branch-1-6/t/data/testaln2.fasta

   1 >AK1H_ECOLI/114-431 DESCRIPTION HERE
   2 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
   3 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
   4 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
   5 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
   6 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
   7 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
   8 ---FAALARANINIVAIA
   9 >AK1H_ECOLI_dup1 DESCRIPTION HERE
  10 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
  11 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
  12 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
  13 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
  14 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
  15 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
  16 ---FAALARANINIVAIA
  17 >AK1H_ECOLI_dup2 DESCRIPTION HERE
  18 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
  19 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
  20 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
  21 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
  22 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
  23 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
  24 ---FAALARANINIVAIA
  25 >AK1H_ECOLI_dup3_head_gap DESCRIPTION HERE
  26 ---SINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
  27 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
  28 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
  29 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
  30 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
  31 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
  32 ---FAALARANINIV---
  33 >AK1H_ECOLI_dup4_end_gap DESCRIPTION HERE
  34 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE
  35 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD
  36 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH
  37 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------
  38 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS
  39 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF---
  40 ---FAALARANINIV---
  41 >AKH_HAEIN 114-431
  42 -----------------VEDAVKATIDCRGEKLSIAMMKAWFEARGY-S--VHIVDPVKQ
  43 LLAKG-GYLESSVEIEESTKRVDAANIA--K-DKVVLMAGF---TAGNEKGELVLLGRNG
  44 SDYSAAC-----------------LAACLGASVCEIWTDVDGVYTCDP--RLVPDARLLP
  45 TLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSI-ID--GNVKSESL
  46 Q----VKGITNLDNLAMFNVSGPGMQGM---VGMASRVFSAMSGAGISVILITQSSSEYS
  47 ---ISFCVPVKSAEVAKTVLETEFA-----NELNEHQLEPIEVIKDLSIISV-VGDGMKQ
  48 AKGIAARF------FSALAQANISIVAIA
  49 >AKH1_MAIZE/117-440
  50 -----------------ATESFSDFVVGHGELWSAQMLSYAIQKSGT-P--CSWMDTREV
  51 LVVNPSGANQVDPDYLESEKRLEKWFSRC-P-AETIIATGF---IASTPENIPTTLKRDG
  52 SDFSAAI-----------------IGSLVKARQVTIWTDVDGVFSADP--RKVSEAVILS
  53 TLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNTSAPGTM-IC--QQPANENG
  54 DLEACVKAFATIDKLALVNVEGTGMAGV---PGTANAIFGAVKDVGANVIMISQASSEHS
  55 ---VCFAVPEKEVALVSAALHARFR-----EALAAGRLSKVEVIHNCSILAT-VGLRMAS
  56 TPGVSATL------FDALAKANINVRAIA
  57 >AK2H_ECOLI/112-431
  58 -----------------INDAVYAEVVGHGEVWSARLMSAVLNQQG-----LPAAWLDAR
  59 EFLRAERAAQPQVDEGLSYPLLQQLLVQH-P-GKRLVVTGF---ISRNNAGETVLLGRNG
  60 SDYSATQ-----------------IGALAGVSRVTIWSDVAGVYSADP--RKVKDACLLP
  61 LLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLASGTGARI
  62 VTSHDDVCLI-EFQVPASQDFKLAHKEI--DQILKRAQVRPLAVGVHNDRQLLQFCYTSE
