file]
Bio/Coordinate/MapperI.pm [deleted file]
Bio/Coordinate/Pair.pm [deleted file]
Bio/Coordinate/Result.pm [deleted file]
Bio/Coordinate/Result/Gap.pm [deleted file]
Bio/Coordinate/Result/Match.pm [deleted file]
Bio/Coordinate/ResultI.pm [deleted file]
Bio/Coordinate/Utils.pm [deleted file]
Bio/DB/Ace.pm [deleted file]
Bio/DB/Biblio/biofetch.pm [deleted file]
Bio/DB/Biblio/soap.pm [deleted file]
Bio/DB/BiblioI.pm [deleted file]
Bio/DB/BioFetch.pm [deleted file]
Bio/DB/DBFetch.pm [deleted file]
Bio/DB/EMBL.pm [deleted file]
Bio/DB/Failover.pm [deleted file]
Bio/DB/Fasta.pm [deleted file]
Bio/DB/FileCache.pm [deleted file]
Bio/DB/Flat.pm [deleted file]
Bio/DB/Flat/BDB.pm [deleted file]
Bio/DB/Flat/BDB/embl.pm [deleted file]
Bio/DB/Flat/BDB/fasta.pm [deleted file]
Bio/DB/Flat/BDB/genbank.pm [deleted file]
Bio/DB/Flat/BDB/swiss.pm [deleted file]
Bio/DB/Flat/BDB/swissprot.pm [deleted file]
Bio/DB/Flat/BinarySearch.pm [deleted file]
Bio/DB/GDB.pm [deleted file]
Bio/DB/GFF.pm [deleted file]
Bio/DB/GFF/Adaptor/ace.pm [deleted file]
Bio/DB/GFF/Adaptor/biofetch.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/caching_handle.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/iterator.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/mysql.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/mysqlace.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/oracle.pm [deleted file]
Bio/DB/GFF/Adaptor/dbi/oracleace.pm [deleted file]
Bio/DB/GFF/Adaptor/memory.pm [deleted file]
Bio/DB/GFF/Adaptor/memory_iterator.pm [deleted file]
Bio/DB/GFF/Aggregator.pm [deleted file]
Bio/DB/GFF/Aggregator/alignment.pm [deleted file]
Bio/DB/GFF/Aggregator/clone.pm [deleted file]
Bio/DB/GFF/Aggregator/none.pm [deleted file]
Bio/DB/GFF/Aggregator/transcript.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_acembly.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_ensgene.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_genscan.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_refgene.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_sanger22.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_softberry.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_twinscan.pm [deleted file]
Bio/DB/GFF/Aggregator/ucsc_unigene.pm [deleted file]
Bio/DB/GFF/Featname.pm [deleted file]
Bio/DB/GFF/Feature.pm [deleted file]
Bio/DB/GFF/Homol.pm [deleted file]
Bio/DB/GFF/RelSegment.pm [deleted file]
Bio/DB/GFF/Segment.pm [deleted file]
Bio/DB/GFF/Typename.pm [deleted file]
Bio/DB/GFF/Util/Binning.pm [deleted file]
Bio/DB/GFF/Util/Rearrange.pm [deleted file]
Bio/DB/GenBank.pm [deleted file]
Bio/DB/GenPept.pm [deleted file]
Bio/DB/InMemoryCache.pm [deleted file]
Bio/DB/MANIFEST [deleted file]
Bio/DB/Makefile.PL [deleted file]
Bio/DB/NCBIHelper.pm [deleted file]
Bio/DB/Query/GenBank.pm [deleted file]
Bio/DB/Query/WebQuery.pm [deleted file]
Bio/DB/QueryI.pm [deleted file]
Bio/DB/RandomAccessI.pm [deleted file]
Bio/DB/RefSeq.pm [deleted file]
Bio/DB/Registry.pm [deleted file]
Bio/DB/SeqI.pm [deleted file]
Bio/DB/SwissProt.pm [deleted file]
Bio/DB/Taxonomy.pm [deleted file]
Bio/DB/Taxonomy/entrez.pm [deleted file]
Bio/DB/Universal.pm [deleted file]
Bio/DB/UpdateableSeqI.pm [deleted file]
Bio/DB/WebDBSeqI.pm [deleted file]
Bio/DB/XEMBL.pm [deleted file]
Bio/DB/XEMBLService.pm [deleted file]
Bio/DBLinkContainerI.pm [deleted file]
Bio/Das/FeatureTypeI.pm [deleted file]
Bio/Das/SegmentI.pm [deleted file]
Bio/DasI.pm [deleted file]
Bio/DescribableI.pm [deleted file]
Bio/Event/EventGeneratorI.pm [deleted file]
Bio/Event/EventHandlerI.pm [deleted file]
Bio/Expression/FeatureI.pm [deleted file]
Bio/Expression/FeatureSet.pm [deleted file]
Bio/Expression/ProbeI.pm [deleted file]
Bio/Factory/AnalysisI.pm [deleted file]
Bio/Factory/ApplicationFactoryI.pm [deleted file]
Bio/Factory/BlastHitFactory.pm [deleted file]
Bio/Factory/BlastResultFactory.pm [deleted file]
Bio/Factory/DriverFactory.pm [deleted file]
Bio/Factory/EMBOSS.pm [deleted file]
Bio/Factory/FTLocationFactory.pm [deleted file]
Bio/Factory/HitFactoryI.pm [deleted file]
Bio/Factory/LocationFactoryI.pm [deleted file]
Bio/Factory/MapFactoryI.pm [deleted file]
Bio/Factory/ObjectBuilderI.pm [deleted file]
Bio/Factory/ObjectFactoryI.pm [deleted file]
Bio/Factory/ResultFactoryI.pm [deleted file]
