| blob | be5d4ea730b32736b854d479b2c3a5e3b22e3835 |
1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <!-- this is a simple test file generated from a NEXUS file -->
3 <otus id="otus1">
4 <otu id="otu2" label="otuA"/>
5 <otu id="otu3" label="otuB"/>
6 <otu id="otu4" label="otuC"/>
7 <otu id="otu5" label="otuD"/>
8 <otu id="otu6" label="otuE"/>
9 <otu id="otu7" label="otuF"/>
10 </otus>
11 <trees id="trees16" otus="otus1">
12 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
13 <node id="node19" label="inodeABCDEF" root="true" about="uniquely_this_node19">
14 <meta property="cdao:has_Datum">
15 <meta typeof="cdao:CharacterStateDatum" rel="cdao:has_State" resource="#s1"/>
16 </meta>
17 </node>
18 <node id="node20" label="otuA" otu="otu2"/>
19 <node id="node21" label="inodeBCDEF" about="uniquely_this_node21">
20 <meta property="cdao:has_Datum">
21 <meta typeof="cdao:CharacterStateDatum" rel="cdao:has_State" resource="#s1"/>
22 </meta>
23 </node>
24 <node id="node22" label="inodeBCD" about="uniquely_this_node22">
25 <meta property="cdao:has_Datum">
26 <meta typeof="cdao:CharacterStateDatum" rel="cdao:has_State" resource="#s1"/>
27 </meta>
28 </node>
29 <node id="node27" label="inodeEF" about="uniquely_this_node27">
30 <meta property="cdao:has_Datum">
31 <meta typeof="cdao:CharacterStateDatum" rel="cdao:has_State" resource="#s3"/>
32 </meta>
33 </node>
34 <node id="node23" label="inodeBC" about="uniquely_this_node23">
35 <meta property="cdao:has_Datum">
36 <meta typeof="cdao:CharacterStateDatum" rel="cdao:has_State" resource="#s1"/>
37 </meta>
38 </node>
39 <node id="node26" label="otuD" otu="otu5"/>
40 <node id="node28" label="otuE" otu="otu6"/>
41 <node id="node29" label="otuF" otu="otu7"/>
42 <node id="node24" label="otuB" otu="otu3"/>
43 <node id="node25" label="otuC" otu="otu4"/>
44 <edge id="edge20" length="4" source="node19" target="node20"/>
45 <edge id="edge21" length="1" source="node19" target="node21"/>
46 <edge id="edge22" length="1" source="node21" target="node22"/>
47 <edge id="edge27" length="2" source="node21" target="node27"/>
48 <edge id="edge23" length="1" source="node22" target="node23"/>
49 <edge id="edge26" length="2" source="node22" target="node26"/>
50 <edge id="edge28" length="1" source="node27" target="node28"/>
51 <edge id="edge29" length="1" source="node27" target="node29"/>
52 <edge id="edge24" length="1" source="node23" target="node24"/>
53 <edge id="edge25" length="1" source="node23" target="node25"/>
54 </tree>
55 </trees>
56 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
57 <format>
58 <states id="states10">
59 <state id="s1" symbol="0"/>
60 <state id="s2" symbol="1"/>
61 <state id="s3" symbol="2"/>
62 <state id="s4" symbol="3"/>
63 <state id="s5" symbol="4"/>
64 <state id="s6" symbol="5"/>
65 <state id="s7" symbol="6"/>
66 <state id="s8" symbol="7"/>
67 <state id="s9" symbol="8"/>
68 <state id="s10" symbol="9"/>
69 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
70 <uncertain_state_set id="s12" symbol="?">
71 <member state="s1"/>
72 <member state="s2"/>
73 <member state="s3"/>
74 <member state="s4"/>
75 <member state="s5"/>
76 <member state="s6"/>
77 <member state="s7"/>
78 <member state="s8"/>
79 <member state="s9"/>
80 <member state="s10"/>
81 <member state="s11"/>
82 </uncertain_state_set>
83 </states>
84 <char id="c1" states="states10"/>
85 </format>
86 <matrix>
87 <row id="row9" label="otuA" otu="otu2">
88 <cell char="c1" state="s1"/>
89 </row>
90 <row id="row11" label="otuB" otu="otu3">
91 <cell char="c1" state="s3"/>
92 </row>
93 <row id="row12" label="otuC" otu="otu4">
94 <cell char="c1" state="s3"/>
95 </row>
96 <row id="row13" label="otuD" otu="otu5">
97 <cell char="c1" state="s1"/>
98 </row>
99 <row id="row14" label="otuE" otu="otu6">
100 <cell char="c1" state="s2"/>
101 </row>
102 <row id="row15" label="otuF" otu="otu7">
103 <cell char="c1" state="s1"/>
104 </row>
105 </matrix>
106 </characters>
107 </nex:nexml>