| blob | 3ed6ea961096551945cf191ef6dfddd507e92167 |
1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>blastp</BlastOutput_program>
5 <BlastOutput_version>blastp 2.2.16 [Mar-25-2007]</BlastOutput_version>
6 <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db>AL591824.faa</BlastOutput_db>
8 <BlastOutput_query-ID>lcl|QUERY</BlastOutput_query-ID>
9 <BlastOutput_query-def>gi|1373160|gb|AAB57770.1| PyrR</BlastOutput_query-def>
10 <BlastOutput_query-len>173</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
14 <Parameters_expect>10</Parameters_expect>
15 <Parameters_include>0.002</Parameters_include>
16 <Parameters_gap-open>11</Parameters_gap-open>
17 <Parameters_gap-extend>1</Parameters_gap-extend>
18 <Parameters_filter>F</Parameters_filter>
19 </Parameters>
20 </BlastOutput_param>
21 <BlastOutput_iterations>
22 <Iteration>
23 <Iteration_iter-num>1</Iteration_iter-num>
24 <Iteration_hits>
25 <Hit>
26 <Hit_num>1</Hit_num>
27 <Hit_id>gi|16411294|emb|CAC99918.1|</Hit_id>
28 <Hit_def>pyrR [Listeria monocytogenes]</Hit_def>
29 <Hit_accession>CAC99918</Hit_accession>
30 <Hit_len>183</Hit_len>
31 <Hit_hsps>
32 <Hsp>
33 <Hsp_num>1</Hsp_num>
34 <Hsp_bit-score>209.92</Hsp_bit-score>
35 <Hsp_score>533</Hsp_score>
36 <Hsp_evalue>4.5377e-56</Hsp_evalue>
37 <Hsp_query-from>1</Hsp_query-from>
38 <Hsp_query-to>171</Hsp_query-to>
39 <Hsp_hit-from>1</Hsp_hit-from>
40 <Hsp_hit-to>172</Hsp_hit-to>
41 <Hsp_query-frame>1</Hsp_query-frame>
42 <Hsp_hit-frame>1</Hsp_hit-frame>
43 <Hsp_identity>117</Hsp_identity>
44 <Hsp_positive>140</Hsp_positive>
45 <Hsp_gaps>1</Hsp_gaps>
46 <Hsp_align-len>172</Hsp_align-len>
47 <Hsp_qseq>MNQKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-KKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ</Hsp_qseq>
48 <Hsp_hseq>MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDH</Hsp_hseq>
49 <Hsp_midline>M ++ V++DE AI+RALTR+++E+IERNKG N LVGIKTRGIYLA+RL +RI +IEG V VG+IDITLYRDDLS K EP V G +IP DI +KV+LVDDVLYTGRTVRA MDAL+DVGRP+ I LAVL DRGHRELPIRADY+GKNIPTS +E+V V+L +VD </Hsp_midline>
50 </Hsp>
51 </Hit_hsps>
52 </Hit>
53 <Hit>
54 <Hit_num>2</Hit_num>
55 <Hit_id>gi|16409584|emb|CAD00746.1|</Hit_id>
56 <Hit_def>fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes]</Hit_def>
57 <Hit_accession>CAD00746</Hit_accession>
58 <Hit_len>648</Hit_len>
59 <Hit_hsps>
60 <Hsp>
61 <Hsp_num>1</Hsp_num>
62 <Hsp_bit-score>37.7354</Hsp_bit-score>
63 <Hsp_score>86</Hsp_score>
64 <Hsp_evalue>0.000286309</Hsp_evalue>
65 <Hsp_query-from>4</Hsp_query-from>
66 <Hsp_query-to>155</Hsp_query-to>
67 <Hsp_hit-from>475</Hsp_hit-from>
68 <Hsp_hit-to>617</Hsp_hit-to>
69 <Hsp_query-frame>1</Hsp_query-frame>
70 <Hsp_hit-frame>1</Hsp_hit-frame>
71 <Hsp_identity>32</Hsp_identity>
72 <Hsp_positive>78</Hsp_positive>
73 <Hsp_gaps>11</Hsp_gaps>
74 <Hsp_align-len>153</Hsp_align-len>
75 <Hsp_qseq>KAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDR-GHRELPIRADYIGKNIP</Hsp_qseq>
76 <Hsp_hseq>QKVLISEDELQEKIRELGRELTTEYEG-RNPLVVGVLKGATPFMTDLLKRVDTY----LEMDFMDVSSYGN--GTVSSGEVKIIK--DLNASVEGRDVLVIEDIIDSGRTLSYLVD-LIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVP</Hsp_hseq>
77 <Hsp_midline>+ V++ E ++ + + E+ +G N ++VG+ L +R++ + + +D++ Y + +S + ++K D+ + + V++++D++ +GRT+ +D L+ + S++L L+D+ R + I ADY+G +P</Hsp_midline>
78 </Hsp>
79 </Hit_hsps>
80 </Hit>
81 <Hit>
82 <Hit_num>3</Hit_num>
83 <Hit_id>gi|16411285|emb|CAC99909.1|</Hit_id>
84 <Hit_def>pyrE [Listeria monocytogenes]</Hit_def>
85 <Hit_accession>CAC99909</Hit_accession>
86 <Hit_len>209</Hit_len>
87 <Hit_hsps>
88 <Hsp>
89 <Hsp_num>1</Hsp_num>
90 <Hsp_bit-score>29.261</Hsp_bit-score>
91 <Hsp_score>64</Hsp_score>
92 <Hsp_evalue>0.107059</Hsp_evalue>
93 <Hsp_query-from>32</Hsp_query-from>
94 <Hsp_query-to>125</Hsp_query-to>
95 <Hsp_hit-from>38</Hsp_hit-from>
96 <Hsp_hit-to>142</Hsp_hit-to>
97 <Hsp_query-frame>1</Hsp_query-frame>
98 <Hsp_hit-frame>1</Hsp_hit-frame>
99 <Hsp_identity>32</Hsp_identity>
100 <Hsp_positive>53</Hsp_positive>
101 <Hsp_gaps>33</Hsp_gaps>
102 <Hsp_align-len>116</Hsp_align-len>
103 <Hsp_qseq>NNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITL-----------YRDDLSKKTSNDEPLV----------KGADIPVDITD-QKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
104 <Hsp_hseq>DNRLTLGFPKVRQFIAKSLAEKIKQ------TFGEIDVVAGTATAGIPHAAWVSDLL-----DLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAG</Hsp_hseq>
105 <Hsp_midline>+N + +G ++AK LAE+I+Q T GEID+ + DL D P+V KG I I+ QKV++++D++ TG + ++AL + G</Hsp_midline>
106 </Hsp>
107 </Hit_hsps>
108 </Hit>
109 <Hit>
110 <Hit_num>4</Hit_num>
111 <Hit_id>gi|16409989|emb|CAC98678.1|</Hit_id>
112 <Hit_def>lmo0600 [Listeria monocytogenes]</Hit_def>
113 <Hit_accession>CAC98678</Hit_accession>
114 <Hit_len>196</Hit_len>
115 <Hit_hsps>
116 <Hsp>
117 <Hsp_num>1</Hsp_num>
118 <Hsp_bit-score>28.4906</Hsp_bit-score>
119 <Hsp_score>62</Hsp_score>
120 <Hsp_evalue>0.15199</Hsp_evalue>
121 <Hsp_query-from>123</Hsp_query-from>
122 <Hsp_query-to>149</Hsp_query-to>
123 <Hsp_hit-from>49</Hsp_hit-from>
124 <Hsp_hit-to>75</Hsp_hit-to>
125 <Hsp_query-frame>1</Hsp_query-frame>
126 <Hsp_hit-frame>1</Hsp_hit-frame>
127 <Hsp_identity>11</Hsp_identity>
128 <Hsp_positive>16</Hsp_positive>
129 <Hsp_align-len>27</Hsp_align-len>
130 <Hsp_qseq>DVGRPSSIQLAVLVDRGHRELPIRADY</Hsp_qseq>
131 <Hsp_hseq>DLGKPEEIAADIISERGIREEPTEMDY</Hsp_hseq>
132 <Hsp_midline>D+G+P I ++ +RG RE P DY</Hsp_midline>
133 </Hsp>
134 </Hit_hsps>
135 </Hit>
136 <Hit>
137 <Hit_num>5</Hit_num>
138 <Hit_id>gi|16411556|emb|CAD00164.1|</Hit_id>
139 <Hit_def>lmo2086 [Listeria monocytogenes]</Hit_def>
140 <Hit_accession>CAD00164</Hit_accession>
141 <Hit_len>423</Hit_len>
142 <Hit_hsps>
143 <Hsp>
144 <Hsp_num>1</Hsp_num>
145 <Hsp_bit-score>25.7942</Hsp_bit-score>
146 <Hsp_score>55</Hsp_score>
147 <Hsp_evalue>1.0709</Hsp_evalue>
148 <Hsp_query-from>49</Hsp_query-from>
149 <Hsp_query-to>82</Hsp_query-to>
150 <Hsp_hit-from>281</Hsp_hit-from>
151 <Hsp_hit-to>313</Hsp_hit-to>
152 <Hsp_query-frame>1</Hsp_query-frame>
153 <Hsp_hit-frame>1</Hsp_hit-frame>
154 <Hsp_identity>14</Hsp_identity>
155 <Hsp_positive>21</Hsp_positive>
156 <Hsp_gaps>1</Hsp_gaps>
157 <Hsp_align-len>34</Hsp_align-len>
158 <Hsp_qseq>RLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSN</Hsp_qseq>
159 <Hsp_hseq>KMAE-IENIEGNETLFYEKITCLYKEIMAYKTTN</Hsp_hseq>
160 <Hsp_midline>++AE IE IEGN E LY++ ++ KT+N</Hsp_midline>
161 </Hsp>
162 </Hit_hsps>
163 </Hit>
164 <Hit>
165 <Hit_num>6</Hit_num>