Bio/Factory/SeqAnalysisParserFactory.pm [deleted file]
Bio/Factory/SeqAnalysisParserFactoryI.pm [deleted file]
Bio/Factory/SequenceFactoryI.pm [deleted file]
Bio/Factory/SequenceProcessorI.pm [deleted file]
Bio/Factory/SequenceStreamI.pm [deleted file]
Bio/Factory/TreeFactoryI.pm [deleted file]
Bio/FeatureHolderI.pm [deleted file]
Bio/Graphics.pm [deleted file]
Bio/Graphics/ConfiguratorI.pm [deleted file]
Bio/Graphics/Feature.pm [deleted file]
Bio/Graphics/FeatureFile.pm [deleted file]
Bio/Graphics/Glyph.pm [deleted file]
Bio/Graphics/Glyph/Factory.pm [deleted file]
Bio/Graphics/Glyph/alignment.pm [deleted file]
Bio/Graphics/Glyph/anchored_arrow.pm [deleted file]
Bio/Graphics/Glyph/arrow.pm [deleted file]
Bio/Graphics/Glyph/box.pm [deleted file]
Bio/Graphics/Glyph/cds.pm [deleted file]
Bio/Graphics/Glyph/crossbox.pm [deleted file]
Bio/Graphics/Glyph/diamond.pm [deleted file]
Bio/Graphics/Glyph/dna.pm [deleted file]
Bio/Graphics/Glyph/dot.pm [deleted file]
Bio/Graphics/Glyph/ellipse.pm [deleted file]
Bio/Graphics/Glyph/ex.pm [deleted file]
Bio/Graphics/Glyph/extending_arrow.pm [deleted file]
Bio/Graphics/Glyph/generic.pm [deleted file]
Bio/Graphics/Glyph/graded_segments.pm [deleted file]
Bio/Graphics/Glyph/group.pm [deleted file]
Bio/Graphics/Glyph/heterogeneous_segments.pm [deleted file]
Bio/Graphics/Glyph/line.pm [deleted file]
Bio/Graphics/Glyph/oval.pm [deleted file]
Bio/Graphics/Glyph/pinsertion.pm [deleted file]
Bio/Graphics/Glyph/primers.pm [deleted file]
Bio/Graphics/Glyph/redgreen_box.pm [deleted file]
Bio/Graphics/Glyph/rndrect.pm [deleted file]
Bio/Graphics/Glyph/ruler_arrow.pm [deleted file]
Bio/Graphics/Glyph/segmented_keyglyph.pm [deleted file]
Bio/Graphics/Glyph/segments.pm [deleted file]
Bio/Graphics/Glyph/span.pm [deleted file]
Bio/Graphics/Glyph/toomany.pm [deleted file]
Bio/Graphics/Glyph/track.pm [deleted file]
Bio/Graphics/Glyph/transcript.pm [deleted file]
Bio/Graphics/Glyph/transcript2.pm [deleted file]
Bio/Graphics/Glyph/translation.pm [deleted file]
Bio/Graphics/Glyph/triangle.pm [deleted file]
Bio/Graphics/Glyph/xyplot.pm [deleted file]
Bio/Graphics/Panel.pm [deleted file]
Bio/Graphics/RendererI.pm [deleted file]
Bio/Graphics/Util.pm [deleted file]
Bio/IdCollectionI.pm [deleted file]
Bio/IdentifiableI.pm [deleted file]
Bio/Index/Abstract.pm [deleted file]
Bio/Index/AbstractSeq.pm [deleted file]
Bio/Index/Blast.pm [deleted file]
Bio/Index/EMBL.pm [deleted file]
Bio/Index/Fasta.pm [deleted file]
Bio/Index/Fastq.pm [deleted file]
Bio/Index/GenBank.pm [deleted file]
Bio/Index/SwissPfam.pm [deleted file]
Bio/Index/Swissprot.pm [deleted file]
Bio/LiveSeq/AARange.pm [deleted file]
Bio/LiveSeq/Chain.pm [deleted file]
Bio/LiveSeq/ChainI.pm [deleted file]
Bio/LiveSeq/DNA.pm [deleted file]
Bio/LiveSeq/Exon.pm [deleted file]
Bio/LiveSeq/Gene.pm [deleted file]
Bio/LiveSeq/IO/BioPerl.pm [deleted file]
Bio/LiveSeq/IO/Loader.pm [deleted file]
Bio/LiveSeq/IO/README [deleted file]
Bio/LiveSeq/IO/SRS.pm [deleted file]
Bio/LiveSeq/Intron.pm [deleted file]
Bio/LiveSeq/Mutation.pm [deleted file]
Bio/LiveSeq/Mutator.pm [deleted file]
Bio/LiveSeq/Prim_Transcript.pm [deleted file]
Bio/LiveSeq/Range.pm [deleted file]
Bio/LiveSeq/Repeat_Region.pm [deleted file]
Bio/LiveSeq/Repeat_Unit.pm [deleted file]
Bio/LiveSeq/SeqI.pm [deleted file]
Bio/LiveSeq/Transcript.pm [deleted file]
Bio/LiveSeq/Translation.pm [deleted file]
Bio/LocatableSeq.pm [deleted file]
Bio/Location/Atomic.pm [deleted file]
Bio/Location/AvWithinCoordPolicy.pm [deleted file]
Bio/Location/CoordinatePolicyI.pm [deleted file]
Bio/Location/Fuzzy.pm [deleted file]
Bio/Location/FuzzyLocationI.pm [deleted file]
Bio/Location/NarrowestCoordPolicy.pm [deleted file]
Bio/Location/Simple.pm [deleted file]
Bio/Location/Split.pm [deleted file]
Bio/Location/SplitLocationI.pm [deleted file]
Bio/Location/WidestCoordPolicy.pm [deleted file]
Bio/LocationI.pm [deleted file]
Bio/Map/CytoMap.pm [deleted file]
Bio/Map/CytoMarker.pm [deleted file]
Bio/Map/CytoPosition.pm [deleted file]
Bio/Map/LinkageMap.pm [deleted file]
Bio/Map/LinkagePosition.pm [deleted file]
Bio/Map/MapI.pm [deleted file]
Bio/Map/MappableI.pm [deleted file]
Bio/Map/Marker.pm [deleted file]
Bio/Map/MarkerI.pm [deleted file]
Bio/Map/Microsatellite.pm [deleted file]
Bio/Map/OrderedPosition.pm [deleted file]
Bio/Map/OrderedPositionWithDistance.pm [deleted file]
