| blob | c3ea71d4a0a72d5b82d6727d62dd1b7e59571086 |
1 LOCUS DDU63596 310 bp DNA INV 14-MAY-1999
2 DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
3 sequence, clone p427/428 right end.
4 ACCESSION U63596
5 NID g2393749
6 KEYWORDS .
7 SOURCE Dictyostelium discoideum.
8 ORGANISM Dictyostelium discoideum
9 Eukaryota; Dictyosteliida; Dictyostelium.
10 REFERENCE 1 (bases 1 to 310)
11 AUTHORS Wells,D.J.
12 TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
13 similar to LTR retroelement integrases
14 JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
15 REFERENCE 2 (bases 1 to 310)
16 AUTHORS Wells,D.J. and Welker,D.L.
17 TITLE Dictyostelium discoideum Tdd-4 transposable element, right end
18 flanking sequence from clone p427/428
19 JOURNAL Unpublished
20 REFERENCE 3 (bases 1 to 310)
21 AUTHORS Wells,D.J. and Welker,D.L.
22 TITLE Direct Submission
23 JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
24 84322-5305, USA
25 FEATURES Location/Qualifiers
26 source 1..310
27 /organism="Dictyostelium discoideum"
28 /strain="AX4"
29 /db_xref="taxon:44689"
30 /clone="p427/428"
31 misc_feature 5.12
32 /note="Fuzzy location"
33 misc_feature join(J00194:(100..202),1..245,256..258)
34 /note="Location partly in another entry"
35 BASE COUNT 118 a 46 c 67 g 79 t
36 ORIGIN
37 1 gtgacagttg gctgtcagac atacaatgat tgtttagaag aggagaagat tgatccggag
38 61 taccgtgata gtattttaaa aactatgaaa gcgggaatac ttaatggtaa actagttaga
39 121 ttatgtgacg tgccaagggg tgtagatgta gaaattgaaa caactggtct aaccgattca
40 181 gaaggagaaa gtgaatcaaa agaagaagag tgatgatgaa tagccaccat tactgcatac
41 241 tgtagccctt acccttgtcg caccattagc cattaataaa aataaaaaat tatataaaaa
42 301 ttacacccat
43 //
44 LOCUS DDU63595 83 bp DNA INV 14-MAY-1999
45 DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
46 sequence, clone p427/428 left end.
47 ACCESSION U63595
48 NID g2393748
49 KEYWORDS .
50 SOURCE Dictyostelium discoideum.
51 ORGANISM Dictyostelium discoideum
52 Eukaryota; Dictyosteliida; Dictyostelium.
53 REFERENCE 1 (bases 1 to 83)
54 AUTHORS Wells,D.J.
55 TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
56 similar to LTR retroelement integrases
57 JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
58 REFERENCE 2 (bases 1 to 83)
59 AUTHORS Wells,D.J. and Welker,D.L.
60 TITLE Dictyostelium discoideum Tdd-4 transposable element, left end
61 flanking sequence from clone p427/428
62 JOURNAL Unpublished
63 REFERENCE 3 (bases 1 to 83)
64 AUTHORS Wells,D.J. and Welker,D.L.
65 TITLE Direct Submission
66 JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
67 84322-5305, USA
68 FEATURES Location/Qualifiers
69 source 1..83
70 /organism="Dictyostelium discoideum"
71 /strain="AX4"
72 /db_xref="taxon:44689"
73 /clone="p427/428"
74 BASE COUNT 31 a 16 c 12 g 24 t
75 ORIGIN
76 1 ttcgaaggat atctcaaggc agttaataat tactatgatg attgtaaaat attccaaagt
77 61 ttcccagacc caccaataat gac
78 //
79 LOCUS HUMBDNF 918 bp DNA PRI 31-OCT-1994
80 DEFINITION Human brain-derived neurotrophic factor (BDNF) gene, complete cds.
81 ACCESSION M37762
82 VERSION M37762.1 GI:179402
83 KEYWORDS neurotrophic factor.
84 SOURCE Human DNA.
85 ORGANISM Homo sapiens
86 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
87 Eutheria; Primates; Catarrhini; Hominidae; Homo.
88 REFERENCE 1 (bases 1 to 918)
89 AUTHORS Jones,K.R. and Reichardt,L.F.
90 TITLE Molecular cloning of a human gene that is a member of the nerve
91 growth factor family
92 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (20), 8060-8064 (1990)
93 MEDLINE 91045937
94 COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad.
95 Sci. U.S.A. (1990) In press] kindly submitted
96 by K.R.Jones, 13-AUG-1990.
