A test to ensure Bio::PrimarySeqI->trunc() doesn't use clone() for a Bio::Seq::RichSe...
[bioperl-live.git] / t / data / footprinter.out
blobf54ffe67ae7ed339e2dcf9526babb116a59fa6a4
1 >TETRAODON
2 tcgtcaatgccctaatataattcttagtaaaaatacaggtataaaaatgcaacgtattttaatacaggcattttaataca
3                                                                                 
4                                                                                 
6 ggtatacaaatggcacgtattgtttgaaacctttaaacatgtgataagtgttaacacgtacactagccgtgtgtttttac
7                                                                                 
8                                                                                 
10 tggaactgctcaaacaatacgtggtgtttaagtttacttttgatgtacttttgtagtgttggatgtacttttgctgaccg
11                                                                                 
12                                                                                 
14 ttatcccagttctttagttttcacaacagctgttgtgtttgttgtcttacgtaacgtggtgcagatgtcgccaatgccgg
15                                                                                 
16                                                                                 
18 agagcctgtttcccagcaggcccgccccttttacaggatgcaccatatttggaaaatgacgtactggggatcccgtttct
19                                2222222222222222222222                           
20                                2222222222211111111111                           
22 ggaatattccatttattggaggtaccattaaacgacaacttttacgttagaatttccgctttaaacggtaaaaattctca
23                                                                                 
24                                                                                 
26 aatatgttaagtttttgcgtgttagatagaagaacgtgagtggttttgtgttactgccgcgttgttaggtcggtgttttg
27                                                                                 
28                                                                                 
30 gtgtttgcttcgcggcgtttgaaagggaacgctccccttttgctgacgtcatcagctcaggctatataagcgcgcgtgcg
31                                                                                 
32                                                                                 
34 gcgactccgccgaaagtttcagacgagagcaagagaagccagagcacgtccgcgggctcacacaccgacctgaccgaaga
35                                                                                 
36                                                                                 
38 ttccctcctttccagggttgaaatcccgaccgcagcctttgtttggatttaccagcttgctttttttcgcccggacagcg
39                                                                                 
40                                                                                 
46 >CHICKEN
47 ggctctccggagggccacgcggccccggggccgccccgcactgcttcccggccctccgtgcgcgtgaccccgccgggcgg
48                                                                                 
49                                                                                 
51 acgcgtccccgccgcgagccgcgacggccccgcacacgcggcacccgcccgccgcagggcacggggacgaagggcgccgc
52                                                                                 
53                                                                                 
55 gccccgccgcgccccacgcgtggccgcgcccggccccgttagtacggaacccccgccgggccgctcggggcggggggtgc
56                                                                                 
57                                                                                 
59 cggcggccggggggcgctacgcgggggggggggggggctggggcggccccgtcccaccgcgtcccgtcccgcgccgcact
60                                                                                 
61                                                                                 
63 tggccgcagcctggagcgcttcccgtcagtcacgccccctcgcacaggatgtatcccatataaggatatctgcgtcagtg
64                                           22222222222  22222222222              
65                                           22222222222  11111111111              
67 ggttcccgagcccggccgtaccactccgcgaggggggggggaaacccggaaccgctccccccgccccgccgcgctcctcc
68                                                                                 
69                                                                                 
71 cgccccgcggccccgttgttcccggcgcccggcggctcggcagggcgggcggcggggccgggcggggcgggacgagacgg
72                                                                                 
73                                                                                 
75 acgcgggcagagaggccccctccgcgggcgggcgtggtgcgtcccacgtgacgtaggcgattcacgcggcggcagggtat
76                                                                                 
77                                                                                 
79 aaagggggcggcgccgagcgatactccagcggcagaggcagctccgacagcggagagagagacgcgcggcgcggaccgga
80                                                                                 
81                                                                                 
83 cacagggacgcagccggcccctcttcgccttctcccgcagggcgctccgctagcaccgcacggccccgcaaacagccgac
84                                                                                 
85                                                                                 
91 >MOUSE
92 ataccagagactcaaaaaaaaaaaaaaagttccagattgctggacaatgacccgggtctcatcccttgaccctgggaacc
93                                                                                 
94                                                                                 
96 gggtccacattgaatcaggtgcgaatgttcgctcgccttctctgcctttcccgcctcccctcccccggccgcggccccgg
97                                                                                 
98                                                                                 
100 ttccccccctgcgctgcaccctcagagttggctgcagccggcgagctgttcccgtcaatccctccctcctttacacagga
101                                                                          2222222
102                                                                          2222222
104 tgtccatattaggacatctgcgtcagcaggtttccacggccggtccctgttgttctgggggggggaccatctccgaaatc
105 22222222222222                                                                  
106 22211111111111                                                                  
108 ctacacgcggaaggtctaggagaccccctaagatcccaaatgtgaacactcataggtgaaagatgtatgccaagacgggg
109                                                                                 
110                                                                                 
112 gttgaaagcctggggcgtagagttgacgacagagcgcccgcagagggccttggggcgcgcttccccccccttccagttcc
113                                                                                 
114                                                                                 
116 gcccagtgacgtaggaagtccatccattcacagcgcttctataaaggcgccagctgaggcgcctactactccaaccgcga
117                                                                                 
118                                                                                 
120 ctgcagcgagcaactgagaagactggatagagccggcggttccgcgaacgagcagtgaccgcgctcccacccagctctgc
121                                                                                 
122                                                                                 
124 tctgcagctcccaccagtgtctacccctggaccccttgccgggctttccccaaacttcgacc
125                                                               
126                                                               
128 >HAMSTER
129 ggctgagaaaattataacatttttttttgcactgatttgcggtgggcaagcttttcaagcctttagggctgcgtaccagt
