| blob | cf9182e1ba26056b96eb315e6743a31742a5c507 |
1 YN00 examples/small_taxon_set.nuc
3 ns = 9 ls = 475
5 Codon position x base (3x4) table for each sequence.
7 Pdel181_DNA2
8 position 1: T:0.18105 C:0.19368 A:0.23579 G:0.38947
9 position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
10 position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
12 Pfre186_DNA2
13 position 1: T:0.18105 C:0.19368 A:0.23789 G:0.38737
14 position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
15 position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
17 Pgra187_DNA2
18 position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
19 position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
20 position 3: T:0.42105 C:0.15158 A:0.28632 G:0.14105
22 Phet26_DNA21
23 position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
24 position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
25 position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
27 Pmex37_DNA21
28 position 1: T:0.18105 C:0.19158 A:0.23789 G:0.38947
29 position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
30 position 3: T:0.41895 C:0.15789 A:0.28211 G:0.14105
32 Ptre197_DNA2
33 position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
34 position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
35 position 3: T:0.42316 C:0.15158 A:0.28421 G:0.14105
37 WHR1_DNA225
38 position 1: T:0.18105 C:0.19158 A:0.23579 G:0.39158
39 position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
40 position 3: T:0.41684 C:0.15579 A:0.28211 G:0.14526
42 YALD273_DNA5
43 position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
44 position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
45 position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
47 Pop_trich_ch
48 position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
49 position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
50 position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
52 Average
53 position 1: T:0.18105 C:0.19275 A:0.23649 G:0.38971
54 position 2: T:0.26480 C:0.23041 A:0.30105 G:0.20374
55 position 3: T:0.41942 C:0.15579 A:0.28421 G:0.14058
57 Codon usage for each species
58 --------------------------------------------------------------------------------------------------------------
59 Phe TTT 14 14 14 14 14 14 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 13 13 13 13 13 13 | Cys TGT 5 5 5 5 5 5
60 TTC 8 8 8 8 8 8 | TCC 4 4 4 4 4 4 | TAC 4 4 4 4 4 4 | TGC 3 3 3 3 3 3
61 Leu TTA 9 9 9 9 9 9 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
62 TTG 10 10 10 10 10 10 | TCG 1 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
63 --------------------------------------------------------------------------------------------------------------
64 Leu CTT 9 9 9 9 9 9 | Pro CCT 11 11 12 11 10 12 | His CAT 9 9 9 9 9 9 | Arg CGT 11 11 11 11 11 11
65 CTC 0 0 0 0 0 0 | CCC 6 6 5 6 6 5 | CAC 5 5 5 5 5 5 | CGC 5 5 5 5 5 5
66 CTA 9 9 9 10 9 9 | CCA 3 3 3 3 3 3 | Gln CAA 10 10 9 10 10 9 | CGA 6 6 6 6 6 6
67 CTG 4 4 4 3 4 4 | CCG 2 2 2 2 2 2 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
68 --------------------------------------------------------------------------------------------------------------
69 Ile ATT 10 11 10 10 11 10 | Thr ACT 17 17 18 16 17 18 | Asn AAT 9 9 9 9 9 9 | Ser AGT 1 1 2 2 2 2