97 FEATURES Location/Qualifiers
98 source 1..918
99 /organism="Homo sapiens"
100 /db_xref="taxon:9606"
101 /dev_stage="adult"
102 sig_peptide 76..123
103 /gene="NTF3"
104 /note="G00-125-917; putative"
105 /product="brain-derived neurotrophic factor"
106 CDS 76..819
107 /gene="BDNF"
108 /note="putative"
109 /codon_start=1
110 /db_xref="GDB:G00-125-916"
111 /product="brain-derived neurotrophic factor"
112 /protein_id="AAA51820.1"
113 /db_xref="GI:179403"
114 /translation="MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLE
115 SVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPL
116 EPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMS
117 GGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRAL
118 TMDSKKRIGWRFIRIDTSCVCTLTIKRGR"
119 gene 76..816
120 /gene="NTF3"
121 /map="12p13"
122 gene 76..819
123 /gene="BDNF"
124 /map="11p13"
125 mat_peptide 124..816
126 /gene="NTF3"
127 /note="G00-125-917; putative"
128 /product="brain-derived neurotrophic factor"
129 BASE COUNT 269 a 192 c 237 g 220 t
130 ORIGIN
131 1 ggtgaaagaa agccctaacc agttttctgt cttgtttctg ctttctccct acagttccac
132 61 caggtgagaa gagtgatgac catccttttc cttactatgg ttatttcata ctttggttgc
133 121 atgaaggctg cccccatgaa agaagcaaac atccgaggac aaggtggctt ggcctaccca
134 181 ggtgtgcgga cccatgggac tctggagagc gtgaatgggc ccaaggcagg ttcaagaggc
135 241 ttgacatcat tggctgacac tttcgaacac gtgatagaag agctgttgga tgaggaccag
136 301 aaagttcggc ccaatgaaga aaacaataag gacgcagact tgtacacgtc cagggtgatg
137 361 ctcagtagtc aagtgccttt ggagcctcct cttctctttc tgctggagga atacaaaaat
138 421 tacctagatg ctgcaaacat gtccatgagg gtccggcgcc actctgaccc tgcccgccga
139 481 ggggagctga gcgtgtgtga cagtattagt gagtgggtaa cggcggcaga caaaaagact
140 541 gcagtggaca tgtcgggcgg gacggtcaca gtccttgaaa aggtccctgt atcaaaaggc
141 601 caactgaagc aatacttcta cgagaccaag tgcaatccca tgggttacac aaaagaaggc
142 661 tgcaggggca tagacaaaag gcattggaac tcccagtgcc gaactaccca gtcgtacgtg
143 721 cgggccctta ccatggatag caaaaagaga attggctggc gattcataag gatagacact
144 781 tcttgtgtat gtacattgac cattaaaagg ggaagatagt ggatttatgt tgtatagatt
145 841 agattatatt gagacaaaaa ttatctattt gtatatatac ataacagggt aaattattca
146 901 gttaagaaaa aaataatt
147 //
148 LOCUS NT_010368 161485 bp DNA CON 16-NOV-2000
149 DEFINITION Homo sapiens chromosome 15 working draft sequence segment, complete
150 sequence.
151 ACCESSION NT_010368
152 VERSION NT_010368.1 GI:11433101
153 KEYWORDS HTG.
154 SOURCE human.
155 ORGANISM Homo sapiens
156 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
157 Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
158 REFERENCE 1 (bases 1 to 161485)
159 AUTHORS International Human Genome Project collaborators.
160 TITLE Toward the complete sequence of the human genome
161 JOURNAL Unpublished
162 COMMENT GENOME ANNOTATION REFSEQ: NCBI contigs are derived from assembled
163 genomic sequence data. They may include both draft and finished
164 sequence.