130                                                                                 
131                                                                                 
133 ttctcctaatatcagattcagaaatgtcccaaattcctggacaatggaaaggaggcgacccccgccccccccaccccagt
134                                                                                 
135                                                                                 
137 ttcatggccctgacctgggaacagggtccacattgaatcaggtgcgaatgttcgctcgccttctctacctttcccgcctc
138                                                                                 
139                                                                                 
141 ccctcccccggccgcggccccagctcccccctcccccgcgctgcaccctcagagttggctgcagccggcaagcagttccc
142                                                                                 
143                                                                                 
145 gtcaatccctttcccacaggatgtccatattaggacatctgcgtcagcaggtttccacggccggtccttgtagacctggg
146               222222222222222222222                                             
147               222222222211111111111                                             
149 ggtgacgatccccaaaatcctacatgcggagagtccaggagaccccctaagacccctattgtgaacacaaatgggtgaaa
150                                                                                 
151                                                                                 
153 attacatgtcaagacggaggcgggggacccggggcgcggagttgacgccagggcggccgcagaaggcctgggggcgcgcg
154                                                                                 
155                                                                                 
157 gctcccctccgtcgccacagttccgcccagtgacgtgtaatgttcattcacaagcgcttctataaaggcaccggctgagg
158                                                                                 
159                                                                                 
161 cgcctactactccaaccgcgactgcagctagcgactgagaagactggatagagccggcggcgggaacgagcagtgaccgc
162                                                                                 
163                                                                                 
165 gctcccacccagctctgctccgcagctcgcaccagtgtctacccctggacccctcgccggactttccctagatctcgacc
166                                                                                 
167                                                                                 
173 >HUMAN
174 agaattggggatgggggtaggggcgcattccttcgggagccgaggcttaagtcctcggggtcctgtactcgatgccgttt
175                                                                                 
176                                                                                 
178 ctcctatctctgagcctcagaactgtcttcagtttccgtacaagggtaaaaaggcgctctctgccccatcccccccgacc
179                                                                                 
180                                                                                 
182 tcgggaacaagggtccgcattgaaccaggtgcgaatgttctctctcattctgcgccgttcccgcctcccctcccccagcc
183                                                                                 
184                                                                                 
186 gcggcccccgcctccccccgcactgcaccctcggtgttggctgcagcccgcgagcagttcccgtcaatccctcccccctt
187                                                                                 
188                                                                                 
190 acacaggatgtccatattaggacatctgcgtcagcaggtttccacggcctttccctgtagccctggggggagccatcccc
191  222222222222222222222                                                          
192  222222222211111111111                                                          
194 gaaacccctcatcttggggggcccacgagacctctgagacaggaactgcgaaatgctcacgagattaggacacgcgccaa
195                                                                                 
196                                                                                 
198 ggcgggggcagggagctgcgagcgctggggacgcagccgggcggccgcagaagcgcccaggcccgcgcgccacccctctg
199                                                                                 
200                                                                                 
202 gcgccaccgtggttgagcccgtgacgtttacactcattcataaaacgcttgttataaaagcagtggctgcggcgcctcgt
203                                                                                 
204                                                                                 
206 actccaaccgcatctgcagcgagcaactgagaagccaagactgagccggcggccgcggcgcagcgaacgagcagtgaccg
207                                                                                 
208                                                                                 
210 tgctcctacccagctctgcttcacagcgcccacctgtctccgcccctcggcccctcgcccggctttgcctaaccgccacg
211                                                                                 
212                                                                                 
218 >PIG
219 gcaccgaattagtgatagaatgaggaatgggggtggaggcgcattccttcgggggccaaggcttaagcccaaggggctgt
220                                                                                 
221                                                                                 
223 gtacctatctcgcctatacctgaacctcagaactcttcccgggtttctgtacacaagtaaaaaggcgcctacgccccatc
224                                                                                 
225                                                                                 
227 ccccaaccccgggaacaagggtccgcattgaaccaggtgcgaatgttcgctcgccttctctgcctttcccgcctcccctc
228                                                                                 
229                                                                                 
231 cccccggccacggcccccgcctcccccccgcgctgcacccttggtgttggctgcagcccgcgagcagttcccgtcaatcc
232                                                                                 
233                                                                                 
235 ctccctcccgtttacacaggatgtccatattaggacatctgcgtcagcaggtttccacggccgttccctgaagttgtggg
236               222222222222222222222                                             
237               222222222211111111111                                             
239 gggagccatccccgaagtccctcattttagggggtctacgcgaccccaagaccgagactgagaaaagctcagaagataaa
240                                                                                 
241                                                                                 
243 gaaacacaataagacgaaaggcagggggctgagacggcggaagaggcagcaaagaggctgcagaggtggcaagatccgag
244                                                                                 
245                                                                                 
247 cgccacccctcgagagctgcaatggtagcgctccgtgacgtattgggctcattcataaaatgctgttataaaagcagtgg
248                                                                                 
249                                                                                 
251 cctagtactccaaccgcatctgcagcgagcagctaagctgagacagaaccggcagcggcgcagcgagcgagcagcgaccg
252                                                                                 
253                                                                                 
255 cgctcttacccagctcagccccgcagctcctacctgtctccgcccctcagcccctcgcccggctttgactacctgcgatc
256                                                                                 
257