70 ATC 9 9 7 9 9 8 | ACC 8 8 8 8 8 8 | AAC 6 6 6 6 6 6 | AGC 3 3 3 3 3 3
71 ATA 1 1 4 2 1 3 | ACA 6 6 5 5 5 5 | Lys AAA 18 18 18 18 18 18 | Arg AGA 6 6 6 6 6 6
72 Met ATG 10 10 10 9 10 10 | ACG 1 1 1 1 1 1 | AAG 6 6 6 6 6 6 | AGG 1 1 1 1 1 1
73 --------------------------------------------------------------------------------------------------------------
74 Val GTT 15 14 14 15 14 14 | Ala GCT 24 24 23 24 24 24 | Asp GAT 22 22 22 22 22 22 | Gly GGT 23 23 23 23 23 23
75 GTC 1 1 1 1 1 1 | GCC 5 5 5 5 5 4 | GAC 5 5 6 6 6 6 | GGC 2 2 2 2 2 2
76 GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 13 13 13
77 GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 10 10 9 9 9 9 | GGG 9 9 9 9 9 9
78 --------------------------------------------------------------------------------------------------------------
80 --------------------------------------------------------------------------
81 Phe TTT 14 14 14 | Ser TCT 5 6 6 | Tyr TAT 13 13 13 | Cys TGT 5 5 5
82 TTC 8 8 8 | TCC 5 4 4 | TAC 4 4 4 | TGC 3 3 3
83 Leu TTA 9 9 9 | TCA 1 1 1 | *** TAA 0 0 0 | *** TGA 0 0 0
84 TTG 10 10 10 | TCG 1 1 1 | TAG 0 0 0 | Trp TGG 8 8 8
85 --------------------------------------------------------------------------
86 Leu CTT 9 9 9 | Pro CCT 10 11 11 | His CAT 9 9 9 | Arg CGT 11 11 11
87 CTC 0 0 0 | CCC 6 6 6 | CAC 5 5 5 | CGC 5 5 5
88 CTA 9 10 10 | CCA 3 3 3 | Gln CAA 10 10 10 | CGA 6 6 6
89 CTG 4 3 3 | CCG 2 2 2 | CAG 2 2 2 | CGG 0 0 0
90 --------------------------------------------------------------------------
91 Ile ATT 10 10 10 | Thr ACT 17 16 16 | Asn AAT 9 9 9 | Ser AGT 2 2 2
92 ATC 8 9 9 | ACC 8 8 8 | AAC 6 6 6 | AGC 3 3 3
93 ATA 2 2 2 | ACA 5 5 5 | Lys AAA 18 18 18 | Arg AGA 6 6 6
94 Met ATG 10 9 9 | ACG 1 1 1 | AAG 6 6 6 | AGG 1 1 1
95 --------------------------------------------------------------------------
96 Val GTT 15 15 15 | Ala GCT 24 24 24 | Asp GAT 22 22 22 | Gly GGT 23 23 23
97 GTC 1 1 1 | GCC 5 5 5 | GAC 5 6 6 | GGC 2 2 2
98 GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
99 GTG 4 4 4 | GCG 1 0 0 | GAG 10 9 9 | GGG 9 9 9
100 --------------------------------------------------------------------------
103 Sums
104 --------------------------------------------------
105 Phe TTT 126 | Ser TCT 53 | Tyr TAT 117 | Cys TGT 45
106 TTC 72 | TCC 37 | TAC 36 | TGC 27
107 Leu TTA 81 | TCA 9 | *** TAA 0 | *** TGA 0
108 TTG 90 | TCG 9 | TAG 0 | Trp TGG 72
109 --------------------------------------------------
110 Leu CTT 81 | Pro CCT 99 | His CAT 81 | Arg CGT 99
111 CTC 0 | CCC 52 | CAC 45 | CGC 45
112 CTA 84 | CCA 27 | Gln CAA 88 | CGA 54
113 CTG 33 | CCG 18 | CAG 18 | CGG 0
114 --------------------------------------------------
115 Ile ATT 92 | Thr ACT 152 | Asn AAT 81 | Ser AGT 16
116 ATC 77 | ACC 72 | AAC 54 | AGC 27
117 ATA 18 | ACA 47 | Lys AAA 162 | Arg AGA 54
118 Met ATG 87 | ACG 9 | AAG 54 | AGG 9
119 --------------------------------------------------
120 Val GTT 131 | Ala GCT 215 | Asp GAT 198 | Gly GGT 207
121 GTC 9 | GCC 44 | GAC 51 | GGC 18
122 GTA 115 | GCA 141 | Glu GAA 218 | GGA 117
123 GTG 36 | GCG 1 | GAG 84 | GGG 81
124 --------------------------------------------------
128 (A) Nei-Gojobori (1986) method
132 Nei & Gojobori 1986. dN/dS (dN, dS)
133 (Note: This matrix is not used in later ML. analysis.
