A test to ensure Bio::PrimarySeqI->trunc() doesn't use clone() for a Bio::Seq::RichSe...
[bioperl-live.git] / t / data / testaln.fasta
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1 >AK1H_ECOLI/114-431 DESCRIPTION HERE
2 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
3 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
4 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
5 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
6 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
7 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
8 ---FAALARANINIVAIA
9 >AKH_HAEIN 114-431
10 -----------------VEDAVKATIDCRGEKLSIAMMKAWFEARGY-S--VHIVDPVKQ
11 LLAKG-GYLESSVEIEESTKRVDAANIA--K-DKVVLMAGF---TAGNEKGELVLLGRNG
12 SDYSAAC-----------------LAACLGASVCEIWTDVDGVYTCDP--RLVPDARLLP
13 TLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSI-ID--GNVKSESL
14 Q----VKGITNLDNLAMFNVSGPGMQGM---VGMASRVFSAMSGAGISVILITQSSSEYS
15 ---ISFCVPVKSAEVAKTVLETEFA-----NELNEHQLEPIEVIKDLSIISV-VGDGMKQ
16 AKGIAARF------FSALAQANISIVAIA
17 >AKH1_MAIZE/117-440
18 -----------------ATESFSDFVVGHGELWSAQMLSYAIQKSGT-P--CSWMDTREV
19 LVVNPSGANQVDPDYLESEKRLEKWFSRC-P-AETIIATGF---IASTPENIPTTLKRDG
20 SDFSAAI-----------------IGSLVKARQVTIWTDVDGVFSADP--RKVSEAVILS
21 TLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNTSAPGTM-IC--QQPANENG
22 DLEACVKAFATIDKLALVNVEGTGMAGV---PGTANAIFGAVKDVGANVIMISQASSEHS
23 ---VCFAVPEKEVALVSAALHARFR-----EALAAGRLSKVEVIHNCSILAT-VGLRMAS
24 TPGVSATL------FDALAKANINVRAIA
25 >AK2H_ECOLI/112-431
26 -----------------INDAVYAEVVGHGEVWSARLMSAVLNQQG-----LPAAWLDAR
27 EFLRAERAAQPQVDEGLSYPLLQQLLVQH-P-GKRLVVTGF---ISRNNAGETVLLGRNG
28 SDYSATQ-----------------IGALAGVSRVTIWSDVAGVYSADP--RKVKDACLLP
29 LLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLASGTGARI
30 VTSHDDVCLI-EFQVPASQDFKLAHKEI--DQILKRAQVRPLAVGVHNDRQLLQFCYTSE
31 VADSALKILDEAG---------LPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQ
32 PVEFTWQSDDGISLVAVL
33 >AK1_BACSU/66-374
34 -----------------ISPREQDLLLSCGETISSVVFTSMLLDNGVKA--AALTGAQAG
35 FLTNDQHTNAKIIEMKPER--LFSVLAN----HDAVVVAGF---QGATEKGDTTTIGRGG
36 SDTSAAA-----------------LGAAVDAEYIDIFTDVEGVMTADP--RVVENAKPLP
37 VVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYS-NDKGTLVTSHHSSKVGSDV
38 FERLITGIAH-VKDVTQFKVPAKIGQYN-----VQTEVFKAMANAGISVDFFNITPSEIV
39 YTVAGNKTETAQR------------ILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVTSKI
40 ------VSALSEKEIPILQSA
41 >AK2_BACST/63-370
42 -----------------KRE--MDMLLSTGEQVSIALLAMSLHEKGYKA--VSLTGWQAG
43 ITTEEMHGNARIMNIDTT--RIRRCLDE----GAIVIVAGF---QGVTETGEITTLGRGG