166 <Hit_id>gi|16412165|emb|CAD00878.1|</Hit_id>
167 <Hit_def>lmo2665 [Listeria monocytogenes]</Hit_def>
168 <Hit_accession>CAD00878</Hit_accession>
169 <Hit_len>423</Hit_len>
170 <Hit_hsps>
171 <Hsp>
172 <Hsp_num>1</Hsp_num>
173 <Hsp_bit-score>25.409</Hsp_bit-score>
174 <Hsp_score>54</Hsp_score>
175 <Hsp_evalue>1.43409</Hsp_evalue>
176 <Hsp_query-from>109</Hsp_query-from>
177 <Hsp_query-to>136</Hsp_query-to>
178 <Hsp_hit-from>289</Hsp_hit-from>
179 <Hsp_hit-to>316</Hsp_hit-to>
180 <Hsp_query-frame>1</Hsp_query-frame>
181 <Hsp_hit-frame>1</Hsp_hit-frame>
182 <Hsp_identity>8</Hsp_identity>
183 <Hsp_positive>18</Hsp_positive>
184 <Hsp_align-len>28</Hsp_align-len>
185 <Hsp_qseq>YTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
186 <Hsp_hseq>FKGRELYIGLDAALSIGHPANISTGLIL</Hsp_hseq>
187 <Hsp_midline>+ GR + G+DA + +G P++I +++</Hsp_midline>
188 </Hsp>
189 </Hit_hsps>
190 </Hit>
191 <Hit>
192 <Hit_num>7</Hit_num>
193 <Hit_id>gi|16412220|emb|CAD00933.1|</Hit_id>
194 <Hit_def>lmo2720 [Listeria monocytogenes]</Hit_def>
195 <Hit_accession>CAD00933</Hit_accession>
196 <Hit_len>525</Hit_len>
197 <Hit_hsps>
198 <Hsp>
199 <Hsp_num>1</Hsp_num>
200 <Hsp_bit-score>25.409</Hsp_bit-score>
201 <Hsp_score>54</Hsp_score>
202 <Hsp_evalue>1.49518</Hsp_evalue>
203 <Hsp_query-from>58</Hsp_query-from>
204 <Hsp_query-to>74</Hsp_query-to>
205 <Hsp_hit-from>355</Hsp_hit-from>
206 <Hsp_hit-to>372</Hsp_hit-to>
207 <Hsp_query-frame>1</Hsp_query-frame>
208 <Hsp_hit-frame>1</Hsp_hit-frame>
209 <Hsp_identity>12</Hsp_identity>
210 <Hsp_positive>14</Hsp_positive>
211 <Hsp_gaps>1</Hsp_gaps>
212 <Hsp_align-len>18</Hsp_align-len>
213 <Hsp_qseq>EGNPVTVGEI-DITLYRD</Hsp_qseq>
214 <Hsp_hseq>DGNPVGVGEIGDIAMRRD</Hsp_hseq>
215 <Hsp_midline>+GNPV VGEI DI + RD</Hsp_midline>
216 </Hsp>
217 </Hit_hsps>
218 </Hit>
219 <Hit>
220 <Hit_num>8</Hit_num>
221 <Hit_id>gi|16411665|emb|CAD00273.1|</Hit_id>
222 <Hit_def>lmo2195 [Listeria monocytogenes]</Hit_def>
223 <Hit_accession>CAD00273</Hit_accession>
224 <Hit_len>309</Hit_len>
225 <Hit_hsps>
226 <Hsp>
227 <Hsp_num>1</Hsp_num>
228 <Hsp_bit-score>25.0238</Hsp_bit-score>
229 <Hsp_score>53</Hsp_score>
230 <Hsp_evalue>2.07022</Hsp_evalue>
231 <Hsp_query-from>76</Hsp_query-from>
232 <Hsp_query-to>109</Hsp_query-to>
233 <Hsp_hit-from>262</Hsp_hit-from>
234 <Hsp_hit-to>295</Hsp_hit-to>
235 <Hsp_query-frame>1</Hsp_query-frame>
236 <Hsp_hit-frame>1</Hsp_hit-frame>
237 <Hsp_identity>13</Hsp_identity>
238 <Hsp_positive>19</Hsp_positive>
239 <Hsp_align-len>34</Hsp_align-len>
240 <Hsp_qseq>LSKKTSNDEPLVKGADIPVDITDQKVILVDDVLY</Hsp_qseq>
241 <Hsp_hseq>VSSIQTNDYPVIMGTTILFAVMLVFVILVVDILY</Hsp_hseq>
242 <Hsp_midline>+S +ND P++ G I + VILV D+LY</Hsp_midline>
243 </Hsp>
244 </Hit_hsps>
245 </Hit>
246 <Hit>
247 <Hit_num>9</Hit_num>
248 <Hit_id>gi|16412026|emb|CAD00616.1|</Hit_id>
249 <Hit_def>upp [Listeria monocytogenes]</Hit_def>
250 <Hit_accession>CAD00616</Hit_accession>
251 <Hit_len>209</Hit_len>
252 <Hit_hsps>
253 <Hsp>
254 <Hsp_num>1</Hsp_num>
255 <Hsp_bit-score>24.6386</Hsp_bit-score>
256 <Hsp_score>52</Hsp_score>
257 <Hsp_evalue>2.21313</Hsp_evalue>
258 <Hsp_query-from>69</Hsp_query-from>
259 <Hsp_query-to>125</Hsp_query-to>
260 <Hsp_hit-from>100</Hsp_hit-from>
261 <Hsp_hit-to>151</Hsp_hit-to>
262 <Hsp_query-frame>1</Hsp_query-frame>
263 <Hsp_hit-frame>1</Hsp_hit-frame>
264 <Hsp_identity>17</Hsp_identity>
265 <Hsp_positive>27</Hsp_positive>
266 <Hsp_gaps>5</Hsp_gaps>
267 <Hsp_align-len>57</Hsp_align-len>
268 <Hsp_qseq>ITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
269 <Hsp_hseq>VGLYRDH-----DTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRG</Hsp_hseq>
270 <Hsp_midline>+ LYRD EP+ +P D+ ++ I+VD +L TG + +D L G</Hsp_midline>
271 </Hsp>
272 </Hit_hsps>
273 </Hit>
274 <Hit>
275 <Hit_num>10</Hit_num>
276 <Hit_id>gi|16410953|emb|CAC99602.1|</Hit_id>
277 <Hit_def>apt [Listeria monocytogenes]</Hit_def>
278 <Hit_accession>CAC99602</Hit_accession>
279 <Hit_len>173</Hit_len>
280 <Hit_hsps>
281 <Hsp>
282 <Hsp_num>1</Hsp_num>
283 <Hsp_bit-score>24.6386</Hsp_bit-score>
284 <Hsp_score>52</Hsp_score>
285 <Hsp_evalue>2.25037</Hsp_evalue>
286 <Hsp_query-from>99</Hsp_query-from>
287 <Hsp_query-to>125</Hsp_query-to>
288 <Hsp_hit-from>115</Hsp_hit-from>
289 <Hsp_hit-to>141</Hsp_hit-to>
290 <Hsp_query-frame>1</Hsp_query-frame>
291 <Hsp_hit-frame>1</Hsp_hit-frame>
292 <Hsp_identity>10</Hsp_identity>
293 <Hsp_positive>19</Hsp_positive>
294 <Hsp_align-len>27</Hsp_align-len>
295 <Hsp_qseq>QKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
296 <Hsp_hseq>QRVLITDDLLATGGTIEATIKLVEELG</Hsp_hseq>
297 <Hsp_midline>Q+V++ DD+L TG T+ A + + ++G</Hsp_midline>
298 </Hsp>
299 </Hit_hsps>
300 </Hit>
301 <Hit>
302 <Hit_num>11</Hit_num>
303 <Hit_id>gi|16410386|emb|CAC99062.1|</Hit_id>
304 <Hit_def>lmo0984 [Listeria monocytogenes]</Hit_def>
305 <Hit_accession>CAC99062</Hit_accession>
306 <Hit_len>151</Hit_len>
307 <Hit_hsps>
308 <Hsp>
309 <Hsp_num>1</Hsp_num>
310 <Hsp_bit-score>24.2534</Hsp_bit-score>
311 <Hsp_score>51</Hsp_score>
312 <Hsp_evalue>2.91465</Hsp_evalue>
313 <Hsp_query-from>58</Hsp_query-from>
314 <Hsp_query-to>95</Hsp_query-to>
315 <Hsp_hit-from>7</Hsp_hit-from>
316 <Hsp_hit-to>40</Hsp_hit-to>
317 <Hsp_query-frame>1</Hsp_query-frame>
318 <Hsp_hit-frame>1</Hsp_hit-frame>
319 <Hsp_identity>12</Hsp_identity>
320 <Hsp_positive>22</Hsp_positive>
321 <Hsp_gaps>4</Hsp_gaps>
322 <Hsp_align-len>38</Hsp_align-len>
323 <Hsp_qseq>EGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVD</Hsp_qseq>
324 <Hsp_hseq>QNNNLAVGEVDVYCHPDNLEEVTN----IVMGIDEPTE</Hsp_hseq>
325 <Hsp_midline>+ N + VGE+D+ + D+L + T+ +V G D P +</Hsp_midline>
326 </Hsp>
327 </Hit_hsps>
328 </Hit>
329 <Hit>
330 <Hit_num>12</Hit_num>
331 <Hit_id>gi|16409884|emb|CAC98587.1|</Hit_id>
332 <Hit_def>lmo0508 [Listeria monocytogenes]</Hit_def>
333 <Hit_accession>CAC98587</Hit_accession>
334 <Hit_len>423</Hit_len>
335 <Hit_hsps>
336 <Hsp>
337 <Hsp_num>1</Hsp_num>
338 <Hsp_bit-score>23.8682</Hsp_bit-score>
339 <Hsp_score>50</Hsp_score>
340 <Hsp_evalue>3.83855</Hsp_evalue>
341 <Hsp_query-from>109</Hsp_query-from>
342 <Hsp_query-to>136</Hsp_query-to>
343 <Hsp_hit-from>288</Hsp_hit-from>
344 <Hsp_hit-to>315</Hsp_hit-to>
345 <Hsp_query-frame>1</Hsp_query-frame>
346 <Hsp_hit-frame>1</Hsp_hit-frame>
347 <Hsp_identity>9</Hsp_identity>
348 <Hsp_positive>17</Hsp_positive>
349 <Hsp_align-len>28</Hsp_align-len>
350 <Hsp_qseq>YTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