134 Use runmode = -2 for ML pairwise comparison.)
136 Pdel181_DNA2
137 Pfre186_DNA2 -1.0000 (0.0009 0.0000)
138 Pgra187_DNA2 1.0623 (0.0093 0.0088) 1.1684 (0.0102 0.0088)
139 Phet26_DNA21 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)
140 Pmex37_DNA21 -1.0000 (0.0046 0.0000)-1.0000 (0.0037 0.0000) 0.9534 (0.0084 0.0088) 0.9555 (0.0028 0.0029)
141 Ptre197_DNA2 1.5965 (0.0093 0.0058) 1.7561 (0.0102 0.0058) 0.0000 (0.0000 0.0088) 0.6357 (0.0056 0.0088) 1.4328 (0.0084 0.0058)
142 WHR1_DNA225 0.7964 (0.0046 0.0058) 0.9557 (0.0056 0.0058) 0.4430 (0.0065 0.0147) 0.3175 (0.0028 0.0088) 0.6354 (0.0037 0.0058) 0.5548 (0.0065 0.0117)
143 YALD273_DNA5 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)
144 Pop_trich_ch 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)-1.0000 (0.0000 0.0000)
147 (B) Yang & Nielsen (2000) method
149 Yang Z, Nielsen R (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43
151 (equal weighting of pathways)
153 seq. seq. S N t kappa omega dN +- SE dS +- SE
155 2 1 337.9 1087.1 0.0021 4.2358 99.0000 0.0009 +- 0.0009 -0.0000 +- 0.0000
156 3 1 335.1 1089.9 0.0276 4.2358 1.0246 0.0092 +- 0.0029 0.0090 +- 0.0052
157 3 2 334.8 1090.2 0.0297 4.2358 1.1268 0.0102 +- 0.0031 0.0090 +- 0.0052
158 4 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
159 4 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
160 4 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
161 5 1 338.1 1086.9 0.0106 4.2358 99.0000 0.0046 +- 0.0021 -0.0000 +- 0.0000
162 5 2 337.8 1087.2 0.0084 4.2358 99.0000 0.0037 +- 0.0018 -0.0000 +- 0.0000
163 5 3 335.0 1090.0 0.0254 4.2358 0.9214 0.0083 +- 0.0028 0.0090 +- 0.0052
164 5 4 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
165 6 1 334.8 1090.2 0.0254 4.2358 1.5397 0.0092 +- 0.0029 0.0060 +- 0.0042
166 6 2 334.5 1090.5 0.0276 4.2358 1.6932 0.0102 +- 0.0031 0.0060 +- 0.0042
167 6 3 331.7 1093.3 0.0064 4.2358 0.0000 -0.0000 +- 0.0000 0.0091 +- 0.0053
168 6 4 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
169 6 5 334.7 1090.3 0.0233 4.2358 1.3847 0.0083 +- 0.0028 0.0060 +- 0.0042
170 7 1 338.8 1086.2 0.0148 4.2358 0.7790 0.0046 +- 0.0021 0.0059 +- 0.0042
171 7 2 338.5 1086.5 0.0169 4.2358 0.9344 0.0055 +- 0.0023 0.0059 +- 0.0042
172 7 3 335.7 1089.3 0.0255 4.2358 0.4278 0.0065 +- 0.0024 0.0151 +- 0.0068
173 7 4 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
174 7 5 338.7 1086.3 0.0127 4.2358 0.6226 0.0037 +- 0.0018 0.0059 +- 0.0042
175 7 6 335.4 1089.6 0.0233 4.2358 0.5368 0.0065 +- 0.0024 0.0120 +- 0.0060
176 8 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
177 8 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
178 8 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
179 8 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
180 8 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
181 8 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
182 8 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
183 9 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
184 9 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
185 9 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
186 9 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
187 9 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
188 9 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
189 9 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
190 9 8 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
193 (C) LWL85, LPB93 & LWLm methods
195 Li W.-H., C.-I. Wu, Luo (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
196 Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99
197 Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes - rates and interdependence between the genes. Mol. Biol. Evol. 10:271-281
198 Yang Z (2006) Computational Molecular Evolution. Oxford University Press, Oxford. Eqs. 2.12 & 2.13
200 2 (Pfre186_DNA2) vs. 1 (Pdel181_DNA2)
202 L(i): 923.0 268.5 233.5 sum= 1425.0
