A test to ensure Bio::PrimarySeqI->trunc() doesn't use clone() for a Bio::Seq::RichSe...
[bioperl-live.git] / t / data / sbay_c545-yeast.BLASTZ.PSL
blob47bcf3c4e66dedb93aebbd171a17e174714c5f36
1 916     617     0       0       13      69      10      86      +       I       230203  139870  141472  sbay_c545       28791   12394   14013   24      45,10,9,6,334,104,93,6,6,12,18,119,6,32,376,23,33,133,14,69,12,7,31,35, 139870,139920,139930,139939,139947,140293,140400,140493,140501,140507,140525,140544,140663,140681,140713,141089,141115,141154,141287,141304,141373,141385,141393,141437,        12394,12439,12451,12462,12468,12802,12906,13006,13012,13020,13032,13050,13170,13176,13231,13613,13636,13669,13832,13846,13927,13940,13947,13978,
2 171     119     0       0       2       8       2       5       +       I       230203  174624  174922  sbay_c545       28791   27293   27588   5       125,24,26,5,110,        174624,174749,174776,174807,174812,     27293,27421,27445,27471,27478,
3 102     56      0       0       1       1       2       9       -       I       230203  123813  123972  sbay_c545       28791   27301   27468   4       116,4,19,19,    106231,106347,106351,106371,    27301,27421,27430,27449,
4 65      21      0       0       0       0       1       4       +       II      813140  68257   68343   sbay_c545       28791   10029   10119   2       7,79,   68257,68264,    10029,10040,
5 922     582     0       0       15      73      14      100     +       II      813140  84860   86437   sbay_c545       28791   12373   13977   30      55,31,320,13,107,47,11,33,11,11,4,77,12,67,29,135,232,36,8,16,7,10,89,18,7,56,13,12,7,30,       84860,84915,84956,85286,85301,85411,85458,85472,85508,85521,85532,85538,85615,85631,85698,85727,85865,86097,86145,86165,86181,86191,86201,86290,86311,86318,86374,86387,86399,86407,    12373,12435,12466,12786,12799,12906,12956,12967,13000,13011,13029,13033,13114,13126,13202,13234,13369,13622,13658,13666,13683,13690,13702,13804,13822,13846,13908,13927,13940,13947,
6 79      32      0       0       1       1       1       2       -       II      813140  166297  166409  sbay_c545       28791   10038   10151   3       86,14,11,       646731,646817,646832,   10038,10126,10140,
7 423     272     0       0       0       0       2       9       -       III     315339  189542  190237  sbay_c545       28791   5293    5997    3       131,508,56,     125102,125233,125741,   5293,5427,5941,
8 443     195     0       0       5       35      1       2       +       IV      1531929 366737  367410  sbay_c545       28791   902     1542    7       341,4,22,42,11,21,197,  366737,367090,367102,367124,367169,367185,367213,       902,1243,1247,1271,1313,1324,1345,
9 82      31      0       0       0       0       2       13      +       IV      1531929 778726  778839  sbay_c545       28791   10019   10145   3       11,14,88,       778726,778737,778751,   10019,10031,10057,
10 89      37      0       0       2       4       0       0       -       IV      1531929 1290928 1291058 sbay_c545       28791   10031   10157   3       84,13,29,       240871,240958,240972,   10031,10115,10128,
11 918     588     0       0       18      108     16      114     -       IV      1531929 44092   45706   sbay_c545       28791   12351   13971   35      23,7,13,43,30,135,10,191,52,15,17,11,48,9,53,6,20,146,15,157,8,158,5,9,17,20,13,14,125,31,40,5,18,16,26,        1486223,1486247,1486259,1486284,1486333,1486363,1486498,1486510,1486716,1486768,1486786,1486804,1486817,1486865,1486877,1486932,1486941,1486961,1487107,1487122,1487279,1487297,1487455,1487460,1487469,1487486,1487515,1487538,1487571,1487696,1487727,1487767,1487772,1487792,1487811,        12351,12374,12381,12394,12437,12470,12607,12617,12808,12863,12878,12895,12906,12957,12966,13019,13025,13050,13205,13223,13384,13392,13555,13577,13592,13616,13636,13649,13663,13801,13846,13898,13911,13929,13945,