351 <Hsp_hseq>FPGRELFIGLDSAVGIGHPFVLSLGLLM</Hsp_hseq>
352 <Hsp_midline>+ GR + G+D+ V +G P + L +L+</Hsp_midline>
353 </Hsp>
354 </Hit_hsps>
355 </Hit>
356 <Hit>
357 <Hit_num>13</Hit_num>
358 <Hit_id>gi|16409885|emb|CAC98588.1|</Hit_id>
359 <Hit_def>prs [Listeria monocytogenes]</Hit_def>
360 <Hit_accession>CAC98588</Hit_accession>
361 <Hit_len>311</Hit_len>
362 <Hit_hsps>
363 <Hsp>
364 <Hsp_num>1</Hsp_num>
365 <Hsp_bit-score>23.8682</Hsp_bit-score>
366 <Hsp_score>50</Hsp_score>
367 <Hsp_evalue>4.1379</Hsp_evalue>
368 <Hsp_query-from>16</Hsp_query-from>
369 <Hsp_query-to>133</Hsp_query-to>
370 <Hsp_hit-from>148</Hsp_hit-from>
371 <Hsp_hit-to>247</Hsp_hit-to>
372 <Hsp_query-frame>1</Hsp_query-frame>
373 <Hsp_hit-frame>1</Hsp_hit-frame>
374 <Hsp_identity>28</Hsp_identity>
375 <Hsp_positive>51</Hsp_positive>
376 <Hsp_gaps>18</Hsp_gaps>
377 <Hsp_align-len>118</Hsp_align-len>
378 <Hsp_qseq>ALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA</Hsp_qseq>
379 <Hsp_hseq>AIPLIGDYLIE-NYGEKDVVVVAPDHSGVVRARRIADRLNA----PIAI-----------LNRKPRPHEDEI--MSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACA</Hsp_hseq>
380 <Hsp_midline>A+ I +IE N G + ++V G+ A+R+A+R+ P+ + L++K E + + D+ + I+VDD++ TG D L++ G I A</Hsp_midline>
381 </Hsp>
382 </Hit_hsps>
383 </Hit>
384 <Hit>
385 <Hit_num>14</Hit_num>
386 <Hit_id>gi|16411021|emb|CAC99670.1|</Hit_id>
387 <Hit_def>lmo1592 [Listeria monocytogenes]</Hit_def>
388 <Hit_accession>CAC99670</Hit_accession>
389 <Hit_len>403</Hit_len>
390 <Hit_hsps>
391 <Hsp>
392 <Hsp_num>1</Hsp_num>
393 <Hsp_bit-score>23.483</Hsp_bit-score>
394 <Hsp_score>49</Hsp_score>
395 <Hsp_evalue>5.97338</Hsp_evalue>
396 <Hsp_query-from>114</Hsp_query-from>
397 <Hsp_query-to>154</Hsp_query-to>
398 <Hsp_hit-from>88</Hsp_hit-from>
399 <Hsp_hit-to>128</Hsp_hit-to>
400 <Hsp_query-frame>1</Hsp_query-frame>
401 <Hsp_hit-frame>1</Hsp_hit-frame>
402 <Hsp_identity>13</Hsp_identity>
403 <Hsp_positive>19</Hsp_positive>
404 <Hsp_align-len>41</Hsp_align-len>
405 <Hsp_qseq>VRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNI</Hsp_qseq>
406 <Hsp_hseq>VKAAALALVQDAHEENGTFKVAARRSHREFPLDSNEINQEI</Hsp_hseq>
407 <Hsp_midline>V+A ALV + V R HRE P+ ++ I + I</Hsp_midline>
408 </Hsp>
409 </Hit_hsps>
410 </Hit>
411 <Hit>
412 <Hit_num>15</Hit_num>
413 <Hit_id>gi|16409435|emb|CAC98291.1|</Hit_id>
414 <Hit_def>lmo0076 [Listeria monocytogenes]</Hit_def>
415 <Hit_accession>CAC98291</Hit_accession>
416 <Hit_len>350</Hit_len>
417 <Hit_hsps>
418 <Hsp>
419 <Hsp_num>1</Hsp_num>
420 <Hsp_bit-score>22.7126</Hsp_bit-score>
421 <Hsp_score>47</Hsp_score>
422 <Hsp_evalue>8.62304</Hsp_evalue>
423 <Hsp_query-from>14</Hsp_query-from>
424 <Hsp_query-to>44</Hsp_query-to>
425 <Hsp_hit-from>5</Hsp_hit-from>
426 <Hsp_hit-to>35</Hsp_hit-to>
427 <Hsp_query-frame>1</Hsp_query-frame>
428 <Hsp_hit-frame>1</Hsp_hit-frame>
429 <Hsp_identity>9</Hsp_identity>
430 <Hsp_positive>16</Hsp_positive>
431 <Hsp_align-len>31</Hsp_align-len>
432 <Hsp_qseq>RRALTRIAHEMIERNKGMNNCILVGIKTRGI</Hsp_qseq>
433 <Hsp_hseq>QRDIDKYYDMLVEKNSNYEGVFFVGVKTTGI</Hsp_hseq>
434 <Hsp_midline>+R + + ++E+N VG+KT GI</Hsp_midline>
435 </Hsp>
436 </Hit_hsps>
437 </Hit>
438 <Hit>
439 <Hit_num>16</Hit_num>
440 <Hit_id>gi|16410603|emb|CAC99265.1|</Hit_id>
441 <Hit_def>lmo1187 [Listeria monocytogenes]</Hit_def>
442 <Hit_accession>CAC99265</Hit_accession>
443 <Hit_len>147</Hit_len>
444 <Hit_hsps>
445 <Hsp>
446 <Hsp_num>1</Hsp_num>
447 <Hsp_bit-score>22.7126</Hsp_bit-score>
448 <Hsp_score>47</Hsp_score>
449 <Hsp_evalue>9.06572</Hsp_evalue>
450 <Hsp_query-from>106</Hsp_query-from>
451 <Hsp_query-to>134</Hsp_query-to>
452 <Hsp_hit-from>102</Hsp_hit-from>
453 <Hsp_hit-to>130</Hsp_hit-to>
454 <Hsp_query-frame>1</Hsp_query-frame>
455 <Hsp_hit-frame>1</Hsp_hit-frame>
456 <Hsp_identity>11</Hsp_identity>
457 <Hsp_positive>18</Hsp_positive>
458 <Hsp_align-len>29</Hsp_align-len>
459 <Hsp_qseq>DVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
460 <Hsp_hseq>DVVIDGRTVSAGPGEIIFIPKGSQIKFSV</Hsp_hseq>
461 <Hsp_midline>DV+ GRTV AG ++ + + S I+ +V</Hsp_midline>
462 </Hsp>
463 </Hit_hsps>
464 </Hit>
465 </Iteration_hits>
466 <Iteration_stat>
467 <Statistics>
468 <Statistics_db-num>2846</Statistics_db-num>
469 <Statistics_db-len>870878</Statistics_db-len>
470 <Statistics_hsp-len>75</Statistics_hsp-len>
471 <Statistics_eff-space>6.44279e+07</Statistics_eff-space>
472 <Statistics_kappa>0.041</Statistics_kappa>
473 <Statistics_lambda>0.267</Statistics_lambda>
474 <Statistics_entropy>0.14</Statistics_entropy>
475 </Statistics>
476 </Iteration_stat>
477 </Iteration>
478 <Iteration>
479 <Iteration_iter-num>2</Iteration_iter-num>
480 <Iteration_hits>
481 <Hit>
482 <Hit_num>1</Hit_num>
483 <Hit_id>gi|16411294|emb|CAC99918.1|</Hit_id>
484 <Hit_def>pyrR [Listeria monocytogenes]</Hit_def>
485 <Hit_accession>CAC99918</Hit_accession>
486 <Hit_len>183</Hit_len>
487 <Hit_hsps>
488 <Hsp>
489 <Hsp_num>1</Hsp_num>
490 <Hsp_bit-score>260.954</Hsp_bit-score>
491 <Hsp_score>666</Hsp_score>
492 <Hsp_evalue>1.96714e-71</Hsp_evalue>
493 <Hsp_query-from>1</Hsp_query-from>
494 <Hsp_query-to>171</Hsp_query-to>
495 <Hsp_hit-from>1</Hsp_hit-from>
496 <Hsp_hit-to>172</Hsp_hit-to>
497 <Hsp_query-frame>1</Hsp_query-frame>
498 <Hsp_hit-frame>1</Hsp_hit-frame>
499 <Hsp_identity>117</Hsp_identity>
500 <Hsp_positive>140</Hsp_positive>
501 <Hsp_gaps>1</Hsp_gaps>
502 <Hsp_align-len>172</Hsp_align-len>
503 <Hsp_qseq>MNQKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-KKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ</Hsp_qseq>
504 <Hsp_hseq>MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDH</Hsp_hseq>
505 <Hsp_midline>M ++ V++DE AI+RALTR+++E+IERNKG N LVGIKTRGIYLA+RL +RI +IEG V VG+IDITLYRDDLS K EP V G +IP DI +KV+LVDDVLYTGRTVRA MDAL+DVGRP+ I LAVL DRGHRELPIRADY+GKNIPTS +E+V V+L +VD </Hsp_midline>
506 </Hsp>
507 </Hit_hsps>
508 </Hit>
509 <Hit>
510 <Hit_num>2</Hit_num>
511 <Hit_id>gi|16409584|emb|CAD00746.1|</Hit_id>
512 <Hit_def>fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes]</Hit_def>
513 <Hit_accession>CAD00746</Hit_accession>
514 <Hit_len>648</Hit_len>
515 <Hit_hsps>
516 <Hsp>
517 <Hsp_num>1</Hsp_num>
518 <Hsp_bit-score>196.241</Hsp_bit-score>
519 <Hsp_score>498</Hsp_score>
520 <Hsp_evalue>5.16352e-52</Hsp_evalue>
521 <Hsp_query-from>4</Hsp_query-from>
522 <Hsp_query-to>155</Hsp_query-to>
523 <Hsp_hit-from>475</Hsp_hit-from>
524 <Hsp_hit-to>617</Hsp_hit-to>