203 Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
204 Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
205 A(i): 0.0011 0.0000 0.0000
206 B(i): -0.0000 -0.0000 -0.0000
207 LWL85: dS = 0.0000 dN = 0.0009 w = inf S = 323.0 N = 1102.0
208 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
209 LPB93: dS = 0.0000 dN = 0.0011 w = inf
211 3 (Pgra187_DNA2) vs. 1 (Pdel181_DNA2)
213 L(i): 923.0 269.0 233.0 sum= 1425.0
214 Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
215 Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
216 A(i): 0.0060 0.0056 0.0043
217 B(i): 0.0027 0.0094 -0.0000
218 LWL85: dS = 0.0078 dN = 0.0096 w = 1.2280 S = 322.7 N = 1102.3
219 LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2818 S = 502.0 N = 923.0 (rho = 1.000)
220 LPB93: dS = 0.0050 dN = 0.0102 w = 2.0369
222 3 (Pgra187_DNA2) vs. 2 (Pfre186_DNA2)
224 L(i): 923.0 269.5 232.5 sum= 1425.0
225 Ns(i): 6.5000 1.5000 1.0000 sum= 9.0000
226 Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
227 A(i): 0.0071 0.0056 0.0043
228 B(i): 0.0027 0.0094 -0.0000
229 LWL85: dS = 0.0078 dN = 0.0105 w = 1.3442 S = 322.3 N = 1102.7
230 LWL85m: dS = 0.0050 dN = 0.0126 w = 2.5010 S = 502.0 N = 923.0 (rho = 1.000)
231 LPB93: dS = 0.0050 dN = 0.0113 w = 2.2557
233 4 (Phet26_DNA21) vs. 1 (Pdel181_DNA2)
235 L(i): 922.5 269.0 233.5 sum= 1425.0
236 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
237 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
238 A(i): 0.0016 0.0019 0.0043
239 B(i): 0.0011 0.0037 -0.0000
240 LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
241 LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
242 LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
244 4 (Phet26_DNA21) vs. 2 (Pfre186_DNA2)
246 L(i): 922.5 269.5 233.0 sum= 1425.0
247 Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
248 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
249 A(i): 0.0027 0.0019 0.0043
250 B(i): 0.0011 0.0037 -0.0000
251 LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
252 LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
253 LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
255 4 (Phet26_DNA21) vs. 3 (Pgra187_DNA2)
257 L(i): 922.5 270.0 232.5 sum= 1425.0
258 Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
259 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
260 A(i): 0.0044 0.0037 0.0087
261 B(i): 0.0016 0.0056 -0.0000
262 LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
263 LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
264 LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
266 5 (Pmex37_DNA21) vs. 1 (Pdel181_DNA2)
268 L(i): 923.0 269.0 233.0 sum= 1425.0
269 Ns(i): 2.0000 0.0000 0.0000 sum= 2.0000
270 Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
271 A(i): 0.0022 -0.0000 0.0000
272 B(i): 0.0022 0.0037 -0.0000
273 LWL85: dS = -0.0000 dN = 0.0046 w =-1568.0041 S = 322.7 N = 1102.3
274 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
275 LPB93: dS = -0.0000 dN = 0.0047 w =-2519.1394
277 5 (Pmex37_DNA21) vs. 2 (Pfre186_DNA2)
279 L(i): 923.0 269.5 232.5 sum= 1425.0
280 Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
281 Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
282 A(i): 0.0011 -0.0000 0.0000
283 B(i): 0.0022 0.0037 -0.0000
284 LWL85: dS = -0.0000 dN = 0.0036 w =-1254.3509 S = 322.3 N = 1102.7
285 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
286 LPB93: dS = -0.0000 dN = 0.0036 w =-1938.1612
288 5 (Pmex37_DNA21) vs. 3 (Pgra187_DNA2)
290 L(i): 923.0 270.0 232.0 sum= 1425.0
291 Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
292 Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
293 A(i): 0.0060 0.0056 0.0043
294 B(i): 0.0027 0.0056 -0.0000
295 LWL85: dS = 0.0078 dN = 0.0087 w = 1.1081 S = 322.0 N = 1103.0
296 LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0644 S = 502.0 N = 923.0 (rho = 1.000)
297 LPB93: dS = 0.0050 dN = 0.0094 w = 1.8682
299 5 (Pmex37_DNA21) vs. 4 (Phet26_DNA21)