12 81      44      0       0       1       1       0       0       -       V       576869  142910  143036  sbay_c545       28791   10033   10158   2       94,31,  433833,433928,  10033,10127,
13 991     629     0       0       8       55      13      87      -       V       576869  94727   96402   sbay_c545       28791   12267   13974   22      34,42,37,84,5,371,9,198,12,108,22,21,123,16,221,27,11,145,13,65,9,47,   480467,480514,480570,480607,480698,480703,481074,481086,481285,481308,481416,481438,481464,481587,481603,481825,481852,481863,482008,482021,482086,482095,      12267,12301,12343,12394,12478,12490,12864,12873,13071,13083,13200,13230,13251,13376,13393,13614,13645,13659,13813,13841,13909,13927,
14 66      15      0       0       1       2       1       8       -       VI      270148  186205  186288  sbay_c545       28791   10030   10119   3       15,7,59,        83860,83877,83884,      10030,10045,10060,
15 1688    962     0       0       10      43      15      175     -       VII     1090936 628575  631268  sbay_c545       28791   6807    9632    26      219,20,125,11,15,104,51,21,212,16,24,6,13,84,47,10,336,8,959,24,11,22,20,6,22,264,      459668,459887,459908,460036,460059,460080,460187,460240,460261,460473,460489,460513,460519,460532,460625,460672,460686,461024,461033,461992,462016,462027,462049,462069,462075,462097,  6807,7027,7047,7172,7183,7198,7302,7353,7388,7602,7636,7663,7677,7692,7776,7827,7837,8173,8181,9154,9227,9241,9290,9322,9331,9368,
16 298     102     0       0       3       10      0       0       -       VII     1090936 619156  619566  sbay_c545       28791   18118   18518   4       193,8,81,118,   471370,471564,471573,471662,    18118,18311,18319,18400,
17 285     103     0       0       1       1       1       3       -       VII     1090936 618080  618469  sbay_c545       28791   24049   24440   3       188,172,28,     472467,472656,472828,   24049,24237,24412,
18 104     62      0       0       2       10      1       7       +       VIII    562639  270904  271080  sbay_c545       28791   27336   27509   4       99,9,28,30,     270904,271005,271022,271050,    27336,27435,27444,27479,
19 207     136     0       0       2       19      6       28      -       VIII    562639  316825  317187  sbay_c545       28791   27172   27543   9       20,11,30,20,7,13,155,4,83,      245452,245472,245487,245532,245552,245559,245572,245727,245731, 27172,27193,27204,27234,27257,27268,27298,27454,27460,
20 84      23      0       0       0       0       2       20      -       IX      439885  105317  105424  sbay_c545       28791   10030   10157   3       15,62,30,       334461,334476,334538,   10030,10054,10127,
21 462     268     0       0       4       35      8       25      +       X       745440  67814   68579   sbay_c545       28791   5244    5999    13      23,13,27,95,20,11,9,7,391,16,53,16,49,  67814,67837,67855,67891,67986,68006,68017,68026,68051,68445,68461,68514,68530,  5244,5268,5281,5308,5406,5431,5448,5458,5465,5856,5875,5933,5950,
22 1108    665     0       0       5       21      15      78      +       X       745440  519403  521197  sbay_c545       28791   12123   13974   21      14,6,39,69,174,6,623,18,11,11,81,47,140,13,225,19,143,18,60,9,47,       519403,519423,519429,519468,519537,519713,519719,520344,520362,520374,520395,520476,520523,520663,520676,520901,520920,521063,521081,521141,521150,     12123,12137,12149,12197,12269,12443,12451,13074,13093,13104,13115,13199,13255,13397,13411,13639,13661,13814,13846,13909,13927,
23 55      19      0       0       0       0       0       0       -       X       745440  469796  469870  sbay_c545       28791   10060   10134   1       74,     275570, 10060,