525 <Hsp_query-frame>1</Hsp_query-frame>
526 <Hsp_hit-frame>1</Hsp_hit-frame>
527 <Hsp_identity>32</Hsp_identity>
528 <Hsp_positive>78</Hsp_positive>
529 <Hsp_gaps>11</Hsp_gaps>
530 <Hsp_align-len>153</Hsp_align-len>
531 <Hsp_qseq>KAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDR-GHRELPIRADYIGKNIP</Hsp_qseq>
532 <Hsp_hseq>QKVLISEDELQEKIRELGRELTTEYEG-RNPLVVGVLKGATPFMTDLLKRVDTY----LEMDFMDVSSYGN--GTVSSGEVKIIK--DLNASVEGRDVLVIEDIIDSGRTLSYLVD-LIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVP</Hsp_hseq>
533 <Hsp_midline>+ V++ E ++ + + E+ +G N ++VG+ L +R++ + + +D++ Y + +S + ++K D+ + + V++++D++ +GRT+ +D L+ + S++L L+D+ R + I ADY+G +P</Hsp_midline>
534 </Hsp>
535 </Hit_hsps>
536 </Hit>
537 <Hit>
538 <Hit_num>3</Hit_num>
539 <Hit_id>gi|16411285|emb|CAC99909.1|</Hit_id>
540 <Hit_def>pyrE [Listeria monocytogenes]</Hit_def>
541 <Hit_accession>CAC99909</Hit_accession>
542 <Hit_len>209</Hit_len>
543 <Hit_hsps>
544 <Hsp>
545 <Hsp_num>1</Hsp_num>
546 <Hsp_bit-score>30.2198</Hsp_bit-score>
547 <Hsp_score>67</Hsp_score>
548 <Hsp_evalue>0.0528281</Hsp_evalue>
549 <Hsp_query-from>33</Hsp_query-from>
550 <Hsp_query-to>125</Hsp_query-to>
551 <Hsp_hit-from>39</Hsp_hit-from>
552 <Hsp_hit-to>142</Hsp_hit-to>
553 <Hsp_query-frame>1</Hsp_query-frame>
554 <Hsp_hit-frame>1</Hsp_hit-frame>
555 <Hsp_identity>31</Hsp_identity>
556 <Hsp_positive>51</Hsp_positive>
557 <Hsp_gaps>33</Hsp_gaps>
558 <Hsp_align-len>115</Hsp_align-len>
559 <Hsp_qseq>NCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSN-----------DEPLV----------KGADIPVDIT-DQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
560 <Hsp_hseq>NRLTLGFPKVRQFIAKSLAEKIKQ------TFGEIDVVA-----GTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAG</Hsp_hseq>
561 <Hsp_midline>N + +G ++AK LAE+I+Q T GEID+ T+ D P+V KG I I+ QKV++++D++ TG + ++AL + G</Hsp_midline>
562 </Hsp>
563 </Hit_hsps>
564 </Hit>
565 <Hit>
566 <Hit_num>4</Hit_num>
567 <Hit_id>gi|16412026|emb|CAD00616.1|</Hit_id>
568 <Hit_def>upp [Listeria monocytogenes]</Hit_def>
569 <Hit_accession>CAD00616</Hit_accession>
570 <Hit_len>209</Hit_len>
571 <Hit_hsps>
572 <Hsp>
573 <Hsp_num>1</Hsp_num>
574 <Hsp_bit-score>29.0642</Hsp_bit-score>
575 <Hsp_score>64</Hsp_score>
576 <Hsp_evalue>0.115741</Hsp_evalue>
577 <Hsp_query-from>69</Hsp_query-from>
578 <Hsp_query-to>136</Hsp_query-to>
579 <Hsp_hit-from>100</Hsp_hit-from>
580 <Hsp_hit-to>161</Hsp_hit-to>
581 <Hsp_query-frame>1</Hsp_query-frame>
582 <Hsp_hit-frame>1</Hsp_hit-frame>
583 <Hsp_identity>19</Hsp_identity>
584 <Hsp_positive>32</Hsp_positive>
585 <Hsp_gaps>6</Hsp_gaps>
586 <Hsp_align-len>68</Hsp_align-len>
587 <Hsp_qseq>ITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
588 <Hsp_hseq>VGLYRDH-----DTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRG-ARNMKFMCLV</Hsp_hseq>
589 <Hsp_midline>+ LYRD EP+ +P D+ ++ I+VD +L TG + +D L G +++ LV</Hsp_midline>
590 </Hsp>
591 </Hit_hsps>
592 </Hit>
593 <Hit>
594 <Hit_num>5</Hit_num>
595 <Hit_id>gi|16409885|emb|CAC98588.1|</Hit_id>
596 <Hit_def>prs [Listeria monocytogenes]</Hit_def>
597 <Hit_accession>CAC98588</Hit_accession>
598 <Hit_len>311</Hit_len>
599 <Hit_hsps>
600 <Hsp>
601 <Hsp_num>1</Hsp_num>
602 <Hsp_bit-score>29.0642</Hsp_bit-score>
603 <Hsp_score>64</Hsp_score>
604 <Hsp_evalue>0.126867</Hsp_evalue>
605 <Hsp_query-from>95</Hsp_query-from>
606 <Hsp_query-to>134</Hsp_query-to>
607 <Hsp_hit-from>209</Hsp_hit-from>
608 <Hsp_hit-to>248</Hsp_hit-to>
609 <Hsp_query-frame>1</Hsp_query-frame>
610 <Hsp_hit-frame>1</Hsp_hit-frame>
611 <Hsp_identity>12</Hsp_identity>
612 <Hsp_positive>19</Hsp_positive>
613 <Hsp_align-len>40</Hsp_align-len>
614 <Hsp_qseq>DITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
615 <Hsp_hseq>DVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACAT</Hsp_hseq>
616 <Hsp_midline>D+ + I+VDD++ TG D L++ G I A </Hsp_midline>
617 </Hsp>
618 </Hit_hsps>
619 </Hit>
620 <Hit>
621 <Hit_num>6</Hit_num>
622 <Hit_id>gi|16409989|emb|CAC98678.1|</Hit_id>
623 <Hit_def>lmo0600 [Listeria monocytogenes]</Hit_def>
624 <Hit_accession>CAC98678</Hit_accession>
625 <Hit_len>196</Hit_len>
626 <Hit_hsps>
627 <Hsp>
628 <Hsp_num>1</Hsp_num>
629 <Hsp_bit-score>26.7531</Hsp_bit-score>
630 <Hsp_score>58</Hsp_score>
631 <Hsp_evalue>0.555562</Hsp_evalue>
632 <Hsp_query-from>123</Hsp_query-from>
633 <Hsp_query-to>149</Hsp_query-to>
634 <Hsp_hit-from>49</Hsp_hit-from>
635 <Hsp_hit-to>75</Hsp_hit-to>
636 <Hsp_query-frame>1</Hsp_query-frame>
637 <Hsp_hit-frame>1</Hsp_hit-frame>
638 <Hsp_identity>11</Hsp_identity>
639 <Hsp_positive>16</Hsp_positive>
640 <Hsp_align-len>27</Hsp_align-len>
641 <Hsp_qseq>DVGRPSSIQLAVLVDRGHRELPIRADY</Hsp_qseq>
642 <Hsp_hseq>DLGKPEEIAADIISERGIREEPTEMDY</Hsp_hseq>
643 <Hsp_midline>D+G+P I ++ +RG RE P DY</Hsp_midline>
644 </Hsp>
645 </Hit_hsps>
646 </Hit>
647 <Hit>
648 <Hit_num>7</Hit_num>
649 <Hit_id>gi|16411222|emb|CAC99846.1|</Hit_id>
650 <Hit_def>glutamine phosphoribosylpyrophosphate amidotransferase [Listeria monocytogenes]</Hit_def>
651 <Hit_accession>CAC99846</Hit_accession>
652 <Hit_len>475</Hit_len>
653 <Hit_hsps>
654 <Hsp>
655 <Hsp_num>1</Hsp_num>
656 <Hsp_bit-score>26.3679</Hsp_bit-score>
657 <Hsp_score>57</Hsp_score>
658 <Hsp_evalue>0.678735</Hsp_evalue>
659 <Hsp_query-from>96</Hsp_query-from>
660 <Hsp_query-to>132</Hsp_query-to>
661 <Hsp_hit-from>346</Hsp_hit-from>
662 <Hsp_hit-to>381</Hsp_hit-to>
663 <Hsp_query-frame>1</Hsp_query-frame>
664 <Hsp_hit-frame>1</Hsp_hit-frame>
665 <Hsp_identity>7</Hsp_identity>
666 <Hsp_positive>20</Hsp_positive>
667 <Hsp_gaps>1</Hsp_gaps>
668 <Hsp_align-len>37</Hsp_align-len>
669 <Hsp_qseq>ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQL</Hsp_qseq>
670 <Hsp_hseq>VEGKRVVMIDDSIVRGTTSKRIVQLLREAG-AAEVHV</Hsp_hseq>
671 <Hsp_midline>+ ++V+++DD + G T + + L + G + + +</Hsp_midline>
672 </Hsp>
673 </Hit_hsps>
674 </Hit>
675 <Hit>
676 <Hit_num>8</Hit_num>
677 <Hit_id>gi|16409865|emb|CAC98568.1|</Hit_id>
678 <Hit_def>lmo0489 [Listeria monocytogenes]</Hit_def>
679 <Hit_accession>CAC98568</Hit_accession>
680 <Hit_len>664</Hit_len>
681 <Hit_hsps>
682 <Hsp>
683 <Hsp_num>1</Hsp_num>
684 <Hsp_bit-score>25.5975</Hsp_bit-score>
685 <Hsp_score>55</Hsp_score>
686 <Hsp_evalue>1.22738</Hsp_evalue>
687 <Hsp_query-from>112</Hsp_query-from>
688 <Hsp_query-to>157</Hsp_query-to>
689 <Hsp_hit-from>612</Hsp_hit-from>
690 <Hsp_hit-to>657</Hsp_hit-to>
691 <Hsp_query-frame>1</Hsp_query-frame>
692 <Hsp_hit-frame>1</Hsp_hit-frame>