Bio/Map/Position.pm [deleted file]
Bio/Map/PositionI.pm [deleted file]
Bio/Map/SimpleMap.pm [deleted file]
Bio/MapIO.pm [deleted file]
Bio/MapIO/mapmaker.pm [deleted file]
Bio/Matrix/PhylipDist.pm [deleted file]
Bio/Perl.pm [deleted file]
Bio/Phenotype/Correlate.pm [deleted file]
Bio/Phenotype/Measure.pm [deleted file]
Bio/Phenotype/OMIM/MiniMIMentry.pm [deleted file]
Bio/Phenotype/OMIM/OMIMentry.pm [deleted file]
Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm [deleted file]
Bio/Phenotype/OMIM/OMIMparser.pm [deleted file]
Bio/Phenotype/Phenotype.pm [deleted file]
Bio/Phenotype/PhenotypeI.pm [deleted file]
Bio/PopGen/Genotype.pm [deleted file]
Bio/PopGen/GenotypeI.pm [deleted file]
Bio/PopGen/IO.pm [deleted file]
Bio/PopGen/IO/csv.pm [deleted file]
Bio/PopGen/Individual.pm [deleted file]
Bio/PopGen/IndividualI.pm [deleted file]
Bio/PopGen/Marker.pm [deleted file]
Bio/PopGen/MarkerI.pm [deleted file]
Bio/PopGen/PopStats.pm [deleted file]
Bio/PopGen/Population.pm [deleted file]
Bio/PopGen/PopulationI.pm [deleted file]
Bio/PrimarySeq.pm [deleted file]
Bio/PrimarySeqI.pm [deleted file]
Bio/Range.pm [deleted file]
Bio/RangeI.pm [deleted file]
Bio/Root/Err.pm [deleted file]
Bio/Root/Exception.pm [deleted file]
Bio/Root/Global.pm [deleted file]
Bio/Root/HTTPget.pm [deleted file]
Bio/Root/IO.pm [deleted file]
Bio/Root/IOManager.pm [deleted file]
Bio/Root/Object.pm [deleted file]
Bio/Root/Root.pm [deleted file]
Bio/Root/RootI.pm [deleted file]
Bio/Root/Utilities.pm [deleted file]
Bio/Root/Vector.pm [deleted file]
Bio/Root/Version.pm [deleted file]
Bio/Root/Xref.pm [deleted file]
Bio/Search/BlastUtils.pm [deleted file]
Bio/Search/DatabaseI.pm [deleted file]
Bio/Search/GenericDatabase.pm [deleted file]
Bio/Search/HSP/BlastHSP.pm [deleted file]
Bio/Search/HSP/FastaHSP.pm [deleted file]
Bio/Search/HSP/GenericHSP.pm [deleted file]
Bio/Search/HSP/HMMERHSP.pm [deleted file]
Bio/Search/HSP/HSPFactory.pm [deleted file]
Bio/Search/HSP/HSPI.pm [deleted file]
Bio/Search/HSP/WABAHSP.pm [deleted file]
Bio/Search/Hit/BlastHit.pm [deleted file]
Bio/Search/Hit/Fasta.pm [deleted file]
Bio/Search/Hit/GenericHit.pm [deleted file]
Bio/Search/Hit/HMMERHit.pm [deleted file]
Bio/Search/Hit/HitFactory.pm [deleted file]
Bio/Search/Hit/HitI.pm [deleted file]
Bio/Search/Processor.pm [deleted file]
Bio/Search/Result/BlastResult.pm [deleted file]
Bio/Search/Result/GenericResult.pm [deleted file]
Bio/Search/Result/HMMERResult.pm [deleted file]
Bio/Search/Result/ResultFactory.pm [deleted file]
Bio/Search/Result/ResultI.pm [deleted file]
Bio/Search/Result/WABAResult.pm [deleted file]
Bio/Search/SearchUtils.pm [deleted file]
Bio/SearchDist.pm [deleted file]
Bio/SearchIO.pm [deleted file]
Bio/SearchIO/EventHandlerI.pm [deleted file]
Bio/SearchIO/FastHitEventBuilder.pm [deleted file]
Bio/SearchIO/SearchResultEventBuilder.pm [deleted file]
Bio/SearchIO/SearchWriterI.pm [deleted file]
Bio/SearchIO/Writer/HSPTableWriter.pm [deleted file]
Bio/SearchIO/Writer/HTMLResultWriter.pm [deleted file]
Bio/SearchIO/Writer/HitTableWriter.pm [deleted file]
Bio/SearchIO/Writer/ResultTableWriter.pm [deleted file]
Bio/SearchIO/Writer/TextResultWriter.pm [deleted file]
Bio/SearchIO/blast.pm [deleted file]
Bio/SearchIO/blastxml.pm [deleted file]
Bio/SearchIO/chado.pm [deleted file]
Bio/SearchIO/chadosxpr.pm [deleted file]
Bio/SearchIO/exonerate.pm [deleted file]
Bio/SearchIO/fasta.pm [deleted file]
Bio/SearchIO/hmmer.pm [deleted file]
Bio/SearchIO/megablast.pm [deleted file]
Bio/SearchIO/psiblast.pm [deleted file]
Bio/SearchIO/waba.pm [deleted file]
Bio/Seq.pm [deleted file]
Bio/Seq/BaseSeqProcessor.pm [deleted file]
Bio/Seq/EncodedSeq.pm [deleted file]
Bio/Seq/LargePrimarySeq.pm [deleted file]
Bio/Seq/LargeSeq.pm [deleted file]
Bio/Seq/PrimaryQual.pm [deleted file]
Bio/Seq/PrimedSeq.pm [deleted file]
Bio/Seq/QualI.pm [deleted file]
Bio/Seq/RichSeq.pm [deleted file]
Bio/Seq/RichSeqI.pm [deleted file]
Bio/Seq/SeqBuilder.pm [deleted file]
Bio/Seq/SeqFactory.pm [deleted file]
Bio/Seq/SeqFastaSpeedFactory.pm [deleted file]
Bio/Seq/SeqWithQuality.pm [deleted file]
Bio/Seq/SequenceTrace.pm [deleted file]
Bio/Seq/TraceI.pm [deleted file]
Bio/SeqAnalysisParserI.pm [deleted file]
Bio/SeqFeature/AnnotationAdaptor.pm [deleted file]
Bio/SeqFeature/Collection.pm [deleted file]
Bio/SeqFeature/CollectionI.pm [deleted file]
