branch-1-6/t/data/test.tigrxml

   1 <ASSEMBLY ASMBL_ID = "162" COORDS = "1-1178688">
   2         <HEADER>
   3                 <CLONE_NAME>chr9</CLONE_NAME>
   4                 <ORGANISM>Cryptococcus neoformans</ORGANISM>
   5                 <AUTHOR_LIST CONTACT = "">
   6                 </AUTHOR_LIST>
   7         </HEADER>
   8         <TU FEAT_NAME = "162.t00500" LOCUS = "" PUB_LOCUS = "" ALT_LOCUS = "" COM_NAME = "hypothetical protein" PUB_COMMENT = "" COORDS = "185408-187155">
   9                 <MODEL FEAT_NAME = "162.m02638" COMMENT = "" COORDS = "185794-187041">
  10                         <PROTEIN_SEQ>MSAHSGSCIPSTSCPSSTVSINGTCVTCPLDCATCSTASTCSTCPSDRPILKNGRCIAYCATDTYYDTSTGTCQACDWTCKNCVGEGSAMCSSCSDGYMLKDGVCVDALCGDAGFANGFGMCFSSFVHKSQKRYLGLLALVGVAIIAGIASWWYVRRERRKTRQATKEFGKRLDERNVNDRLSALRLEKVFGFNRVTFGRGGDRSARTTQEDGGKKNKLRELLLPSKRRSGNEEMEMKKSNFAPDKERDCYDSWRTSNFGKDNWVAPPPYVPSQGVPTPVDVKHTFNKRDSLDSIPTPSHQTFAPSSSTSSFTITRPATPPRKLQNPYLGSTIIHSMSTPSPPPHSRSLMPPPRPGMGRRESGNSFSSGSLWTPMTGMTSITKITADKERDVRRYSGRQDRQMDVERRPTDYDLL*</PROTEIN_SEQ>
  11                         <EXON FEAT_NAME = "162.e11999" COORDS = "185408-185433">
  12                         </EXON>
  13                         <EXON FEAT_NAME = "162.e12000" COORDS = "185487-187155">
  14                                 <CDS FEAT_NAME = "162.c02494" COORDS = "185794-187041"/>
  15                         </EXON>
  16                 </MODEL>
  17         </TU>
  18         <TU FEAT_NAME = "162.t00448" LOCUS = "" PUB_LOCUS = "" ALT_LOCUS = "" COM_NAME = "eukaryotic translation initiation factor 2 alpha subunit (eif-2- alpha). (fission yeast" PUB_COMMENT = "" COORDS = "61061-59343">
  19                 <MODEL FEAT_NAME = "162.m02967" COMMENT = "" COORDS = "60833-59633">
  20                         <PROTEIN_SEQ>MPRFYENKYPEVDQLVMVQVQSIEDMGAYVKLLEYDNIEGMILLSELSRRRIRSVQKLIRVGRNEVVVVMRVDPDKGYIDLSKRRVSAEEVVKCEEQYEKGKAVDSIITQVAKKRGVTPESLYEKIAWPLHRQYGHAYEAFKLSISEPEAVFGSLELDEETLADLRSGIARRLTPKPVKVRADIEVKCFSYAGIDAIKRALTAGEAVSTPDVPIKVRLVAPPLYVMSTTSTDKNAAIELMEKAVEVIGETVRKDKGDITIKMKPKVVSETEDAELKALMEQFEAANMDQAGDDESSEEDE*</PROTEIN_SEQ>
  21                         <EXON FEAT_NAME = "162.e18653" COORDS = "61061-60801">
  22                                 <CDS FEAT_NAME = "162.c05241" COORDS = "60833-60801"/>
  23                         </EXON>
  24                         <EXON FEAT_NAME = "162.e18654" COORDS = "60736-60674">
  25                                 <CDS FEAT_NAME = "162.c05242" COORDS = "60736-60674"/>
  26                         </EXON>
  27                         <EXON FEAT_NAME = "162.e18655" COORDS = "60619-60487">
  28                                 <CDS FEAT_NAME = "162.c05243" COORDS = "60619-60487"/>
  29                         </EXON>
  30                         <EXON FEAT_NAME = "162.e18656" COORDS = "60431-60224">
  31                                 <CDS FEAT_NAME = "162.c05244" COORDS = "60431-60224"/>
  32                         </EXON>
  33                         <EXON FEAT_NAME = "162.e18657" COORDS = "60160-59809">
  34                                 <CDS FEAT_NAME = "162.c05245" COORDS = "60160-59809"/>
  35                         </EXON>
  36                         <EXON FEAT_NAME = "162.e18658" COORDS = "59746-59343">
  37                                 <CDS FEAT_NAME = "162.c05246" COORDS = "59746-59633"/>
  38                         </EXON>
  39                 </MODEL>
  40         </TU>
  41 </ASSEMBLY>