44 SDTTAVA-----------------LAAALKAEKCDIYTDVTGVFTTDP--RYVKTARKIK
45 EISYDEMLELANLGAGVLHPRAVEFAKNYEVPLEVRSSME-NERGTMVK--EEVSMEQHL
46 IVRGIAFEDQ-VTRVTVVGIEKYLQSVA--------TIFTALANRGINVDIIIQNA----
47 ----------------TNSETAS--VSFSIRTEDLPETLQVLQ-------------ALEG
48 ADVHYESGLAKVSI-VGSGMISNPGVAARV------FEVLADQGIEIKMVS
49 >AK2_BACSU/63-373
50 -----------------KRE--MDMLLATGEQVTISLLSMALQEKGYDA--VSYTGWQAG
51 IRTEAIHGNARITDIDTS--VLADQLEK----GKIVIVAGF---QGMTEDCEITTLGRGG
52 SDTTAVA-----------------LAAALKVDKCDIYTDVPGVFTTDP--RYVKSARKLE
53 GISYDEMLELANLGAGVLHPRAVEFAKNYQVPLEVRSSTE-TEAGTLIE--EESSMEQNL
54 IVRGIAFEDQ-ITRVTIYGLTSGLTTLS--------TIFTTLAKRNINVDIIIQTQ----
55 ----------------AEDKTG---ISFSVKTEDADQTVAVLEEYK---------DALEF
56 EKIETESKLAKVSI-VGSGMVSNPGVAAEM------FAVLAQKNILIKMVS
57 >AKAB_CORFL/63-379
58 -----------------ARE--MDMLLTAGERISNALVAMAIESLGAEA--QSFTGSQAG
59 VLTTERHGNARIVDVTPG--RVREALDE----GKICIVAGF--QGVNKETRDVTTLGRGG
60 SDTTAVA-----------------LAAALNADVCEIYSDVDGVYTADP--RIVPNAQKLE
61 KLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSMEDIPVEEA
62 VLTGVATDKS-EAKVTVLGISDKPGEAA--------KVFRALADAEINIDMVLQNV----
63 ----------------SSVEDGTTDITFTCPRADGRRAMEILKKLQ---------VQGNW
64 TNVLYDDQVDKVSL-VGAGMKSHPGVTAEF------MEALRDVNVNIELIS
65 >AKAB_MYCSM/63-379
66 -----------------PRE--MDMLLTAGERISNALVAMAIESLGAQA--RSFTGSQAG
67 VITTGTHGNAKIIDVTPG--RLRDALDE----GQIVLVAGF--QGVSQDSKDVTTLGRGG
68 SDTTAVA-----------------VAAALDADVCEIYTDVDGIFTADP--RIVPNARHLD
69 TVSFEEMLEMAACGAKVLMLRCVEYARRYNVPIHVRSSYS-DKPGTIVKGSIEDIPMEDA
70 ILTGVAHDRS-EAKVTVVGLPDVPGYAA--------KVFRAVAEADVNIDMVLQNI----
71 ----------------SKIEDGKTDITFTCARDNGPRAVEKLSALK---------SEIGF
72 SQVLYDDHIGKVSL-IGAGMRSHPGVTATF------CEALAEAGINIDLIS
73 >AK3_ECOLI/106-407
74 -----------------TSPALTDELVSHGELMSTLLFVEILRERD--V--QAQWFDVRK
75 VMRTNDRFGRAEPDIAALAELAALQLLPR-LNEGLVITQGF---IGSENKGRTTTLGRGG
76 SDYTAAL-----------------LAEALHASRVDIWTDVPGIYTTDP--RVVSAAKRID
77 EIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRA
78 LAL--RRNQT-LLTLHSLNMLHSRGFLA--------EVFGILARHNISVDLITTSEVSVA
79 LTLDTTGSTSTG----------DTLLTQSLLMELSALCRVEVEEGLALVALIG-------
80 ---NDLSKACGVGKEVF
81 >AK_YEAST/134-472 A COMMENT FOR YEAST
82 -----------------VSSRTVDLVMSCGEKLSCLFMTALCNDRGCKAKYVDLSHIVPS
83 DFSASALDNSFYTFLVQALKEKLAPFVSA-KERIVPVFTGF---FGLVPTGLLNGVGRGY
84 TDLCAAL-----------------IAVAVNADELQVWKEVDGIFTADP--RKVPEARLLD
85 SVTPEEASELTYYGSEVIHPFTMEQVIRAKIPIRIKNVQNPLGNGTIIYPDNVAKKGEST
86 PPHPPENLSS----SFYEKRKRGATAITTKN----DIFVINIHSNKKTLSHGFLAQIFTI
87 LDKYKLVVDLISTSEVHVSMALPIPDADS-LKSLRQAEEKLRILGSVDITKKLSIVSLVG
88 KHMKQYIGIAG---TMFTTLAEEGINIEMIS