Bio/SeqFeature/Computation.pm [deleted file]
Bio/SeqFeature/FeaturePair.pm [deleted file]
Bio/SeqFeature/Gene/Exon.pm [deleted file]
Bio/SeqFeature/Gene/ExonI.pm [deleted file]
Bio/SeqFeature/Gene/GeneStructure.pm [deleted file]
Bio/SeqFeature/Gene/GeneStructureI.pm [deleted file]
Bio/SeqFeature/Gene/Intron.pm [deleted file]
Bio/SeqFeature/Gene/NC_Feature.pm [deleted file]
Bio/SeqFeature/Gene/Poly_A_site.pm [deleted file]
Bio/SeqFeature/Gene/Promoter.pm [deleted file]
Bio/SeqFeature/Gene/Transcript.pm [deleted file]
Bio/SeqFeature/Gene/TranscriptI.pm [deleted file]
Bio/SeqFeature/Gene/UTR.pm [deleted file]
Bio/SeqFeature/Generic.pm [deleted file]
Bio/SeqFeature/PositionProxy.pm [deleted file]
Bio/SeqFeature/Primer.pm [deleted file]
Bio/SeqFeature/Similarity.pm [deleted file]
Bio/SeqFeature/SimilarityPair.pm [deleted file]
Bio/SeqFeatureI.pm [deleted file]
Bio/SeqI.pm [deleted file]
Bio/SeqIO.pm [deleted file]
Bio/SeqIO/FTHelper.pm [deleted file]
Bio/SeqIO/MultiFile.pm [deleted file]
Bio/SeqIO/abi.pm [deleted file]
Bio/SeqIO/ace.pm [deleted file]
Bio/SeqIO/alf.pm [deleted file]
Bio/SeqIO/bsml.pm [deleted file]
Bio/SeqIO/chado.pm [deleted file]
Bio/SeqIO/chadoitext.pm [deleted file]
Bio/SeqIO/chadosxpr.pm [deleted file]
Bio/SeqIO/chadoxml.pm [deleted file]
Bio/SeqIO/ctf.pm [deleted file]
Bio/SeqIO/embl.pm [deleted file]
Bio/SeqIO/exp.pm [deleted file]
Bio/SeqIO/fasta.pm [deleted file]
Bio/SeqIO/fastq.pm [deleted file]
Bio/SeqIO/game.pm [deleted file]
Bio/SeqIO/game/featureHandler.pm [deleted file]
Bio/SeqIO/game/idHandler.pm [deleted file]
Bio/SeqIO/game/seqHandler.pm [deleted file]
Bio/SeqIO/gcg.pm [deleted file]
Bio/SeqIO/genbank.pm [deleted file]
Bio/SeqIO/largefasta.pm [deleted file]
Bio/SeqIO/locuslink.pm [deleted file]
Bio/SeqIO/phd.pm [deleted file]
Bio/SeqIO/pir.pm [deleted file]
Bio/SeqIO/pln.pm [deleted file]
Bio/SeqIO/qual.pm [deleted file]
Bio/SeqIO/raw.pm [deleted file]
Bio/SeqIO/scf.pm [deleted file]
Bio/SeqIO/swiss.pm [deleted file]
Bio/SeqIO/ztr.pm [deleted file]
Bio/SeqUtils.pm [deleted file]
Bio/SimpleAlign.pm [deleted file]
Bio/Species.pm [deleted file]
Bio/Structure/Atom.pm [deleted file]
Bio/Structure/Chain.pm [deleted file]
Bio/Structure/Entry.pm [deleted file]
Bio/Structure/IO.pm [deleted file]
Bio/Structure/IO/pdb.pm [deleted file]
Bio/Structure/Model.pm [deleted file]
Bio/Structure/Residue.pm [deleted file]
Bio/Structure/SecStr/DSSP/Res.pm [deleted file]
Bio/Structure/SecStr/STRIDE/Res.pm [deleted file]
Bio/Structure/StructureI.pm [deleted file]
Bio/Symbol/Alphabet.pm [deleted file]
Bio/Symbol/AlphabetI.pm [deleted file]
Bio/Symbol/DNAAlphabet.pm [deleted file]
Bio/Symbol/ProteinAlphabet.pm [deleted file]
Bio/Symbol/Symbol.pm [deleted file]
Bio/Symbol/SymbolI.pm [deleted file]
Bio/Taxonomy.pm [deleted file]
Bio/Taxonomy/Taxon.pm [deleted file]
Bio/Taxonomy/Tree.pm [deleted file]
Bio/Tools/AlignFactory.pm [deleted file]
Bio/Tools/Alignment/Consed.pm [deleted file]
Bio/Tools/Alignment/Trim.pm [deleted file]
Bio/Tools/AnalysisResult.pm [deleted file]
Bio/Tools/BPbl2seq.pm [deleted file]
Bio/Tools/BPlite.pm [deleted file]
Bio/Tools/BPlite/HSP.pm [deleted file]
Bio/Tools/BPlite/Iteration.pm [deleted file]
Bio/Tools/BPlite/Sbjct.pm [deleted file]
Bio/Tools/BPpsilite.pm [deleted file]
Bio/Tools/Blast.pm [deleted file]
Bio/Tools/Blast/CHANGES [deleted file]
Bio/Tools/Blast/HSP.pm [deleted file]
Bio/Tools/Blast/HTML.pm [deleted file]
Bio/Tools/Blast/README [deleted file]
Bio/Tools/Blast/Sbjct.pm [deleted file]
Bio/Tools/CodonTable.pm [deleted file]
Bio/Tools/Coil.pm [deleted file]
Bio/Tools/ECnumber.pm [deleted file]
Bio/Tools/EPCR.pm [deleted file]
Bio/Tools/ESTScan.pm [deleted file]
Bio/Tools/Eponine.pm [deleted file]
Bio/Tools/Est2Genome.pm [deleted file]
Bio/Tools/FootPrinter.pm [deleted file]
Bio/Tools/GFF.pm [deleted file]
Bio/Tools/Gel.pm [deleted file]
Bio/Tools/Genemark.pm [deleted file]
Bio/Tools/Genewise.pm [deleted file]
Bio/Tools/Genomewise.pm [deleted file]
Bio/Tools/Genscan.pm [deleted file]
Bio/Tools/Grail.pm [deleted file]
Bio/Tools/HMMER/Domain.pm [deleted file]
Bio/Tools/HMMER/Results.pm [deleted file]
Bio/Tools/HMMER/Set.pm [deleted file]
Bio/Tools/Hmmpfam.pm [deleted file]
Bio/Tools/IUPAC.pm [deleted file]
Bio/Tools/Lagan.pm [deleted file]
Bio/Tools/Lucy.pm [deleted file]