301 L(i): 922.5 270.0 232.5 sum= 1425.0
302 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
303 Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
304 A(i): 0.0016 0.0019 0.0043
305 B(i): 0.0011 -0.0000 -0.0000
306 LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
307 LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
308 LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
310 6 (Ptre197_DNA2) vs. 1 (Pdel181_DNA2)
312 L(i): 923.0 269.0 233.0 sum= 1425.0
313 Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
314 Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
315 A(i): 0.0060 0.0019 0.0087
316 B(i): 0.0027 0.0056 -0.0000
317 LWL85: dS = 0.0078 dN = 0.0087 w = 1.1111 S = 322.7 N = 1102.3
318 LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0645 S = 502.0 N = 923.0 (rho = 1.000)
319 LPB93: dS = 0.0050 dN = 0.0094 w = 1.8688
321 6 (Ptre197_DNA2) vs. 2 (Pfre186_DNA2)
323 L(i): 923.0 269.5 232.5 sum= 1425.0
324 Ns(i): 6.5000 0.5000 2.0000 sum= 9.0000
325 Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
326 A(i): 0.0071 0.0019 0.0087
327 B(i): 0.0027 0.0056 -0.0000
328 LWL85: dS = 0.0078 dN = 0.0096 w = 1.2275 S = 322.3 N = 1102.7
329 LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2838 S = 502.0 N = 923.0 (rho = 1.000)
330 LPB93: dS = 0.0050 dN = 0.0105 w = 2.0879
332 6 (Ptre197_DNA2) vs. 3 (Pgra187_DNA2)
334 L(i): 923.0 270.0 232.0 sum= 1425.0
335 Ns(i): 0.0000 1.0000 1.0000 sum= 2.0000
336 Nv(i): 0.0000 1.0000 0.0000 sum= 1.0000
337 A(i): 0.0000 0.0037 0.0043
338 B(i): -0.0000 0.0037 -0.0000
339 LWL85: dS = 0.0062 dN = 0.0009 w = 0.1457 S = 322.0 N = 1103.0
340 LWL85m: dS = 0.0040 dN = 0.0011 w = 0.2715 S = 502.0 N = 923.0 (rho = 1.000)
341 LPB93: dS = 0.0040 dN = 0.0008 w = 0.2100
343 6 (Ptre197_DNA2) vs. 4 (Phet26_DNA21)
345 L(i): 922.5 270.0 232.5 sum= 1425.0
346 Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
347 Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
348 A(i): 0.0044 -0.0000 0.0131
349 B(i): 0.0016 0.0019 -0.0000
350 LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
351 LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
352 LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
354 6 (Ptre197_DNA2) vs. 5 (Pmex37_DNA21)
356 L(i): 923.0 270.0 232.0 sum= 1425.0
357 Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
358 Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
359 A(i): 0.0060 0.0019 0.0087
360 B(i): 0.0027 0.0019 -0.0000
361 LWL85: dS = 0.0078 dN = 0.0078 w = 0.9913 S = 322.0 N = 1103.0
362 LWL85m: dS = 0.0050 dN = 0.0093 w = 1.8469 S = 502.0 N = 923.0 (rho = 1.000)
363 LPB93: dS = 0.0050 dN = 0.0085 w = 1.6999
365 7 (WHR1_DNA225) vs. 1 (Pdel181_DNA2)
367 L(i): 923.0 268.5 233.5 sum= 1425.0
368 Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
369 Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
370 A(i): 0.0016 0.0019 0.0086
371 B(i): 0.0027 0.0019 -0.0000
372 LWL85: dS = 0.0078 dN = 0.0041 w = 0.5251 S = 323.0 N = 1102.0
373 LWL85m: dS = 0.0050 dN = 0.0049 w = 0.9743 S = 502.0 N = 923.0 (rho = 1.000)
374 LPB93: dS = 0.0050 dN = 0.0042 w = 0.8280
376 7 (WHR1_DNA225) vs. 2 (Pfre186_DNA2)
378 L(i): 923.0 269.0 233.0 sum= 1425.0
379 Ns(i): 2.5000 0.5000 2.0000 sum= 5.0000
380 Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
381 A(i): 0.0027 0.0019 0.0087
382 B(i): 0.0027 0.0019 -0.0000
383 LWL85: dS = 0.0078 dN = 0.0050 w = 0.6414 S = 322.7 N = 1102.3
384 LWL85m: dS = 0.0050 dN = 0.0060 w = 1.1918 S = 502.0 N = 923.0 (rho = 1.000)
385 LPB93: dS = 0.0050 dN = 0.0052 w = 1.0452
387 7 (WHR1_DNA225) vs. 3 (Pgra187_DNA2)
389 L(i): 923.0 269.5 232.5 sum= 1425.0
390 Ns(i): 4.0000 1.0000 3.0000 sum= 8.0000
391 Nv(i): 2.0000 2.0000 0.0000 sum= 4.0000
392 A(i): 0.0044 0.0037 0.0131
393 B(i): 0.0022 0.0075 -0.0000
394 LWL85: dS = 0.0126 dN = 0.0073 w = 0.5811 S = 322.3 N = 1102.7
395 LWL85m: dS = 0.0081 dN = 0.0087 w = 1.0811 S = 502.0 N = 923.0 (rho = 1.000)