693 <Hsp_identity>11</Hsp_identity>
694 <Hsp_positive>19</Hsp_positive>
695 <Hsp_align-len>46</Hsp_align-len>
696 <Hsp_qseq>RTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTS</Hsp_qseq>
697 <Hsp_hseq>RPERPLMEELAAYGKEKQIEIVNIGDSAATRKILEGVREGRNILTT</Hsp_hseq>
698 <Hsp_midline>R R M+ L G+ I++ + D + G+NI T+</Hsp_midline>
699 </Hsp>
700 </Hit_hsps>
701 </Hit>
702 <Hit>
703 <Hit_num>9</Hit_num>
704 <Hit_id>gi|16411665|emb|CAD00273.1|</Hit_id>
705 <Hit_def>lmo2195 [Listeria monocytogenes]</Hit_def>
706 <Hit_accession>CAD00273</Hit_accession>
707 <Hit_len>309</Hit_len>
708 <Hit_hsps>
709 <Hsp>
710 <Hsp_num>1</Hsp_num>
711 <Hsp_bit-score>25.5975</Hsp_bit-score>
712 <Hsp_score>55</Hsp_score>
713 <Hsp_evalue>1.25849</Hsp_evalue>
714 <Hsp_query-from>76</Hsp_query-from>
715 <Hsp_query-to>109</Hsp_query-to>
716 <Hsp_hit-from>262</Hsp_hit-from>
717 <Hsp_hit-to>295</Hsp_hit-to>
718 <Hsp_query-frame>1</Hsp_query-frame>
719 <Hsp_hit-frame>1</Hsp_hit-frame>
720 <Hsp_identity>13</Hsp_identity>
721 <Hsp_positive>19</Hsp_positive>
722 <Hsp_align-len>34</Hsp_align-len>
723 <Hsp_qseq>LSKKTSNDEPLVKGADIPVDITDQKVILVDDVLY</Hsp_qseq>
724 <Hsp_hseq>VSSIQTNDYPVIMGTTILFAVMLVFVILVVDILY</Hsp_hseq>
725 <Hsp_midline>+S +ND P++ G I + VILV D+LY</Hsp_midline>
726 </Hsp>
727 </Hit_hsps>
728 </Hit>
729 <Hit>
730 <Hit_num>10</Hit_num>
731 <Hit_id>gi|16409905|emb|CAC98608.1|</Hit_id>
732 <Hit_def>lmo0529 [Listeria monocytogenes]</Hit_def>
733 <Hit_accession>CAC98608</Hit_accession>
734 <Hit_len>416</Hit_len>
735 <Hit_hsps>
736 <Hsp>
737 <Hsp_num>1</Hsp_num>
738 <Hsp_bit-score>24.8271</Hsp_bit-score>
739 <Hsp_score>53</Hsp_score>
740 <Hsp_evalue>2.18278</Hsp_evalue>
741 <Hsp_query-from>36</Hsp_query-from>
742 <Hsp_query-to>106</Hsp_query-to>
743 <Hsp_hit-from>23</Hsp_hit-from>
744 <Hsp_hit-to>88</Hsp_hit-to>
745 <Hsp_query-frame>1</Hsp_query-frame>
746 <Hsp_hit-frame>1</Hsp_hit-frame>
747 <Hsp_identity>16</Hsp_identity>
748 <Hsp_positive>31</Hsp_positive>
749 <Hsp_gaps>5</Hsp_gaps>
750 <Hsp_align-len>71</Hsp_align-len>
751 <Hsp_qseq>LVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDD</Hsp_qseq>
752 <Hsp_hseq>IVLIVAGYVYYLKNEARKVPEI---PVEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVD--RYEIIVIND</Hsp_hseq>
753 <Hsp_midline>+V I +Y K A ++ +I PV V + + + + K + D PVD ++I+++D</Hsp_midline>
754 </Hsp>
755 </Hit_hsps>
756 </Hit>
757 <Hit>
758 <Hit_num>11</Hit_num>
759 <Hit_id>gi|16410603|emb|CAC99265.1|</Hit_id>
760 <Hit_def>lmo1187 [Listeria monocytogenes]</Hit_def>
761 <Hit_accession>CAC99265</Hit_accession>
762 <Hit_len>147</Hit_len>
763 <Hit_hsps>
764 <Hsp>
765 <Hsp_num>1</Hsp_num>
766 <Hsp_bit-score>24.4419</Hsp_bit-score>
767 <Hsp_score>52</Hsp_score>
768 <Hsp_evalue>3.07312</Hsp_evalue>
769 <Hsp_query-from>96</Hsp_query-from>
770 <Hsp_query-to>134</Hsp_query-to>
771 <Hsp_hit-from>97</Hsp_hit-from>
772 <Hsp_hit-to>130</Hsp_hit-to>
773 <Hsp_query-frame>1</Hsp_query-frame>
774 <Hsp_hit-frame>1</Hsp_hit-frame>
775 <Hsp_identity>11</Hsp_identity>
776 <Hsp_positive>21</Hsp_positive>
777 <Hsp_gaps>5</Hsp_gaps>
778 <Hsp_align-len>39</Hsp_align-len>
779 <Hsp_qseq>ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
780 <Hsp_hseq>IEGRLDVVID-----GRTVSAGPGEIIFIPKGSQIKFSV</Hsp_hseq>
781 <Hsp_midline>I + +++D GRTV AG ++ + + S I+ +V</Hsp_midline>
782 </Hsp>
783 </Hit_hsps>
784 </Hit>
785 <Hit>
786 <Hit_num>12</Hit_num>
787 <Hit_id>gi|16410224|emb|CAC98913.1|</Hit_id>
788 <Hit_def>putative peptidoglycan bound protein (LPXTG motif) [Listeria monocytogenes]</Hit_def>
789 <Hit_accession>CAC98913</Hit_accession>
790 <Hit_len>334</Hit_len>
791 <Hit_hsps>
792 <Hsp>
793 <Hsp_num>1</Hsp_num>
794 <Hsp_bit-score>24.4419</Hsp_bit-score>
795 <Hsp_score>52</Hsp_score>
796 <Hsp_evalue>3.17742</Hsp_evalue>
797 <Hsp_query-from>80</Hsp_query-from>
798 <Hsp_query-to>125</Hsp_query-to>
799 <Hsp_hit-from>66</Hsp_hit-from>
800 <Hsp_hit-to>104</Hsp_hit-to>
801 <Hsp_query-frame>1</Hsp_query-frame>
802 <Hsp_hit-frame>1</Hsp_hit-frame>
803 <Hsp_identity>14</Hsp_identity>
804 <Hsp_positive>19</Hsp_positive>
805 <Hsp_gaps>7</Hsp_gaps>
806 <Hsp_align-len>46</Hsp_align-len>
807 <Hsp_qseq>TSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
808 <Hsp_hseq>TPKDIPGYKLREIPHNATG-------NITDTGIIVRYIYDKTIDVR</Hsp_hseq>
809 <Hsp_midline>T D P K +IP + T ++ TG VR D +DV </Hsp_midline>
810 </Hsp>
811 </Hit_hsps>
812 </Hit>
813 <Hit>
814 <Hit_num>13</Hit_num>
815 <Hit_id>gi|16412154|emb|CAD00867.1|</Hit_id>
816 <Hit_def>fus [Listeria monocytogenes]</Hit_def>
817 <Hit_accession>CAD00867</Hit_accession>
818 <Hit_len>695</Hit_len>
819 <Hit_hsps>
820 <Hsp>
821 <Hsp_num>1</Hsp_num>
822 <Hsp_bit-score>24.0567</Hsp_bit-score>
823 <Hsp_score>51</Hsp_score>
824 <Hsp_evalue>3.42521</Hsp_evalue>
825 <Hsp_query-from>110</Hsp_query-from>
826 <Hsp_query-to>148</Hsp_query-to>
827 <Hsp_hit-from>443</Hsp_hit-from>
828 <Hsp_hit-to>472</Hsp_hit-to>
829 <Hsp_query-frame>1</Hsp_query-frame>
830 <Hsp_hit-frame>1</Hsp_hit-frame>
831 <Hsp_identity>14</Hsp_identity>
832 <Hsp_positive>20</Hsp_positive>
833 <Hsp_gaps>9</Hsp_gaps>
834 <Hsp_align-len>39</Hsp_align-len>
835 <Hsp_qseq>TGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRAD</Hsp_qseq>
836 <Hsp_hseq>TGQTLISGMGEL---------HLDILVDRMRREFRVEAN</Hsp_hseq>
837 <Hsp_midline>TG+T+ +GM L L +LVDR RE + A+</Hsp_midline>
838 </Hsp>
839 </Hit_hsps>
840 </Hit>
841 <Hit>
842 <Hit_num>14</Hit_num>
843 <Hit_id>gi|16409857|emb|CAC98560.1|</Hit_id>
844 <Hit_def>lmo0481 [Listeria monocytogenes]</Hit_def>
845 <Hit_accession>CAC98560</Hit_accession>
846 <Hit_len>566</Hit_len>
847 <Hit_hsps>
848 <Hsp>
849 <Hsp_num>1</Hsp_num>
850 <Hsp_bit-score>24.0567</Hsp_bit-score>
851 <Hsp_score>51</Hsp_score>
852 <Hsp_evalue>3.84962</Hsp_evalue>
853 <Hsp_query-from>8</Hsp_query-from>
854 <Hsp_query-to>68</Hsp_query-to>
855 <Hsp_hit-from>25</Hsp_hit-from>
856 <Hsp_hit-to>92</Hsp_hit-to>
857 <Hsp_query-frame>1</Hsp_query-frame>
858 <Hsp_hit-frame>1</Hsp_hit-frame>
859 <Hsp_identity>14</Hsp_identity>
860 <Hsp_positive>21</Hsp_positive>
861 <Hsp_gaps>7</Hsp_gaps>
862 <Hsp_align-len>68</Hsp_align-len>
863 <Hsp_qseq>LDEQAIRRALTRIAHEMIERNKGMNNCILVG----IKTRGIYLAKRLA---ERIEQIEGNPVTVGEID</Hsp_qseq>
864 <Hsp_hseq>ISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSND</Hsp_hseq>
865 <Hsp_midline>+ EQ + + R G VG +YL + + I IEG + G D</Hsp_midline>
866 </Hsp>
867 </Hit_hsps>
868 </Hit>
869 <Hit>
870 <Hit_num>15</Hit_num>