Bio/Tools/MZEF.pm [deleted file]
Bio/Tools/OddCodes.pm [deleted file]
Bio/Tools/Phylo/Molphy.pm [deleted file]
Bio/Tools/Phylo/Molphy/Result.pm [deleted file]
Bio/Tools/Phylo/PAML.pm [deleted file]
Bio/Tools/Phylo/PAML/Codeml.pm [deleted file]
Bio/Tools/Phylo/PAML/Result.pm [deleted file]
Bio/Tools/Phylo/Phylip/ProtDist.pm [deleted file]
Bio/Tools/Prediction/Exon.pm [deleted file]
Bio/Tools/Prediction/Gene.pm [deleted file]
Bio/Tools/Primer3.pm [deleted file]
Bio/Tools/Prints.pm [deleted file]
Bio/Tools/Profile.pm [deleted file]
Bio/Tools/Promoterwise.pm [deleted file]
Bio/Tools/Pseudowise.pm [deleted file]
Bio/Tools/RepeatMasker.pm [deleted file]
Bio/Tools/RestrictionEnzyme.pm [deleted file]
Bio/Tools/Run/README [deleted file]
Bio/Tools/Run/RemoteBlast.pm [deleted file]
Bio/Tools/Run/StandAloneBlast.pm [deleted file]
Bio/Tools/Run/WrapperBase.pm [deleted file]
Bio/Tools/Seg.pm [deleted file]
Bio/Tools/SeqAnal.pm [deleted file]
Bio/Tools/SeqPattern.pm [deleted file]
Bio/Tools/SeqStats.pm [deleted file]
Bio/Tools/SeqWords.pm [deleted file]
Bio/Tools/Sigcleave.pm [deleted file]
Bio/Tools/Signalp.pm [deleted file]
Bio/Tools/Sim4/Exon.pm [deleted file]
Bio/Tools/Sim4/Results.pm [deleted file]
Bio/Tools/StateMachine/AbstractStateMachine.pm [deleted file]
Bio/Tools/StateMachine/IOStateMachine.pm [deleted file]
Bio/Tools/Tmhmm.pm [deleted file]
Bio/Tools/WWW.pm [deleted file]
Bio/Tools/pICalculator.pm [deleted file]
Bio/Tools/pSW.pm [deleted file]
Bio/Tree/AlleleNode.pm [deleted file]
Bio/Tree/Node.pm [deleted file]
Bio/Tree/NodeI.pm [deleted file]
Bio/Tree/NodeNHX.pm [deleted file]
Bio/Tree/RandomFactory.pm [deleted file]
Bio/Tree/Statistics.pm [deleted file]
Bio/Tree/Tree.pm [deleted file]
Bio/Tree/TreeFunctionsI.pm [deleted file]
Bio/Tree/TreeI.pm [deleted file]
Bio/TreeIO.pm [deleted file]
Bio/TreeIO/TreeEventBuilder.pm [deleted file]
Bio/TreeIO/newick.pm [deleted file]
Bio/TreeIO/nhx.pm [deleted file]
Bio/TreeIO/tabtree.pm [deleted file]
Bio/UpdateableSeqI.pm [deleted file]
Bio/Variation/AAChange.pm [deleted file]
Bio/Variation/AAReverseMutate.pm [deleted file]
Bio/Variation/Allele.pm [deleted file]
Bio/Variation/DNAMutation.pm [deleted file]
Bio/Variation/IO.pm [deleted file]
Bio/Variation/IO/flat.pm [deleted file]
Bio/Variation/IO/xml.pm [deleted file]
Bio/Variation/README [deleted file]
Bio/Variation/RNAChange.pm [deleted file]
Bio/Variation/SNP.pm [deleted file]
Bio/Variation/SeqDiff.pm [deleted file]
Bio/Variation/VariantI.pm [deleted file]
Changes [deleted file]
DEPRECATED [deleted file]
FAQ [deleted file]
INSTALL [deleted file]
INSTALL.WIN [deleted file]
LICENSE [deleted file]
MANIFEST.SKIP [deleted file]
Makefile.PL [deleted file]
PLATFORMS [deleted file]
README [deleted file]
biodatabases.pod [deleted file]
biodesign.pod [deleted file]
bioperl.lisp [deleted file]
bioperl.pod [deleted file]
bioscripts.pod [deleted file]
bptutorial.pl [deleted file]
doc/faq/faq.dtd [deleted file]
doc/faq/faq.pl [deleted file]
doc/faq/faq.xml [deleted file]
doc/howto/BIODATABASE_ACCESS.txt [deleted file]
doc/howto/FLAT-DATABASES-HOWTO.txt [deleted file]
doc/howto/Graphics-HOWTO.txt [deleted file]
doc/howto/PAML.txt [deleted file]
doc/howto/SearchIO.txt [deleted file]
doc/howto/examples/README [deleted file]
doc/howto/examples/graphics/blastn.out [deleted file]
doc/howto/examples/graphics/data1.txt [deleted file]
doc/howto/examples/graphics/embl2picture.pl [deleted file]
doc/howto/examples/graphics/factor7.embl [deleted file]
doc/howto/examples/graphics/render_blast1.pl [deleted file]
doc/howto/examples/graphics/render_blast2.pl [deleted file]
doc/howto/examples/graphics/render_blast3.pl [deleted file]
doc/howto/examples/graphics/render_blast4.pl [deleted file]
doc/howto/examples/graphics/render_features.pl [deleted file]
doc/howto/figs/README [deleted file]
doc/howto/figs/graphics/fig1.png [deleted file]
doc/howto/figs/graphics/fig2.png [deleted file]
doc/howto/figs/graphics/fig3.png [deleted file]
doc/howto/figs/graphics/fig4.png [deleted file]
doc/howto/figs/graphics/fig5.png [deleted file]
doc/howto/figs/graphics/fig6.png [deleted file]
doc/howto/html/Graphics-HOWTO.html [deleted file]
doc/howto/html/README [deleted file]
doc/howto/html/SearchIO.html [deleted file]
doc/howto/html/SeqIO.html [deleted file]
doc/howto/pdf/Graphics-HOWTO.pdf [deleted file]
