| blob | 9ff918c22e8724c87bf46a2b731a88e03544a027 |
1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <otus id="otus1">
3 <otu id="otu2" label="S. acanthias"/> <!-- Squalus acanthias, spiny dogfish, NCBI 7797 -->
4 <otu id="otu3" label="S. glaucus"/> <!-- Squalus glaucus, http://www.zoobank.org/?lsid=urn:lsid:zoobank.org:act:A6AD1B85-C65C-4079-B425-56828418620C -->
5 <otu id="otu4" label="S. cubensis"/> <!-- Cuban dogfish, NCBI 134995 -->
6 <otu id="otu5" label="S. megalops"/> <!-- dogfish, NCBI 335062 -->
7 <otu id="otu6" label="S. grahami"/> <!-- dogfish, NCBI 335029 -->
8 <otu id="otu7" label="S. brevirostris"/> <!-- dogfish, NCBI 436290 -->
9 </otus>
10 <trees id="trees16" otus="otus1">
11 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
12 <node id="node19" root="true"/>
13 <node id="node20" label="S. acanthias" otu="otu2"/>
14 <node id="node21"/>
15 <node id="node22"/>
16 <node id="node27"/>
17 <node id="node23"/>
18 <node id="node26" label="S. megalops" otu="otu5"/>
19 <node id="node28" label="S. grahami" otu="otu6"/>
20 <node id="node29" label="S. brevirostris" otu="otu7"/>
21 <node id="node24" label="S. glaucus" otu="otu3"/>
22 <node id="node25" label="S. cubensis" otu="otu4"/>
23 <edge id="edge20" length="4" source="node19" target="node20"/>
24 <edge id="edge21" length="1" source="node19" target="node21"/>
25 <edge id="edge22" length="1" source="node21" target="node22"/>
26 <edge id="edge27" length="2" source="node21" target="node27"/>
27 <edge id="edge23" length="1" source="node22" target="node23"/>
28 <edge id="edge26" length="2" source="node22" target="node26"/>
29 <edge id="edge28" length="1" source="node27" target="node28"/>
30 <edge id="edge29" length="1" source="node27" target="node29"/>
31 <edge id="edge24" length="1" source="node23" target="node24"/>
32 <edge id="edge25" length="1" source="node23" target="node25"/>
33 </tree>
34 </trees>
35 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
36 <format>
37 <states id="states10">
38 <state id="s1" symbol="0"/>
39 <state id="s2" symbol="1"/>
40 <state id="s3" symbol="2"/>
41 <state id="s4" symbol="3"/>
42 <state id="s5" symbol="4"/>
43 <state id="s6" symbol="5"/>
44 <state id="s7" symbol="6"/>
45 <state id="s8" symbol="7"/>
46 <state id="s9" symbol="8"/>
47 <state id="s10" symbol="9"/>
48 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
49 <uncertain_state_set id="s12" symbol="?">
50 <member state="s1"/>
51 <member state="s2"/>
52 <member state="s3"/>
53 <member state="s4"/>
54 <member state="s5"/>
55 <member state="s6"/>
56 <member state="s7"/>
57 <member state="s8"/>
58 <member state="s9"/>
59 <member state="s10"/>
60 <member state="s11"/>
61 </uncertain_state_set>
62 </states>
63 <char id="c1" states="states10"/>
64 </format>
65 <matrix>
66 <row id="row9" label="S. acanthias" otu="otu2">
67 <cell char="c1" state="s1"/>
68 </row>
69 <row id="row11" label="S. glaucus" otu="otu3">
70 <cell char="c1" state="s3"/>
71 </row>
72 <row id="row12" label="S. cubensis" otu="otu4">
73 <cell char="c1" state="s3"/>
74 </row>
75 <row id="row13" label="S. megalops" otu="otu5">
76 <cell char="c1" state="s1"/>
77 </row>
78 <row id="row14" label="S. grahami" otu="otu6">
79 <cell char="c1" state="s2"/>
80 </row>
81 <row id="row15" label="S. brevirostris" otu="otu7">
82 <cell char="c1" state="s1"/>
83 </row>
84 </matrix>
85 </characters>
86 </nex:nexml>