165 COMPLETENESS: not full length.
166 FEATURES Location/Qualifiers
167 source 1..310
168 /organism="Homo sapiens"
169 /db_xref="taxon:9606"
170 /chromosome="15"
171 source order(1..100,251..300,300..310)
172 /note="Doctored from Accession AC011224
173 sequenced by Whitehead Institute
174 for Biomedical Research"
175 /organism="Homo sapiens"
176 /db_xref="taxon:9606"
177 /clone="RP11-10K20"
178 variation 244
179 /replace="T"
180 /replace="A"
181 /db_xref="dbSNP:140670"
182 ORIGIN
183 1 gtgacagttg gctgtcagac atacaatgat tgtttagaag aggagaagat tgatccggag
184 61 taccgtgata gtattttaaa aactatgaaa gcgggaatac ttaatggtaa actagttaga
185 121 ttatgtgacg tgccaagggg tgtagatgta gaaattgaaa caactggtct aaccgattca
186 181 gaaggagaaa gtgaatcaaa agaagaagag tgatgatgaa tagccaccat tactgcatac
187 241 tgtagccctt acccttgtcg caccattagc cattaataaa aataaaaaat tatataaaaa
188 301 ttacacccat
189 //
190 LOCUS HUMBETGLOA 3002 bp DNA linear PRI 26-AUG-1994
191 DEFINITION Human haplotype C4 beta-globin gene, complete cds.
192 ACCESSION L26462
193 VERSION L26462.1 GI:432453
194 KEYWORDS beta-globin.
195 SOURCE Homo sapiens DNA.
196 ORGANISM Homo sapiens
197 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
198 Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
199 REFERENCE 1 (bases 1 to 3002)
200 AUTHORS Fullerton,S.M., Harding,R.M., Boyce,A.J. and Clegg,J.B.
201 TITLE Molecular and population genetic analysis of allelic sequence
202 diversity at the human beta-globin locus
203 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (5), 1805-1809 (1994)
204 MEDLINE 94173918
205 PUBMED 7907422
206 FEATURES Location/Qualifiers
207 source 1..3002
208 /organism="Homo sapiens"
209 /db_xref="taxon:9606"
210 /haplotype="C4"
211 /note="sequence found in a Melanesian population"
212 variation 111
213 /replace="t"
214 variation 263
215 /note="Rsa I polymorphism"
216 /replace="t"
217 variation 273
218 /replace="c"
219 variation 286..287
220 /note="2 bp insertion of AT"
221 /replace=""
222 variation 288
223 /replace="t"
224 variation 295..296
225 /note="1 bp deletion of C or 2 bp deletion of CT"
226 /replace=""
227 variation 347
228 /replace="c"
229 variation 476
230 /replace="t"
231 variation 500
232 /replace="c"
233 CDS join(866..957,1088..1310,2161..2289)
234 /codon_start=1
235 /product="beta-globin"
236 /protein_id="AAA21100.1"
237 /db_xref="GI:532506"
238 /translation="MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFE
239 SFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPE
240 NFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH"
241 exon <866..957
242 /number=1
243 variation 874
244 /replace="c"
245 intron 958..1087
246 /number=1
247 exon 1088..1310
248 /number=2
249 intron 1311..2160
250 /number=2
251 variation 1326
252 /note="Ava II polymorphism"
253 /replace="g"
254 variation 1384
255 /replace="g"
256 variation 1391
257 /replace="t"
258 variation 1976
259 /replace="t"
260 exon 2161..>2289
261 /number=3
262 variation 2522
263 /replace="c"
264 variation 2602
265 /replace="a"
266 variation 2604
267 /replace="c"
268 variation 2760
269 /note="Hinf I polymorphism"
270 /replace="t"
271 variation 2913
272 /replace="g"
273 BASE COUNT 810 a 601 c 599 g 992 t
274 ORIGIN
275 1 acctcctatt tgacaccact gattacccca ttgatagtca cactttgggt tgtaagtgac
276 61 tttttattta tttgtatttt tgactgcatt aagaggtctc tagtttttta cctcttgttt
277 121 cccaaaacct aataagtaac taatgcacag agcacattga tttgtattta ttctattttt
278 181 agacataatt tattagcatg catgagcaaa ttaagaaaaa caacaacaaa tgaatgcata