871 <Hit_id>gi|16411180|emb|CAC99804.1|</Hit_id>
872 <Hit_def>lmo1726 [Listeria monocytogenes]</Hit_def>
873 <Hit_accession>CAC99804</Hit_accession>
874 <Hit_len>327</Hit_len>
875 <Hit_hsps>
876 <Hsp>
877 <Hsp_num>1</Hsp_num>
878 <Hsp_bit-score>23.6715</Hsp_bit-score>
879 <Hsp_score>50</Hsp_score>
880 <Hsp_evalue>4.74252</Hsp_evalue>
881 <Hsp_query-from>36</Hsp_query-from>
882 <Hsp_query-to>108</Hsp_query-to>
883 <Hsp_hit-from>190</Hsp_hit-from>
884 <Hsp_hit-to>251</Hsp_hit-to>
885 <Hsp_query-frame>1</Hsp_query-frame>
886 <Hsp_hit-frame>1</Hsp_hit-frame>
887 <Hsp_identity>15</Hsp_identity>
888 <Hsp_positive>29</Hsp_positive>
889 <Hsp_gaps>19</Hsp_gaps>
890 <Hsp_align-len>77</Hsp_align-len>
891 <Hsp_qseq>LVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGAD----IPVDITDQKVILVDDVL</Hsp_qseq>
892 <Hsp_hseq>LFGEPVKATYFATKLPTGVDGLGPIILEYPTFNIT---------------IIQGKNSQSFLPSEIYGQKGTLIVDPL</Hsp_hseq>
893 <Hsp_midline>L G + Y A +L ++ + + +IT +++G + +P +I QK L+ D L</Hsp_midline>
894 </Hsp>
895 </Hit_hsps>
896 </Hit>
897 <Hit>
898 <Hit_num>16</Hit_num>
899 <Hit_id>gi|16411460|emb|CAD00085.1|</Hit_id>
900 <Hit_def>lmo2007 [Listeria monocytogenes]</Hit_def>
901 <Hit_accession>CAD00085</Hit_accession>
902 <Hit_len>485</Hit_len>
903 <Hit_hsps>
904 <Hsp>
905 <Hsp_num>1</Hsp_num>
906 <Hsp_bit-score>22.9011</Hsp_bit-score>
907 <Hsp_score>48</Hsp_score>
908 <Hsp_evalue>7.56717</Hsp_evalue>
909 <Hsp_query-from>47</Hsp_query-from>
910 <Hsp_query-to>114</Hsp_query-to>
911 <Hsp_hit-from>51</Hsp_hit-from>
912 <Hsp_hit-to>137</Hsp_hit-to>
913 <Hsp_query-frame>1</Hsp_query-frame>
914 <Hsp_hit-frame>1</Hsp_hit-frame>
915 <Hsp_identity>19</Hsp_identity>
916 <Hsp_positive>35</Hsp_positive>
917 <Hsp_gaps>19</Hsp_gaps>
918 <Hsp_align-len>87</Hsp_align-len>
919 <Hsp_qseq>AKRLAERIEQIEGNPVTVGEIDITLYRDDLSKK-TSNDEPLV-------------KGADIP----VDITDQKVIL-VDDVLYTGRTV</Hsp_qseq>
920 <Hsp_hseq>MKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVSYSQKGAFLPLNKYLDKEGKKMKAELNDVLWEGATI</Hsp_hseq>
921 <Hsp_midline> K + + E+ G V + +ID Y + S + + KGA +P +D +K+ ++DVL+ G T+</Hsp_midline>
922 </Hsp>
923 </Hit_hsps>
924 </Hit>
925 </Iteration_hits>
926 <Iteration_stat>
927 <Statistics>
928 <Statistics_db-num>2846</Statistics_db-num>
929 <Statistics_db-len>870878</Statistics_db-len>
930 <Statistics_hsp-len>75</Statistics_hsp-len>
931 <Statistics_eff-space>6.44279e+07</Statistics_eff-space>
932 <Statistics_kappa>0.0475563</Statistics_kappa>
933 <Statistics_lambda>0.267</Statistics_lambda>
934 <Statistics_entropy>0.14</Statistics_entropy>
935 </Statistics>
936 </Iteration_stat>
937 <Iteration_message>CONVERGED</Iteration_message>
938 </Iteration>
939 </BlastOutput_iterations>
940 </BlastOutput>
941 <?xml version="1.0"?>
942 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
943 <BlastOutput>
944 <BlastOutput_program>blastp</BlastOutput_program>
945 <BlastOutput_version>blastp 2.2.16 [Mar-25-2007]</BlastOutput_version>
946 <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
947 <BlastOutput_db>AL591824.faa</BlastOutput_db>
948 <BlastOutput_query-ID>lcl|QUERY</BlastOutput_query-ID>
949 <BlastOutput_query-def>gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42]</BlastOutput_query-def>
950 <BlastOutput_query-len>378</BlastOutput_query-len>
951 <BlastOutput_param>
952 <Parameters>
953 <Parameters_matrix>BLOSUM62</Parameters_matrix>
954 <Parameters_expect>10</Parameters_expect>
955 <Parameters_include>0.002</Parameters_include>
956 <Parameters_gap-open>11</Parameters_gap-open>
957 <Parameters_gap-extend>1</Parameters_gap-extend>
958 <Parameters_filter>F</Parameters_filter>
959 </Parameters>
960 </BlastOutput_param>
961 <BlastOutput_iterations>
962 <Iteration>
963 <Iteration_iter-num>1</Iteration_iter-num>
964 <Iteration_hits>
965 <Hit>
966 <Hit_num>1</Hit_num>
967 <Hit_id>gi|16409361|emb|CAC98217.1|</Hit_id>
968 <Hit_def>DNA polymerase III, beta chain [Listeria monocytogenes]</Hit_def>
969 <Hit_accession>CAC98217</Hit_accession>
970 <Hit_len>381</Hit_len>
971 <Hit_hsps>
972 <Hsp>
973 <Hsp_num>1</Hsp_num>
974 <Hsp_bit-score>420.239</Hsp_bit-score>
975 <Hsp_score>1079</Hsp_score>
976 <Hsp_evalue>5.57178e-119</Hsp_evalue>
977 <Hsp_query-from>1</Hsp_query-from>
978 <Hsp_query-to>378</Hsp_query-to>
979 <Hsp_hit-from>1</Hsp_hit-from>
980 <Hsp_hit-to>381</Hsp_hit-to>
981 <Hsp_query-frame>1</Hsp_query-frame>
982 <Hsp_hit-frame>1</Hsp_hit-frame>
983 <Hsp_identity>221</Hsp_identity>
984 <Hsp_positive>293</Hsp_positive>
985 <Hsp_gaps>3</Hsp_gaps>
986 <Hsp_align-len>381</Hsp_align-len>
987 <Hsp_qseq>MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIR---TPNDETIVQLILPVRTY</Hsp_qseq>
988 <Hsp_hseq>MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY</Hsp_hseq>
989 <Hsp_midline>MKF I++DRLV++V +V +A+S+RTTIPILTGIKIV +DEGV+ TGSDSDISIE+FIP ++D+ IV ++ G IVLQ+++F +IV++LP VEIEV + Y T I SG+A F LNGLD EYP LP++ + I+IP ++LKN++RQTVFAVSA E RP+LTGVNW ++ +L ATDSHRLALR+ L+ D YN+VIPGKSL+EL+K+LDD E +++ + Q+LFK K++LF+SRLL+G+YPDT+ LIP ++K+E+V+N+K FLQAIDRASLLARE RNNV+KL +E+SSNSPE+G V E V + GEE+ ISF+ KYMMDAL+ EG DI+ISF+G MRPF++R N I+QLI PVRTY</Hsp_midline>
990 </Hsp>
991 </Hit_hsps>
992 </Hit>
993 <Hit>
994 <Hit_num>2</Hit_num>
995 <Hit_id>gi|16409959|emb|CAC98662.1|</Hit_id>
996 <Hit_def>lmo0583 [Listeria monocytogenes]</Hit_def>
997 <Hit_accession>CAC98662</Hit_accession>
998 <Hit_len>776</Hit_len>
999 <Hit_hsps>
1000 <Hsp>
1001 <Hsp_num>1</Hsp_num>
1002 <Hsp_bit-score>32.7278</Hsp_bit-score>
1003 <Hsp_score>73</Hsp_score>
1004 <Hsp_evalue>0.0242028</Hsp_evalue>
1005 <Hsp_query-from>63</Hsp_query-from>
1006 <Hsp_query-to>181</Hsp_query-to>
1007 <Hsp_hit-from>304</Hsp_hit-from>
1008 <Hsp_hit-to>432</Hsp_hit-to>
1009 <Hsp_query-frame>1</Hsp_query-frame>
1010 <Hsp_hit-frame>1</Hsp_hit-frame>
1011 <Hsp_identity>31</Hsp_identity>
1012 <Hsp_positive>52</Hsp_positive>
1013 <Hsp_gaps>10</Hsp_gaps>
1014 <Hsp_align-len>129</Hsp_align-len>
1015 <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNL--IRQTVFAVSASETRPILTGVNWKVENGELLCTATDS</Hsp_qseq>
1016 <Hsp_hseq>DDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSS</Hsp_hseq>
1017 <Hsp_midline>D E++ ID L R F++ + + A +EV+ + T+ R K + G E QI + IPT+L N ++ +F + R I+ V+W+ E G+ T S</Hsp_midline>
1018 </Hsp>
1019 </Hit_hsps>
1020 </Hit>
1021 <Hit>
1022 <Hit_num>3</Hit_num>
1023 <Hit_id>gi|16410942|emb|CAC99591.1|</Hit_id>
1024 <Hit_def>lmo1513 [Listeria monocytogenes]</Hit_def>
1025 <Hit_accession>CAC99591</Hit_accession>