  63 VADSALKILDEAG---------LPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQ
  64 PVEFTWQSDDGISLVAVL
  65 >AK1_BACSU/66-374
  66 -----------------ISPREQDLLLSCGETISSVVFTSMLLDNGVKA--AALTGAQAG
  67 FLTNDQHTNAKIIEMKPER--LFSVLAN----HDAVVVAGF---QGATEKGDTTTIGRGG
  68 SDTSAAA-----------------LGAAVDAEYIDIFTDVEGVMTADP--RVVENAKPLP
  69 VVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYS-NDKGTLVTSHHSSKVGSDV
  70 FERLITGIAH-VKDVTQFKVPAKIGQYN-----VQTEVFKAMANAGISVDFFNITPSEIV
  71 YTVAGNKTETAQR------------ILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVTSKI
  72 ------VSALSEKEIPILQSA
  73 >AK2_BACST/63-370
  74 -----------------KRE--MDMLLSTGEQVSIALLAMSLHEKGYKA--VSLTGWQAG
  75 ITTEEMHGNARIMNIDTT--RIRRCLDE----GAIVIVAGF---QGVTETGEITTLGRGG
  76 SDTTAVA-----------------LAAALKAEKCDIYTDVTGVFTTDP--RYVKTARKIK
  77 EISYDEMLELANLGAGVLHPRAVEFAKNYEVPLEVRSSME-NERGTMVK--EEVSMEQHL
  78 IVRGIAFEDQ-VTRVTVVGIEKYLQSVA--------TIFTALANRGINVDIIIQNA----
  79 ----------------TNSETAS--VSFSIRTEDLPETLQVLQ-------------ALEG
  80 ADVHYESGLAKVSI-VGSGMISNPGVAARV------FEVLADQGIEIKMVS
  81 >AK2_BACSU/63-373
  82 -----------------KRE--MDMLLATGEQVTISLLSMALQEKGYDA--VSYTGWQAG
  83 IRTEAIHGNARITDIDTS--VLADQLEK----GKIVIVAGF---QGMTEDCEITTLGRGG
  84 SDTTAVA-----------------LAAALKVDKCDIYTDVPGVFTTDP--RYVKSARKLE
  85 GISYDEMLELANLGAGVLHPRAVEFAKNYQVPLEVRSSTE-TEAGTLIE--EESSMEQNL
  86 IVRGIAFEDQ-ITRVTIYGLTSGLTTLS--------TIFTTLAKRNINVDIIIQTQ----
  87 ----------------AEDKTG---ISFSVKTEDADQTVAVLEEYK---------DALEF
  88 EKIETESKLAKVSI-VGSGMVSNPGVAAEM------FAVLAQKNILIKMVS
  89 >AKAB_CORFL/63-379
  90 -----------------ARE--MDMLLTAGERISNALVAMAIESLGAEA--QSFTGSQAG
  91 VLTTERHGNARIVDVTPG--RVREALDE----GKICIVAGF--QGVNKETRDVTTLGRGG
  92 SDTTAVA-----------------LAAALNADVCEIYSDVDGVYTADP--RIVPNAQKLE
  93 KLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSMEDIPVEEA
  94 VLTGVATDKS-EAKVTVLGISDKPGEAA--------KVFRALADAEINIDMVLQNV----
  95 ----------------SSVEDGTTDITFTCPRADGRRAMEILKKLQ---------VQGNW
  96 TNVLYDDQVDKVSL-VGAGMKSHPGVTAEF------MEALRDVNVNIELIS
  97 >AKAB_MYCSM/63-379
  98 -----------------PRE--MDMLLTAGERISNALVAMAIESLGAQA--RSFTGSQAG
  99 VITTGTHGNAKIIDVTPG--RLRDALDE----GQIVLVAGF--QGVSQDSKDVTTLGRGG
 100 SDTTAVA-----------------VAAALDADVCEIYTDVDGIFTADP--RIVPNARHLD
 101 TVSFEEMLEMAACGAKVLMLRCVEYARRYNVPIHVRSSYS-DKPGTIVKGSIEDIPMEDA
 102 ILTGVAHDRS-EAKVTVVGLPDVPGYAA--------KVFRAVAEADVNIDMVLQNI----
 103 ----------------SKIEDGKTDITFTCARDNGPRAVEKLSALK---------SEIGF
 104 SQVLYDDHIGKVSL-IGAGMRSHPGVTATF------CEALAEAGINIDLIS
 105 >AK3_ECOLI/106-407
 106 -----------------TSPALTDELVSHGELMSTLLFVEILRERD--V--QAQWFDVRK
 107 VMRTNDRFGRAEPDIAALAELAALQLLPR-LNEGLVITQGF---IGSENKGRTTTLGRGG
 108 SDYTAAL-----------------LAEALHASRVDIWTDVPGIYTTDP--RVVSAAKRID
 109 EIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRA
 110 LAL--RRNQT-LLTLHSLNMLHSRGFLA--------EVFGILARHNISVDLITTSEVSVA
 111 LTLDTTGSTSTG----------DTLLTQSLLMELSALCRVEVEEGLALVALIG-------
 112 ---NDLSKACGVGKEVF
 113 >AK_YEAST/134-472 A COMMENT FOR YEAST
 114 -----------------VSSRTVDLVMSCGEKLSCLFMTALCNDRGCKAKYVDLSHIVPS
 115 DFSASALDNSFYTFLVQALKEKLAPFVSA-KERIVPVFTGF---FGLVPTGLLNGVGRGY
 116 TDLCAAL-----------------IAVAVNADELQVWKEVDGIFTADP--RKVPEARLLD
 117 SVTPEEASELTYYGSEVIHPFTMEQVIRAKIPIRIKNVQNPLGNGTIIYPDNVAKKGEST
 118 PPHPPENLSS----SFYEKRKRGATAITTKN----DIFVINIHSNKKTLSHGFLAQIFTI
 119 LDKYKLVVDLISTSEVHVSMALPIPDADS-LKSLRQAEEKLRILGSVDITKKLSIVSLVG
 120 KHMKQYIGIAG---TMFTTLAEEGINIEMIS