396 LPB93: dS = 0.0081 dN = 0.0077 w = 0.9591
398 7 (WHR1_DNA225) vs. 4 (Phet26_DNA21)
400 L(i): 922.5 269.5 233.0 sum= 1425.0
401 Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
402 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
403 A(i): -0.0000 -0.0000 0.0130
404 B(i): 0.0016 0.0056 -0.0000
405 LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
406 LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
407 LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
409 7 (WHR1_DNA225) vs. 5 (Pmex37_DNA21)
411 L(i): 923.0 269.5 232.5 sum= 1425.0
412 Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
413 Nv(i): 0.5000 1.5000 0.0000 sum= 2.0000
414 A(i): 0.0016 0.0019 0.0087
415 B(i): 0.0005 0.0056 -0.0000
416 LWL85: dS = 0.0078 dN = 0.0032 w = 0.4075 S = 322.3 N = 1102.7
417 LWL85m: dS = 0.0050 dN = 0.0038 w = 0.7582 S = 502.0 N = 923.0 (rho = 1.000)
418 LPB93: dS = 0.0050 dN = 0.0033 w = 0.6602
420 7 (WHR1_DNA225) vs. 6 (Ptre197_DNA2)
422 L(i): 923.0 269.5 232.5 sum= 1425.0
423 Ns(i): 4.0000 0.0000 4.0000 sum= 8.0000
424 Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
425 A(i): 0.0044 -0.0000 0.0175
426 B(i): 0.0022 0.0037 -0.0000
427 LWL85: dS = 0.0126 dN = 0.0064 w = 0.5052 S = 322.3 N = 1102.7
428 LWL85m: dS = 0.0081 dN = 0.0076 w = 0.9400 S = 502.0 N = 923.0 (rho = 1.000)
429 LPB93: dS = 0.0081 dN = 0.0069 w = 0.8491
431 8 (YALD273_DNA5) vs. 1 (Pdel181_DNA2)
433 L(i): 922.5 269.0 233.5 sum= 1425.0
434 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
435 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
436 A(i): 0.0016 0.0019 0.0043
437 B(i): 0.0011 0.0037 -0.0000
438 LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
439 LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
440 LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
442 8 (YALD273_DNA5) vs. 2 (Pfre186_DNA2)
444 L(i): 922.5 269.5 233.0 sum= 1425.0
445 Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
446 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
447 A(i): 0.0027 0.0019 0.0043
448 B(i): 0.0011 0.0037 -0.0000
449 LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
450 LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
451 LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
453 8 (YALD273_DNA5) vs. 3 (Pgra187_DNA2)
455 L(i): 922.5 270.0 232.5 sum= 1425.0
456 Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
457 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
458 A(i): 0.0044 0.0037 0.0087
459 B(i): 0.0016 0.0056 -0.0000
460 LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
461 LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
462 LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
464 8 (YALD273_DNA5) vs. 4 (Phet26_DNA21)
466 L(i): 922.0 270.0 233.0 sum= 1425.0
467 Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
468 Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
469 A(i): 0.0000 0.0000 0.0000
470 B(i): -0.0000 -0.0000 -0.0000
471 LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
472 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
473 LPB93: dS = 0.0000 dN = 0.0000 w = nan
475 8 (YALD273_DNA5) vs. 5 (Pmex37_DNA21)
477 L(i): 922.5 270.0 232.5 sum= 1425.0
478 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
479 Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
480 A(i): 0.0016 0.0019 0.0043
481 B(i): 0.0011 -0.0000 -0.0000
482 LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
483 LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
484 LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
486 8 (YALD273_DNA5) vs. 6 (Ptre197_DNA2)
488 L(i): 922.5 270.0 232.5 sum= 1425.0
489 Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
490 Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
491 A(i): 0.0044 -0.0000 0.0131
492 B(i): 0.0016 0.0019 -0.0000
493 LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
494 LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
495 LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