1026 <Hit_len>382</Hit_len>
1027 <Hit_hsps>
1028 <Hsp>
1029 <Hsp_num>1</Hsp_num>
1030 <Hsp_bit-score>28.8758</Hsp_bit-score>
1031 <Hsp_score>63</Hsp_score>
1032 <Hsp_evalue>0.340848</Hsp_evalue>
1033 <Hsp_query-from>96</Hsp_query-from>
1034 <Hsp_query-to>126</Hsp_query-to>
1035 <Hsp_hit-from>266</Hsp_hit-from>
1036 <Hsp_hit-to>296</Hsp_hit-to>
1037 <Hsp_query-frame>1</Hsp_query-frame>
1038 <Hsp_hit-frame>1</Hsp_hit-frame>
1039 <Hsp_identity>12</Hsp_identity>
1040 <Hsp_positive>19</Hsp_positive>
1041 <Hsp_align-len>31</Hsp_align-len>
1042 <Hsp_qseq>IEVQNQYLTIIRSGKAEFNLNGLDADEYPHL</Hsp_qseq>
1043 <Hsp_hseq>ISFKKRMAEIWRSAELDFEVNGLEADTLPHV</Hsp_hseq>
1044 <Hsp_midline>I + + I RS + +F +NGL+AD PH+</Hsp_midline>
1045 </Hsp>
1046 </Hit_hsps>
1047 </Hit>
1048 <Hit>
1049 <Hit_num>4</Hit_num>
1050 <Hit_id>gi|16409922|emb|CAC98625.1|</Hit_id>
1051 <Hit_def>lmo0546 [Listeria monocytogenes]</Hit_def>
1052 <Hit_accession>CAC98625</Hit_accession>
1053 <Hit_len>416</Hit_len>
1054 <Hit_hsps>
1055 <Hsp>
1056 <Hsp_num>1</Hsp_num>
1057 <Hsp_bit-score>28.4906</Hsp_bit-score>
1058 <Hsp_score>62</Hsp_score>
1059 <Hsp_evalue>0.513003</Hsp_evalue>
1060 <Hsp_query-from>270</Hsp_query-from>
1061 <Hsp_query-to>319</Hsp_query-to>
1062 <Hsp_hit-from>155</Hsp_hit-from>
1063 <Hsp_hit-to>203</Hsp_hit-to>
1064 <Hsp_query-frame>1</Hsp_query-frame>
1065 <Hsp_hit-frame>1</Hsp_hit-frame>
1066 <Hsp_identity>15</Hsp_identity>
1067 <Hsp_positive>29</Hsp_positive>
1068 <Hsp_gaps>1</Hsp_gaps>
1069 <Hsp_align-len>50</Hsp_align-len>
1070 <Hsp_qseq>EFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLAD</Hsp_qseq>
1071 <Hsp_hseq>EFSKSMGMEVLVAGKGKNNKLKISANP-DSCQVEADGKNMASHMLAAFQD</Hsp_hseq>
1072 <Hsp_midline>EF +++ L+A +G+NN +K+SA P DS ++ ++ + + A D</Hsp_midline>
1073 </Hsp>
1074 </Hit_hsps>
1075 </Hit>
1076 <Hit>
1077 <Hit_num>5</Hit_num>
1078 <Hit_id>gi|16411998|emb|CAD00588.1|</Hit_id>
1079 <Hit_def>translocase binding subunit (ATPase) [Listeria monocytogenes]</Hit_def>
1080 <Hit_accession>CAD00588</Hit_accession>
1081 <Hit_len>837</Hit_len>
1082 <Hit_hsps>
1083 <Hsp>
1084 <Hsp_num>1</Hsp_num>
1085 <Hsp_bit-score>26.5646</Hsp_bit-score>
1086 <Hsp_score>57</Hsp_score>
1087 <Hsp_evalue>1.85422</Hsp_evalue>
1088 <Hsp_query-from>63</Hsp_query-from>
1089 <Hsp_query-to>140</Hsp_query-to>
1090 <Hsp_hit-from>310</Hsp_hit-from>
1091 <Hsp_hit-to>395</Hsp_hit-to>
1092 <Hsp_query-frame>1</Hsp_query-frame>
1093 <Hsp_hit-frame>1</Hsp_hit-frame>
1094 <Hsp_identity>21</Hsp_identity>
1095 <Hsp_positive>36</Hsp_positive>
1096 <Hsp_gaps>8</Hsp_gaps>
1097 <Hsp_align-len>86</Hsp_align-len>
1098 <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTD</Hsp_qseq>
1099 <Hsp_hseq>DDEVLIVDQFTGRIMKGRRFSEGLHQALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEIPTN</Hsp_hseq>
1100 <Hsp_midline>D E++ +DQ +++ R FSE + + A + +QN+ T+ R K + G E I I+IPT+</Hsp_midline>
1101 </Hsp>
1102 </Hit_hsps>
1103 </Hit>
1104 <Hit>
1105 <Hit_num>6</Hit_num>
1106 <Hit_id>gi|16411204|emb|CAC99828.1|</Hit_id>
1107 <Hit_def>lmo1750 [Listeria monocytogenes]</Hit_def>
1108 <Hit_accession>CAC99828</Hit_accession>
1109 <Hit_len>184</Hit_len>
1110 <Hit_hsps>
1111 <Hsp>
1112 <Hsp_num>1</Hsp_num>
1113 <Hsp_bit-score>26.5646</Hsp_bit-score>
1114 <Hsp_score>57</Hsp_score>
1115 <Hsp_evalue>2.11904</Hsp_evalue>
1116 <Hsp_query-from>308</Hsp_query-from>
1117 <Hsp_query-to>340</Hsp_query-to>
1118 <Hsp_hit-from>49</Hsp_hit-from>
1119 <Hsp_hit-to>80</Hsp_hit-to>
1120 <Hsp_query-frame>1</Hsp_query-frame>
1121 <Hsp_hit-frame>1</Hsp_hit-frame>
1122 <Hsp_identity>13</Hsp_identity>
1123 <Hsp_positive>22</Hsp_positive>
1124 <Hsp_gaps>1</Hsp_gaps>
1125 <Hsp_align-len>33</Hsp_align-len>
1126 <Hsp_qseq>EIGKVVEAVLADQIDGEELNISFSPKYMMDALK</Hsp_qseq>
1127 <Hsp_hseq>EVLRRLEEYFSDKSD-QGLNLSSFPKYMMETVK</Hsp_hseq>
1128 <Hsp_midline>E+ + +E +D+ D + LN+S PKYMM+ +K</Hsp_midline>
1129 </Hsp>
1130 </Hit_hsps>
1131 </Hit>
1132 <Hit>
1133 <Hit_num>7</Hit_num>
1134 <Hit_id>gi|16410207|emb|CAC98896.1|</Hit_id>
1135 <Hit_def>lmo0818 [Listeria monocytogenes]</Hit_def>
1136 <Hit_accession>CAC98896</Hit_accession>
1137 <Hit_len>876</Hit_len>
1138 <Hit_hsps>
1139 <Hsp>
1140 <Hsp_num>1</Hsp_num>
1141 <Hsp_bit-score>25.7942</Hsp_bit-score>
1142 <Hsp_score>55</Hsp_score>
1143 <Hsp_evalue>2.98338</Hsp_evalue>
1144 <Hsp_query-from>106</Hsp_query-from>
1145 <Hsp_query-to>167</Hsp_query-to>
1146 <Hsp_hit-from>28</Hsp_hit-from>
1147 <Hsp_hit-to>82</Hsp_hit-to>
1148 <Hsp_query-frame>1</Hsp_query-frame>
1149 <Hsp_hit-frame>1</Hsp_hit-frame>
1150 <Hsp_identity>18</Hsp_identity>
1151 <Hsp_positive>27</Hsp_positive>
1152 <Hsp_gaps>7</Hsp_gaps>
1153 <Hsp_align-len>62</Hsp_align-len>
1154 <Hsp_qseq>IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNW</Hsp_qseq>
1155 <Hsp_hseq>VKQKHAEFGTNEFEEGKKESLLQKIGHHLVEITTIVL-------LFAAAISAYLAITTGYGW</Hsp_hseq>
1156 <Hsp_midline>++ AEF N + + L Q HH ++I T +L +FA + S I TG W</Hsp_midline>
1157 </Hsp>
1158 </Hit_hsps>
1159 </Hit>
1160 <Hit>
1161 <Hit_num>8</Hit_num>
1162 <Hit_id>gi|16411261|emb|CAC99885.1|</Hit_id>
1163 <Hit_def>fabG [Listeria monocytogenes]</Hit_def>
1164 <Hit_accession>CAC99885</Hit_accession>
1165 <Hit_len>247</Hit_len>
1166 <Hit_hsps>
1167 <Hsp>
1168 <Hsp_num>1</Hsp_num>
1169 <Hsp_bit-score>25.7942</Hsp_bit-score>
1170 <Hsp_score>55</Hsp_score>
1171 <Hsp_evalue>3.27016</Hsp_evalue>
1172 <Hsp_query-from>276</Hsp_query-from>
1173 <Hsp_query-to>366</Hsp_query-to>
1174 <Hsp_hit-from>20</Hsp_hit-from>
1175 <Hsp_hit-to>106</Hsp_hit-to>
1176 <Hsp_query-frame>1</Hsp_query-frame>
1177 <Hsp_hit-frame>1</Hsp_hit-frame>
1178 <Hsp_identity>26</Hsp_identity>
1179 <Hsp_positive>40</Hsp_positive>
1180 <Hsp_gaps>6</Hsp_gaps>
1181 <Hsp_align-len>92</Hsp_align-len>
1182 <Hsp_qseq>DRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRP-FLIRTPNDE</Hsp_qseq>
1183 <Hsp_hseq>DIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFK-----QAIERFGRVDILVNNAGITRDNLLMRMKEDE</Hsp_hseq>
1184 <Hsp_midline>D A LA+EG N + P + E + E G VEA+ A+ E+++ F A++ DI ++ G R L+R DE</Hsp_midline>
1185 </Hsp>
1186 </Hit_hsps>
1187 </Hit>
1188 <Hit>
1189 <Hit_num>9</Hit_num>
1190 <Hit_id>gi|16410081|emb|CAC98770.1|</Hit_id>
1191 <Hit_def>two-component sensor histidine kinase CheA [Listeria monocytogenes]</Hit_def>
1192 <Hit_accession>CAC98770</Hit_accession>
1193 <Hit_len>618</Hit_len>
1194 <Hit_hsps>
1195 <Hsp>
1196 <Hsp_num>1</Hsp_num>
1197 <Hsp_bit-score>25.7942</Hsp_bit-score>