24 909     581     0       0       9       54      15      90      -       X       745440  381175  382719  sbay_c545       28791   12394   13974   25      50,5,348,67,21,13,166,20,99,18,156,12,11,167,28,12,15,6,4,125,31,44,25,6,41,    362721,362773,362779,363133,363200,363229,363242,363408,363431,363530,363548,363704,363718,363733,363923,363951,363968,363983,363989,363993,364118,364149,364193,364218,364224, 12394,12444,12449,12797,12868,12889,12903,13072,13092,13200,13221,13383,13395,13406,13573,13619,13631,13647,13656,13663,13801,13846,13893,13920,13933,
25 387     246     0       0       6       34      4       34      -       X       745440  250596  251263  sbay_c545       28791   26968   27635   11      95,23,19,3,6,75,15,43,16,321,17,        494177,494284,494310,494329,494336,494342,494419,494435,494478,494506,494827,   26968,27063,27086,27106,27109,27118,27193,27208,27269,27285,27618,
26 69      33      0       0       0       0       0       0       -       X       745440  250471  250573  sbay_c545       28791   27802   27904   1       102,    494867, 27802,
27 81      43      0       0       0       0       0       0       -       XI      666445  183812  183936  sbay_c545       28791   27301   27425   1       124,    482509, 27301,
28 899     599     0       0       11      55      11      85      +       XII     1078172 95925   97478   sbay_c545       28791   12394   13977   23      45,10,9,6,334,104,93,6,6,12,18,119,6,32,376,23,33,119,16,12,57,11,51,   95925,95975,95985,95994,96002,96348,96455,96548,96556,96562,96580,96599,96718,96736,96768,97144,97170,97209,97328,97344,97359,97416,97427,      12394,12439,12451,12462,12468,12802,12906,13006,13012,13020,13032,13050,13170,13176,13231,13613,13636,13669,13801,13834,13846,13909,13926,
29 14247   3493    0       0       57      258     76      314     -       XII     1078172 855634  873632  sbay_c545       28791   0       18054   134     45,9,762,6,16,9,12,14,9,426,253,98,327,24,68,18,43,57,190,32,275,796,729,668,22,72,9,31,20,39,18,1089,21,96,33,8,47,19,16,46,26,16,16,12,49,18,9,39,18,1398,1698,206,26,16,449,306,107,16,45,22,14,25,36,18,21,12,41,9,31,8,18,457,82,25,30,10,23,6,7,12,41,9,14,1994,38,30,26,9,18,13,28,1842,25,14,16,13,69,41,271,28,38,10,27,12,51,225,33,14,12,163,33,37,66,6,25,10,19,13,23,19,78,28,10,94,35,53,20,15,15,23,20,14,15,96, 204540,204594,204604,205366,205372,205388,205398,205410,205424,205434,205860,206113,206211,206539,206563,206633,206652,206696,206754,206944,206976,207251,208050,208851,209519,209541,209626,209650,209681,209701,209740,209764,210854,210876,210984,211017,211025,211072,211091,211109,211155,211181,211199,211220,211233,211286,211304,211313,211352,211370,212771,214478,214684,214710,214726,215175,215481,215588,215606,215651,215673,215687,215713,215753,215771,215792,215813,215854,215864,215895,215903,215921,216384,216470,216495,216525,216535,216563,216570,216578,216590,216631,216643,216658,218653,218691,218721,218747,218761,218780,218796,218824,220666,220691,220709,220728,220741,220810,220853,221124,221152,221191,221201,221228,221240,221294,221522,221555,221570,221593,221756,221789,221827,221893,221899,221924,221935,221956,221969,221993,222013,222094,222122,222132,222226,222261,222314,222336,222354,222369,222392,222412,222427,222442,      0,45,54,817,824,841,850,866,881,890,1319,1590,1703,2030,2055,2123,2141,2184,2241,2449,2484,2765,3561,4290,4959,4982,5054,5063,5095,5116,5159,5177,6266,6287,6383,6417,6426,6482,6502,6518,6567,6596,6612,6628,6640,6689,6709,6719,6760,6782,8180,9878,10090,10119,10144,10599,10915,11023,11039,11085,11108,11123,11148,11184,11207,11231,11243,11286,11295,11339,11354,11374,11831,11913,11939,11971,11982,12005,12011,12018,12031,12073,12082,12096,14090,14129,14177,14204,14213,14231,14244,14283,16126,16152,16166,16182,16197,16268,16309,16587,16616,16654,16671,16702,16715,16766,16991,17025,17039,17051,17217,17251,17288,17362,17373,17400,17410,17429,17443,17466,17485,17563,17599,17625,17720,17756,17810,17830,17845,17866,17903,17924,17938,17958,