doc/howto/pdf/SearchIO.pdf [deleted file]
doc/howto/pdf/SeqIO.pdf [deleted file]
doc/howto/sgml/Graphics-HOWTO.sgml [deleted file]
doc/howto/sgml/PAML.sgml [deleted file]
doc/howto/sgml/README [deleted file]
doc/howto/sgml/SearchIO.sgml [deleted file]
doc/howto/sgml/SeqIO.sgml [deleted file]
doc/howto/sgml/SeqIO.xml [deleted file]
doc/makedoc.PL [deleted file]
examples/biblio/biblio_soap.pl [deleted file]
examples/biographics/dynamic_glyphs.pl [deleted file]
examples/biographics/feature_data.gff [deleted file]
examples/biographics/feature_data.txt [deleted file]
examples/biographics/lots_of_glyphs.pl [deleted file]
examples/bioperl.pl [deleted file]
examples/generate_random_seq.pl [deleted file]
examples/liveseq/change_gene.pl [deleted file]
examples/longorf.pl [deleted file]
examples/make_mrna_protein.pl [deleted file]
examples/ontology/simpleGOparser_example.pl [deleted file]
examples/rev_and_trans.pl [deleted file]
examples/revcom_dir.pl [deleted file]
examples/root/README [deleted file]
examples/root/exceptions1.pl [deleted file]
examples/root/exceptions2.pl [deleted file]
examples/root/exceptions3.pl [deleted file]
examples/root/exceptions4.pl [deleted file]
examples/root/lib/Bio/PrimarySeq.pm [deleted file]
examples/root/lib/Bio/PrimarySeqI.pm [deleted file]
examples/root/lib/Bio/Seq.pm [deleted file]
examples/root/lib/Bio/SeqI.pm [deleted file]
examples/root/lib/Error.pm [deleted file]
examples/root/lib/TestInterface.pm [deleted file]
examples/root/lib/TestObject.pm [deleted file]
examples/searchio/blast_example.pl [deleted file]
examples/searchio/custom_writer.pl [deleted file]
examples/searchio/hitwriter.pl [deleted file]
examples/searchio/hspwriter.pl [deleted file]
examples/searchio/htmlwriter.pl [deleted file]
examples/searchio/psiblast_features.pl [deleted file]
examples/searchio/rawwriter.pl [deleted file]
examples/searchio/resultwriter.pl [deleted file]
examples/searchio/waba2gff.pl [deleted file]
examples/subsequence.cgi [deleted file]
models/README [deleted file]
models/biblio.dia [deleted file]
models/bio_liveseq_variation.dia [deleted file]
models/bio_map.dia [deleted file]
models/bioperl.dia [deleted file]
models/coordinatemapper.dia [deleted file]
models/map_proposal.txt [deleted file]
models/maps_and_markers.dia [deleted file]
models/population_proposal.txt [deleted file]
scripts/Bio-DB-GFF/README [deleted file]
scripts/Bio-DB-GFF/bulk_load_gff.PLS [deleted file]
scripts/Bio-DB-GFF/fast_load_gff.PLS [deleted file]
scripts/Bio-DB-GFF/generate_histogram.PLS [deleted file]
scripts/Bio-DB-GFF/load_gff.PLS [deleted file]
scripts/Bio-DB-GFF/process_gadfly.PLS [deleted file]
scripts/Bio-DB-GFF/process_ncbi_human.PLS [deleted file]
scripts/Bio-DB-GFF/process_sgd.PLS [deleted file]
scripts/Bio-DB-GFF/process_wormbase.PLS [deleted file]
scripts/DB/biofetch_genbank_proxy.PLS [deleted file]
scripts/DB/biogetseq.PLS [deleted file]
scripts/DB/flanks.PLS [deleted file]
scripts/biblio/biblio.PLS [deleted file]
scripts/contributed/rebase2list.pl [deleted file]
scripts/das/README [deleted file]
scripts/das/das_server.pl [deleted file]
scripts/graphics/README [deleted file]
scripts/graphics/feature_draw.PLS [deleted file]
scripts/graphics/frend.PLS [deleted file]
scripts/index/bpfetch.PLS [deleted file]
scripts/index/bpindex.PLS [deleted file]
scripts/seq/extract_feature_seq.PLS [deleted file]
scripts/seqstats/aacomp.PLS [deleted file]
scripts/seqstats/chaos_plot.PLS [deleted file]
scripts/seqstats/gccalc.PLS [deleted file]
scripts/seqstats/oligo_count.PLS [deleted file]
scripts/taxa/taxid4species.PLS [deleted file]
scripts/tree/blast2tree.PLS [deleted file]
scripts/utilities/README [deleted file]
scripts/utilities/bp_mrtrans.PLS [deleted file]
scripts/utilities/bp_nrdb.PLS [deleted file]
scripts/utilities/bp_sreformat.PLS [deleted file]
scripts/utilities/dbsplit.PLS [deleted file]
scripts/utilities/pairwise_kaks.PLS [deleted file]
scripts/utilities/remote_blast.PLS [deleted file]
scripts/utilities/seq_length.PLS [deleted file]
t/Promoterwise.t [deleted file]
t/data/503384.MEGABLAST.0 [deleted file]
t/data/503384.MEGABLAST.2 [deleted file]
t/data/5X_1895.FASTXY [deleted file]
t/data/AAC12660.fa [deleted file]
t/data/AB077698.gb [deleted file]
t/data/AE003528_ecoli.bls [deleted file]
t/data/AF165282.gb [deleted file]
t/data/D10483.gbk [deleted file]