497 8 (YALD273_DNA5) vs. 7 (WHR1_DNA225)
499 L(i): 922.5 269.5 233.0 sum= 1425.0
500 Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
501 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
502 A(i): -0.0000 -0.0000 0.0130
503 B(i): 0.0016 0.0056 -0.0000
504 LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
505 LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
506 LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
508 9 (Pop_trich_ch) vs. 1 (Pdel181_DNA2)
510 L(i): 922.5 269.0 233.5 sum= 1425.0
511 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
512 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
513 A(i): 0.0016 0.0019 0.0043
514 B(i): 0.0011 0.0037 -0.0000
515 LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
516 LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
517 LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
519 9 (Pop_trich_ch) vs. 2 (Pfre186_DNA2)
521 L(i): 922.5 269.5 233.0 sum= 1425.0
522 Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
523 Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
524 A(i): 0.0027 0.0019 0.0043
525 B(i): 0.0011 0.0037 -0.0000
526 LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
527 LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
528 LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
530 9 (Pop_trich_ch) vs. 3 (Pgra187_DNA2)
532 L(i): 922.5 270.0 232.5 sum= 1425.0
533 Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
534 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
535 A(i): 0.0044 0.0037 0.0087
536 B(i): 0.0016 0.0056 -0.0000
537 LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
538 LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
539 LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
541 9 (Pop_trich_ch) vs. 4 (Phet26_DNA21)
543 L(i): 922.0 270.0 233.0 sum= 1425.0
544 Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
545 Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
546 A(i): 0.0000 0.0000 0.0000
547 B(i): -0.0000 -0.0000 -0.0000
548 LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
549 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
550 LPB93: dS = 0.0000 dN = 0.0000 w = nan
552 9 (Pop_trich_ch) vs. 5 (Pmex37_DNA21)
554 L(i): 922.5 270.0 232.5 sum= 1425.0
555 Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
556 Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
557 A(i): 0.0016 0.0019 0.0043
558 B(i): 0.0011 -0.0000 -0.0000
559 LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
560 LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
561 LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
563 9 (Pop_trich_ch) vs. 6 (Ptre197_DNA2)
565 L(i): 922.5 270.0 232.5 sum= 1425.0
566 Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
567 Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
568 A(i): 0.0044 -0.0000 0.0131
569 B(i): 0.0016 0.0019 -0.0000
570 LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
571 LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
572 LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
574 9 (Pop_trich_ch) vs. 7 (WHR1_DNA225)
576 L(i): 922.5 269.5 233.0 sum= 1425.0
577 Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
578 Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
579 A(i): -0.0000 -0.0000 0.0130
580 B(i): 0.0016 0.0056 -0.0000
581 LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
582 LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
583 LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
585 9 (Pop_trich_ch) vs. 8 (YALD273_DNA5)
587 L(i): 922.0 270.0 233.0 sum= 1425.0
588 Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
589 Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
590 A(i): 0.0000 0.0000 0.0000
591 B(i): -0.0000 -0.0000 -0.0000
592 LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
593 LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
594 LPB93: dS = 0.0000 dN = 0.0000 w = nan