3 Bio::DB::GFF::Aggregator::ucsc_ensgene -- UCSC ensGene aggregator
9 # Open the sequence database
10 my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
11 -dsn => 'dbi:mysql:elegans42',
12 -aggregator => ['transcript','clone'],
15 -------------------------------------------------
16 Aggregator method: ensgene
17 Main method: transcript
19 -------------------------------------------------
23 L<Bio::DB::GFF::Aggregator::transcript>
27 package Bio
::DB
::GFF
::Aggregator
::ucsc_ensgene
;
30 use Bio
::DB
::GFF
::Aggregator
;
32 use vars
qw($VERSION @ISA);
33 @ISA = qw(Bio::DB::GFF::Aggregator);
40 Usage : $aggregator->method
41 Function: return the method for the composite object
42 Returns : the string "ensgene"
48 sub method
{ 'ensgene' }
53 Usage : $aggregator->part_names
54 Function: return the methods for the sub-parts
55 Returns : the list "ensGene"
68 Usage : $aggregator->main_name
69 Function: return the method for the main component
70 Returns : the string "transcript"
90 L<Bio::DB::GFF>, L<Bio::DB::GFF::Aggregator>
94 Allen Day E<lt>allenday@ucla.eduE<gt>.
96 Copyright (c) 2002 Allen Day, University of California, Los Angeles.
98 This library is free software; you can redistribute it and/or modify
99 it under the same terms as Perl itself.