t/data/ECAPAH02.embl [deleted file]
t/data/GO.defs.test [deleted file]
t/data/GO.defs.test2 [deleted file]
t/data/Genscan.FastA [deleted file]
t/data/HUMBETGLOA.FASTA [deleted file]
t/data/HUMBETGLOA.fa [deleted file]
t/data/HUMBETGLOA.gff [deleted file]
t/data/HUMBETGLOA.grail [deleted file]
t/data/HUMBETGLOA.grailexp [deleted file]
t/data/HUMBETGLOA.mzef [deleted file]
t/data/HUMBETGLOA.tblastx [deleted file]
t/data/L77119.hmmer [deleted file]
t/data/LL-sample.seq [deleted file]
t/data/LOAD_Ccd1.dnd [deleted file]
t/data/LittleChrY.dbsnp.xml [deleted file]
t/data/SwissProt.dat [deleted file]
t/data/U58726.gb [deleted file]
t/data/a_thaliana.blastn [deleted file]
t/data/aaml.mlc [deleted file]
t/data/acefile.ace.1 [deleted file]
t/data/acefile.singlets [deleted file]
t/data/alnfile.fasta [deleted file]
t/data/amino.fa [deleted file]
t/data/ar.embl [deleted file]
t/data/biodbgff/test.gff [deleted file]
t/data/biographics/feature_data.txt [deleted file]
t/data/biographics/t1/version1.gif [deleted file]
t/data/biographics/t1/version1.png [deleted file]
t/data/biographics/t1/version2.png [deleted file]
t/data/biographics/t1/version3.png [deleted file]
t/data/biographics/t1/version4.png [deleted file]
t/data/biographics/t1/version5.png [deleted file]
t/data/biographics/t2/version1.gif [deleted file]
t/data/biographics/t2/version1.png [deleted file]
t/data/biographics/t2/version2.png [deleted file]
t/data/biographics/t2/version3.png [deleted file]
t/data/biographics/t2/version4.png [deleted file]
t/data/biographics/t2/version5.png [deleted file]
t/data/biographics/t2/version6.png [deleted file]
t/data/biographics/t3/version1.gif [deleted file]
t/data/biographics/t3/version1.png [deleted file]
t/data/biographics/t3/version2.png [deleted file]
t/data/bl2seq.blastn [deleted file]
t/data/bl2seq.blastn.rev [deleted file]
t/data/bl2seq.bug940.out [deleted file]
t/data/bl2seq.out [deleted file]
t/data/blast.report [deleted file]
t/data/chad100.scf [deleted file]
t/data/codeml.mlc [deleted file]
t/data/consed_project/edit_dir/test_project.contigs [deleted file]
t/data/consed_project/edit_dir/test_project.fasta [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.log [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.ace.1 [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.contigs [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.contigs.qual [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.log [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.problems [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.problems.qual [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.qual [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.singlets [deleted file]
t/data/consed_project/edit_dir/test_project.fasta.screen.view [deleted file]
t/data/consed_project/edit_dir/test_project.newtags [deleted file]
t/data/consed_project/edit_dir/test_project.phrap.out [deleted file]
t/data/consed_project/edit_dir/test_project.screen.out [deleted file]
t/data/consed_project/edit_dir/test_projectNewChromats.fof [deleted file]
t/data/consed_project/edit_dir/test_project_to_alu.cross [deleted file]
t/data/consed_project/phd_dir/ML4922R.phd.1 [deleted file]
t/data/consed_project/phd_dir/ML4924F.phd.1 [deleted file]
t/data/consed_project/phd_dir/ML4924R.phd.1 [deleted file]
t/data/consed_project/phd_dir/ML4947F.phd.1 [deleted file]
t/data/cys1_dicdi.water [deleted file]
t/data/cysprot.fa [deleted file]
t/data/cysprot.msf [deleted file]
t/data/cysprot.needle [deleted file]
t/data/cysprot.tblastn [deleted file]
t/data/cysprot.water [deleted file]
t/data/cysprot1.FASTA [deleted file]
t/data/cysprot1.fa [deleted file]
t/data/cysprot1a.fa [deleted file]
t/data/cysprot1a.msf [deleted file]
t/data/cysprot1b.fa [deleted file]
t/data/cysprot1b.hmmsearch [deleted file]
t/data/cysprot1b.msf [deleted file]
t/data/cysprot1b.newick [deleted file]
t/data/cysprot_vs_gadfly.FASTA [deleted file]
t/data/dbfa/1.fa [deleted file]
t/data/dbfa/2.fa [deleted file]
t/data/dbfa/3.fa [deleted file]
t/data/dbfa/4.fa [deleted file]
t/data/dbfa/5.fa [deleted file]
t/data/dbfa/6.fa [deleted file]
t/data/dbfa/7.fa [deleted file]
t/data/dna1.fa [deleted file]
t/data/dna2.fa [deleted file]
t/data/dnaE-bsub-prot.fa [deleted file]
t/data/dnaE-bsub.fa [deleted file]