279 241 tatatgtata tgtatgtgtg tacatataca catatatata tatatatatt ttttcttttc
280 301 ttaccagaag gttttaatcc aaataaggag aagatatgct tagaactgag gtagagtttt
281 361 catccattct gtcctgtaag tattttgcat attctggaga cgcaggaaga gatccatcta
282 421 catatcccaa agctgaatta tggtagacaa aactcttcca cttttagtgc atcaacttct
283 481 tatttgtgta ataagaaaat tgggaaaacg atcttcaata tgcttaccaa gctgtgattc
284 541 caaatattac gtaaatacac ttgcaaagga ggatgttttt agtagcaatt tgtactgatg
285 601 gtatggggcc aagagatata tcttagaggg agggctgagg gtttgaagtc caactcctaa
286 661 gccagtgcca gaagagccaa ggacaggtac ggctgtcatc acttagacct caccctgtgg
287 721 agccacaccc tagggttggc caatctactc ccaggagcag ggagggcagg agccagggct
288 781 gggcataaaa gtcagggcag agccatctat tgcttacatt tgcttctgac acaactgtgt
289 841 tcactagcaa cctcaaacag acaccatggt gcatctgact cctgaggaga agtctgccgt
290 901 tactgccctg tggggcaagg tgaacgtgga tgaagttggt ggtgaggccc tgggcaggtt
291 961 ggtatcaagg ttacaagaca ggtttaagga gaccaataga aactgggcat gtggagacag
292 1021 agaagactct tgggtttctg ataggcactg actctctctg cctattggtc tattttccca
293 1081 cccttaggct gctggtggtc tacccttgga cccagaggtt ctttgagtcc tttggggatc
294 1141 tgtccactcc tgatgctgtt atgggcaacc ctaaggtgaa ggctcatggc aagaaagtgc
295 1201 tcggtgcctt tagtgatggc ctggctcacc tggacaacct caagggcacc tttgccacac
296 1261 tgagtgagct gcactgtgac aagctgcacg tggatcctga gaacttcagg gtgagtctat
297 1321 gggacccttg atgttttctt tccccttctt ttctatggtt aagttcatgt cataggaagg
298 1381 ggataagtaa cagggtacag tttagaatgg gaaacagacg aatgattgca tcagtgtgga
299 1441 agtctcagga tcgttttagt ttcttttatt tgctgttcat aacaattgtt ttcttttgtt
300 1501 taattcttgc tttctttttt tttcttctcc gcaattttta ctattatact taatgcctta
301 1561 acattgtgta taacaaaagg aaatatctct gagatacatt aagtaactta aaaaaaaact
302 1621 ttacacagtc tgcctagtac attactattt ggaatatatg tgtgcttatt tgcatattca
303 1681 taatctccct actttatttt cttttatttt taattgatac ataatcatta tacatattta
304 1741 tgggttaaag tgtaatgttt taatatgtgt acacatattg accaaatcag ggtaattttg
305 1801 catttgtaat tttaaaaaat gctttcttct tttaatatac ttttttgttt atcttatttc
306 1861 taatactttc cctaatctct ttctttcagg gcaataatga tacaatgtat catgcctctt
307 1921 tgcaccattc taaagaataa cagtgataat ttctgggtta aggcaatagc aatatctctg
308 1981 catataaata tttctgcata taaattgtaa ctgatgtaag aggtttcata ttgctaatag
309 2041 cagctacaat ccagctacca ttctgctttt attttatggt tgggataagg ctggattatt
310 2101 ctgagtccaa gctaggccct tttgctaatc atgttcatac ctcttatctt cctcccacag
311 2161 ctcctgggca acgtgctggt ctgtgtgctg gcccatcact ttggcaaaga attcacccca
312 2221 ccagtgcagg ctgcctatca gaaagtggtg gctggtgtgg ctaatgccct ggcccacaag
313 2281 tatcactaag ctcgctttct tgctgtccaa tttctattaa aggttccttt gttccctaag
314 2341 tccaactact aaactggggg atattatgaa gggccttgag catctggatt ctgcctaata
315 2401 aaaaacattt attttcattg caatgatgta tttaaattat ttctgaatat tttactaaaa
316 2461 agggaatgtg ggaggtcagt gcatttaaaa cataaagaaa tgaagagcta gttcaaacct
317 2521 tgggaaaata cactatatct taaactccat gaaagaaggt gaggctgcaa acagctaatg
318 2581 cacattggca acagccctga tgcatatgcc ttattcatcc ctcagaaaag gattcaagta
319 2641 gaggcttgat ttggaggtta aagttttgct atgctgtatt ttacattact tattgtttta
320 2701 gctgtcctca tgaatgtctt ttcactaccc atttgcttat cctgcatctc tcagccttga
321 2761 ctccactcag ttctcttgct tagagatacc acctttcccc tgaagtgttc cttccatgtt
322 2821 ttacggcgag atggtttctc ctcgcctggc cactcagcct tagttgtctc tgttgtctta
323 2881 tagaggtcta cttgaagaag gaaaaacagg ggtcatggtt tgactgtcct gtgagccctt
324 2941 cttccctgcc tcccccactc acagtgaccc ggaatctgca gtgctagtct cccggaacta
325 3001 tc
326 //