branch-1-6/t/data/transfac.dat

   1 VV  TRANSFAC MATRIX TABLE, Release 6.4 - licensed - 2002-12-02, (C) Biobase GmbH
   2 XX
   3 //
   4 AC  M00001
   5 XX
   6 ID  V$MYOD_01
   7 XX
   8 DT  19.10.1992 (created); ewi.
   9 DT  22.10.1997 (updated); dbo.
  10 CO  Copyright (C), Biobase GmbH.
  11 XX
  12 NA  MyoD
  13 XX
  14 DE  myoblast determination gene product
  15 XX
  16 BF  T00526; MyoD; Species: mouse, Mus musculus.
  17 XX
  18 P0      A      C      G      T
  19 01      1      2      2      0      S
  20 02      2      1      2      0      R
  21 03      3      0      1      1      A
  22 04      0      5      0      0      C
  23 05      5      0      0      0      A
  24 06      0      0      4      1      G
  25 07      0      1      4      0      G
  26 08      0      0      0      5      T
  27 09      0      0      5      0      G
  28 10      0      1      2      2      K
  29 11      0      2      0      3      Y
  30 12      1      0      3      1      G
  31 XX
  32 BA  5 functional elements in 3 genes
  33 XX
  34 CC  no comment
  35 XX
  36 //
  37 AC  M00002
  38 XX
  39 ID  V$E47_01
  40 XX
  41 DT  19.10.1992 (created); ewi.
  42 DT  18.07.2000 (updated); ewi.
  43 CO  Copyright (C), Biobase GmbH.
  44 XX
  45 NA  E47
  46 XX
  47 DE  E47
  48 XX
  49 BF  T00207; E47; Species: human, Homo sapiens.
  50 XX
  51 P0      A      C      G      T
  52 01      4      4      3      0      V
  53 02      2      5      4      0      S
  54 03      3      2      4      2      N
  55 04      2      0      9      0      G
  56 05      0     11      0      0      C
  57 06     11      0      0      0      A
  58 07      0      0     11      0      G
  59 08      1      2      8      0      G
  60 09      0      0      0     11      T
  61 10      0      0     11      0      G
  62 11      0      0      4      7      K
  63 12      1      4      3      3      N
  64 13      1      6      2      2      C
  65 14      1      4      4      2      N
  66 15      1      4      2      3      N
  67 XX
  68 BA  11 selected strong binding sites for E47, E47-MyoD, E12+MyoD and (weak) for
  69 BA  E12
  70 XX
  71 BS  R05108; Start: 3; Length: 15; Gaps: 17; Orientation: p.
  72 BS  R05109; Start: 1; Length: 15; Gaps:; Orientation: p.
  73 BS  R05110; Start: 5; Length: 15; Gaps:; Orientation: p.
  74 BS  R05111; Start: 5; Length: 15; Gaps:; Orientation: p.
  75 BS  R05112; Start: 8; Length: 15; Gaps:; Orientation: p.
  76 BS  R05113; Start: 9; Length: 15; Gaps:; Orientation: p.
  77 BS  R05114; Start: 8; Length: 15; Gaps:; Orientation: p.
  78 BS  R05115; Start: 7; Length: 15; Gaps:; Orientation: p.
  79 BS  R05116; Start: 11; Length: 15; Gaps:; Orientation: p.
  80 BS  R05117; Start: 5; Length: 15; Gaps:; Orientation: p.
  81 BS  R05118; Start: 5; Length: 15; Gaps:; Orientation: p.
  82 XX
  83