t/data/dnaEbsub_ecoli.wublastx [deleted file]
t/data/dnaEbsub_ecoli.wutblastn [deleted file]
t/data/dnaEbsub_ecoli.wutblastx [deleted file]
t/data/ecoli_domains.rps.xml [deleted file]
t/data/ecoli_domains.rpsblast [deleted file]
t/data/ecolitst.bls [deleted file]
t/data/ecolitst.fa [deleted file]
t/data/ecolitst.wublastp [deleted file]
t/data/empty.bl2seq [deleted file]
t/data/expected.blast.out [deleted file]
t/data/factor7.embl [deleted file]
t/data/footprinter.out [deleted file]
t/data/genemark.out [deleted file]
t/data/genewise.out [deleted file]
t/data/genewise_output.paracel_btk [deleted file]
t/data/genomewise.out [deleted file]
t/data/genomic-seq.epcr [deleted file]
t/data/genomic-seq.fasta [deleted file]
t/data/genomic-seq.genscan [deleted file]
t/data/genomic-seq.mzef [deleted file]
t/data/gf-s71.needle [deleted file]
t/data/hemoglobinA.meg [deleted file]
t/data/hmmpfam.out [deleted file]
t/data/hmmsearch.out [deleted file]
t/data/hs_est.est2genome [deleted file]
t/data/hs_fugu.newick [deleted file]
t/data/hs_owlmonkey.fasta [deleted file]
t/data/insulin.water [deleted file]
t/data/lucy.info [deleted file]
t/data/lucy.qual [deleted file]
t/data/lucy.seq [deleted file]
t/data/lucy.stderr [deleted file]
t/data/lysozyme6.protml [deleted file]
t/data/lysozyme6.simple.protml [deleted file]
t/data/mapmaker.out [deleted file]
t/data/megablast_output.paracel_btk [deleted file]
t/data/multi_1.fa [deleted file]
t/data/multi_2.fa [deleted file]
t/data/multi_blast.bls [deleted file]
t/data/multifa.seq [deleted file]
t/data/multiseq.bls [deleted file]
t/data/mutations.dat [deleted file]
t/data/mutations.xml [deleted file]
t/data/myco_sites.gff [deleted file]
t/data/neighbor.dist [deleted file]
t/data/no-genes.genscan [deleted file]
t/data/noninterleaved.phy [deleted file]
t/data/omim_genemap_test [deleted file]
t/data/omim_text_test [deleted file]
t/data/pdb1bpt.ent [deleted file]
t/data/phi.out [deleted file]
t/data/phipsi.out [deleted file]
t/data/phredfile.phd [deleted file]
t/data/phylipdist-36.out [deleted file]
t/data/phylipdist.out [deleted file]
t/data/plague_yeast.bls.xml [deleted file]
t/data/polymorphism.dat [deleted file]
t/data/polymorphism.xml [deleted file]
t/data/popgen_saureus.dat [deleted file]
t/data/popgen_saureus.multidat [deleted file]
t/data/primer3_infile.txt [deleted file]
t/data/primer3_outfile.txt [deleted file]
t/data/promoterwise.out [deleted file]
t/data/protpars.phy [deleted file]
t/data/psiblastreport.out [deleted file]
t/data/qualfile.qual [deleted file]
t/data/repeatmasker.fa.out [deleted file]
t/data/revcomp_mrna.gb [deleted file]
t/data/roa1.dat [deleted file]
t/data/roa1.genbank [deleted file]
t/data/roa1.swiss [deleted file]
t/data/seqfile.pir [deleted file]
t/data/seqs.fas [deleted file]
t/data/sequencefamily.dat [deleted file]
t/data/short.blx [deleted file]
t/data/sim4.for.for [deleted file]
t/data/sim4.for.rev [deleted file]
t/data/sim4.rev [deleted file]
t/data/sparsealn.needle [deleted file]
t/data/stress_test_medline.xml [deleted file]
t/data/stress_test_pubmed.xml [deleted file]
t/data/swiss.dat [deleted file]
t/data/swiss_unk.dat [deleted file]
t/data/swisspfam.data [deleted file]
t/data/test.ace [deleted file]
t/data/test.embl [deleted file]
t/data/test.fasta [deleted file]
t/data/test.game [deleted file]
t/data/test.gcg [deleted file]
t/data/test.gcgblast [deleted file]
t/data/test.genbank [deleted file]
t/data/test.genbank.noseq [deleted file]
t/data/test.mase [deleted file]
t/data/test.nh [deleted file]
t/data/test.nhx [deleted file]
t/data/test.pfam [deleted file]
t/data/test.raw [deleted file]
t/data/test.txt [deleted file]
t/data/test.waba [deleted file]
t/data/test_badlf.gcg [deleted file]
t/data/testaln.fasta [deleted file]
t/data/testaln.mase [deleted file]
t/data/testaln.msf [deleted file]
t/data/testaln.nexus [deleted file]
t/data/testaln.pfam [deleted file]
t/data/testaln.phylip [deleted file]
t/data/testaln.prodom [deleted file]
t/data/testaln.selex [deleted file]
t/data/testaln.stockholm [deleted file]
t/data/testdat.exonerate [deleted file]
t/data/testdbaccnums.out [deleted file]
t/data/testfuzzy.genbank [deleted file]
t/data/unigene.data [deleted file]
t/data/version2.scf [deleted file]
t/data/version3.scf [deleted file]
t/data/worm_fam_2785.cdna [deleted file]
t/data/yn00.mlc [deleted file]