30 3388    970     0       0       21      71      33      128     -       XII     1078172 850217  854646  sbay_c545       28791   24305   28791   55      91,8,19,78,38,351,19,8,93,52,38,22,26,17,13,25,261,55,19,21,55,25,13,34,7,19,15,29,668,9,10,11,6,68,20,53,7,13,22,11,16,28,14,49,20,29,26,11,8,746,24,12,938,56,32,     223526,223625,223633,223652,223741,223780,224131,224150,224158,224251,224312,224350,224372,224398,224416,224430,224456,224717,224772,224793,224815,224870,224895,224908,224942,224950,224969,224984,225013,225683,225694,225704,225716,225731,225799,225819,225872,225879,225892,225914,225926,225942,225971,225988,226041,226061,226090,226125,226136,226146,226892,226916,226928,227866,227923,       24305,24396,24406,24443,24521,24559,24912,24939,24949,25044,25096,25135,25161,25188,25205,25218,25243,25505,25562,25581,25602,25660,25686,25700,25737,25744,25764,25780,25812,26480,26489,26500,26511,26517,26587,26611,26665,26673,26689,26712,26723,26740,26768,26782,26831,26852,26884,26910,26926,26934,27707,27735,27764,28703,28759,
31 66      23      0       0       0       0       0       0       +       XIII    924430  86939   87028   sbay_c545       28791   10030   10119   1       89,     86939,  10030,
32 920     583     0       0       18      111     16      117     -       XIV     784328  252084  253698  sbay_c545       28791   12351   13971   35      29,14,43,30,135,8,105,15,71,52,15,17,11,48,9,53,6,20,146,15,157,8,158,5,9,17,20,13,14,125,31,50,11,17,26,       530630,530665,530691,530740,530770,530905,530915,531022,531037,531123,531175,531193,531211,531224,531272,531284,531339,531348,531368,531514,531529,531686,531704,531862,531867,531876,531893,531922,531945,531978,532103,532134,532187,532198,532218,   12351,12380,12394,12437,12470,12607,12615,12720,12737,12808,12863,12878,12895,12906,12957,12966,13019,13025,13050,13205,13223,13384,13392,13555,13577,13592,13616,13636,13649,13663,13801,13846,13896,13928,13945,
33 162     102     0       0       1       1       2       10      -       XIV     784328  70957   71222   sbay_c545       28791   27120   27394   4       38,12,103,111,  713106,713145,713157,713260,    27120,27158,27171,27283,
34 1536    428     0       0       5       29      5       19      +       XV      1091283 459446  461439  sbay_c545       28791   18756   20739   11      12,7,1816,9,13,18,34,21,12,13,9,        459446,459458,459465,461298,461307,461320,461340,461375,461396,461411,461430,   18756,18773,18782,20598,20611,20625,20643,20677,20705,20717,20730,
35 1608    513     0       0       6       48      6       36      +       XV      1091283 698738  700907  sbay_c545       28791   21813   23970   13      25,13,1791,6,30,49,11,5,25,16,16,45,89, 698738,698763,698779,700570,700576,700607,700656,700667,700679,700713,700742,700773,700818,     21813,21842,21855,23660,23669,23699,23757,23770,23775,23800,23816,23832,23881,
36 59      27      0       0       0       0       0       0       -       XV      1091283 110777  110863  sbay_c545       28791   10033   10119   1       86,     980420, 10033,
37 147     87      0       0       1       1       1       10      -       XV      1091283 105814  106049  sbay_c545       28791   27147   27391   3       115,14,105,     985234,985350,985364,   27147,27262,27286,
38 62      30      0       0       0       0       0       0       +       XVI     948061  156852  156944  sbay_c545       28791   27301   27393   1       92,     156852, 27301,
39 65      26      0       0       1       1       0       0       -       XVI     948061  897071  897163  sbay_c545       28791   10043   10134   2       78,13,  50898,50977,    10043,10121,