1198 <Hsp_score>55</Hsp_score>
1199 <Hsp_evalue>3.61454</Hsp_evalue>
1200 <Hsp_query-from>267</Hsp_query-from>
1201 <Hsp_query-to>322</Hsp_query-to>
1202 <Hsp_hit-from>275</Hsp_hit-from>
1203 <Hsp_hit-to>328</Hsp_hit-to>
1204 <Hsp_query-frame>1</Hsp_query-frame>
1205 <Hsp_hit-frame>1</Hsp_hit-frame>
1206 <Hsp_identity>14</Hsp_identity>
1207 <Hsp_positive>31</Hsp_positive>
1208 <Hsp_gaps>2</Hsp_gaps>
1209 <Hsp_align-len>56</Hsp_align-len>
1210 <Hsp_qseq>NTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQID</Hsp_qseq>
1211 <Hsp_hseq>NNKELMEHLGRFSSISKEIQNGLLNMRMVPVDS--VFNRFPKMVRTLAKELGKKID</Hsp_hseq>
1212 <Hsp_midline>N KE ++ + R S +++E +N ++ + P DS + + P++ + + L +ID</Hsp_midline>
1213 </Hsp>
1214 </Hit_hsps>
1215 </Hit>
1216 <Hit>
1217 <Hit_num>10</Hit_num>
1218 <Hit_id>gi|16410572|emb|CAC99234.1|</Hit_id>
1219 <Hit_def>lmo1156 [Listeria monocytogenes]</Hit_def>
1220 <Hit_accession>CAC99234</Hit_accession>
1221 <Hit_len>606</Hit_len>
1222 <Hit_hsps>
1223 <Hsp>
1224 <Hsp_num>1</Hsp_num>
1225 <Hsp_bit-score>25.409</Hsp_bit-score>
1226 <Hsp_score>54</Hsp_score>
1227 <Hsp_evalue>4.41591</Hsp_evalue>
1228 <Hsp_query-from>65</Hsp_query-from>
1229 <Hsp_query-to>95</Hsp_query-to>
1230 <Hsp_hit-from>440</Hsp_hit-from>
1231 <Hsp_hit-to>470</Hsp_hit-to>
1232 <Hsp_query-frame>1</Hsp_query-frame>
1233 <Hsp_hit-frame>1</Hsp_hit-frame>
1234 <Hsp_identity>12</Hsp_identity>
1235 <Hsp_positive>20</Hsp_positive>
1236 <Hsp_align-len>31</Hsp_align-len>
1237 <Hsp_qseq>EIVTIDQPGSIVLQARFFSEIVKKLPMATVE</Hsp_qseq>
1238 <Hsp_hseq>DMVTMIIQSEIGLEDRYLAEDIKKYPLAKVE</Hsp_hseq>
1239 <Hsp_midline>++VT+ I L+ R+ +E +KK P+A VE</Hsp_midline>
1240 </Hsp>
1241 </Hit_hsps>
1242 </Hit>
1243 <Hit>
1244 <Hit_num>11</Hit_num>
1245 <Hit_id>gi|16411268|emb|CAC99892.1|</Hit_id>
1246 <Hit_def>lmo1814 [Listeria monocytogenes]</Hit_def>
1247 <Hit_accession>CAC99892</Hit_accession>
1248 <Hit_len>552</Hit_len>
1249 <Hit_hsps>
1250 <Hsp>
1251 <Hsp_num>1</Hsp_num>
1252 <Hsp_bit-score>24.2534</Hsp_bit-score>
1253 <Hsp_score>51</Hsp_score>
1254 <Hsp_evalue>9.43565</Hsp_evalue>
1255 <Hsp_query-from>211</Hsp_query-from>
1256 <Hsp_query-to>238</Hsp_query-to>
1257 <Hsp_hit-from>495</Hsp_hit-from>
1258 <Hsp_hit-to>522</Hsp_hit-to>
1259 <Hsp_query-frame>1</Hsp_query-frame>
1260 <Hsp_hit-frame>1</Hsp_hit-frame>
1261 <Hsp_identity>11</Hsp_identity>
1262 <Hsp_positive>18</Hsp_positive>
1263 <Hsp_align-len>28</Hsp_align-len>
1264 <Hsp_qseq>LSKILDDNQELVDIVITETQVLFKAKNV</Hsp_qseq>
1265 <Hsp_hseq>LEKLLDDDSEIVTIIVGEDSDTTKAETL</Hsp_hseq>
1266 <Hsp_midline>L K+LDD+ E+V I++ E KA+ +</Hsp_midline>
1267 </Hsp>
1268 </Hit_hsps>
1269 </Hit>
1270 </Iteration_hits>
1271 <Iteration_stat>
1272 <Statistics>
1273 <Statistics_db-num>2846</Statistics_db-num>
1274 <Statistics_db-len>870878</Statistics_db-len>
1275 <Statistics_hsp-len>82</Statistics_hsp-len>
1276 <Statistics_eff-space>1.88702e+08</Statistics_eff-space>
1277 <Statistics_kappa>0.041</Statistics_kappa>
1278 <Statistics_lambda>0.267</Statistics_lambda>
1279 <Statistics_entropy>0.14</Statistics_entropy>
1280 </Statistics>
1281 </Iteration_stat>
1282 </Iteration>
1283 <Iteration>
1284 <Iteration_iter-num>2</Iteration_iter-num>
1285 <Iteration_hits>
1286 <Hit>
1287 <Hit_num>1</Hit_num>
1288 <Hit_id>gi|16409361|emb|CAC98217.1|</Hit_id>
1289 <Hit_def>DNA polymerase III, beta chain [Listeria monocytogenes]</Hit_def>
1290 <Hit_accession>CAC98217</Hit_accession>
1291 <Hit_len>381</Hit_len>
1292 <Hit_hsps>
1293 <Hsp>
1294 <Hsp_num>1</Hsp_num>
1295 <Hsp_bit-score>700.95</Hsp_bit-score>
1296 <Hsp_score>1808</Hsp_score>
1297 <Hsp_evalue>0</Hsp_evalue>
1298 <Hsp_query-from>1</Hsp_query-from>
1299 <Hsp_query-to>378</Hsp_query-to>
1300 <Hsp_hit-from>1</Hsp_hit-from>
1301 <Hsp_hit-to>381</Hsp_hit-to>
1302 <Hsp_query-frame>1</Hsp_query-frame>
1303 <Hsp_hit-frame>1</Hsp_hit-frame>
1304 <Hsp_identity>221</Hsp_identity>
1305 <Hsp_positive>293</Hsp_positive>
1306 <Hsp_gaps>3</Hsp_gaps>
1307 <Hsp_align-len>381</Hsp_align-len>
1308 <Hsp_qseq>MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIR---TPNDETIVQLILPVRTY</Hsp_qseq>
1309 <Hsp_hseq>MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY</Hsp_hseq>
1310 <Hsp_midline>MKF I++DRLV++V +V +A+S+RTTIPILTGIKIV +DEGV+ TGSDSDISIE+FIP ++D+ IV ++ G IVLQ+++F +IV++LP VEIEV + Y T I SG+A F LNGLD EYP LP++ + I+IP ++LKN++RQTVFAVSA E RP+LTGVNW ++ +L ATDSHRLALR+ L+ D YN+VIPGKSL+EL+K+LDD E +++ + Q+LFK K++LF+SRLL+G+YPDT+ LIP ++K+E+V+N+K FLQAIDRASLLARE RNNV+KL +E+SSNSPE+G V E V + GEE+ ISF+ KYMMDAL+ EG DI+ISF+G MRPF++R N I+QLI PVRTY</Hsp_midline>
1311 </Hsp>
1312 </Hit_hsps>
1313 </Hit>
1314 <Hit>
1315 <Hit_num>2</Hit_num>
1316 <Hit_id>gi|16409959|emb|CAC98662.1|</Hit_id>
1317 <Hit_def>lmo0583 [Listeria monocytogenes]</Hit_def>
1318 <Hit_accession>CAC98662</Hit_accession>
1319 <Hit_len>776</Hit_len>
1320 <Hit_hsps>
1321 <Hsp>
1322 <Hsp_num>1</Hsp_num>
1323 <Hsp_bit-score>34.9402</Hsp_bit-score>
1324 <Hsp_score>79</Hsp_score>
1325 <Hsp_evalue>0.00513589</Hsp_evalue>
1326 <Hsp_query-from>63</Hsp_query-from>
1327 <Hsp_query-to>181</Hsp_query-to>
1328 <Hsp_hit-from>304</Hsp_hit-from>
1329 <Hsp_hit-to>432</Hsp_hit-to>
1330 <Hsp_query-frame>1</Hsp_query-frame>
1331 <Hsp_hit-frame>1</Hsp_hit-frame>
1332 <Hsp_identity>31</Hsp_identity>
1333 <Hsp_positive>52</Hsp_positive>
1334 <Hsp_gaps>10</Hsp_gaps>
1335 <Hsp_align-len>129</Hsp_align-len>
1336 <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNL--IRQTVFAVSASETRPILTGVNWKVENGELLCTATDS</Hsp_qseq>
1337 <Hsp_hseq>DDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSS</Hsp_hseq>
1338 <Hsp_midline>D E++ ID L R F++ + + A +EV+ + T+ R K + G E QI + IPT+L N ++ +F + R I+ V+W+ E G+ T S</Hsp_midline>
1339 </Hsp>
1340 </Hit_hsps>
1341 </Hit>
1342 <Hit>
1343 <Hit_num>3</Hit_num>
1344 <Hit_id>gi|16411998|emb|CAD00588.1|</Hit_id>
1345 <Hit_def>translocase binding subunit (ATPase) [Listeria monocytogenes]</Hit_def>
1346 <Hit_accession>CAD00588</Hit_accession>
1347 <Hit_len>837</Hit_len>
1348 <Hit_hsps>
1349 <Hsp>
1350 <Hsp_num>1</Hsp_num>
1351 <Hsp_bit-score>34.555</Hsp_bit-score>
1352 <Hsp_score>78</Hsp_score>
1353 <Hsp_evalue>0.00819482</Hsp_evalue>
1354 <Hsp_query-from>60</Hsp_query-from>
1355 <Hsp_query-to>147</Hsp_query-to>
1356 <Hsp_hit-from>308</Hsp_hit-from>
1357 <Hsp_hit-to>400</Hsp_hit-to>
1358 <Hsp_query-frame>1</Hsp_query-frame>
1359 <Hsp_hit-frame>1</Hsp_hit-frame>
1360 <Hsp_identity>23</Hsp_identity>
1361 <Hsp_positive>40</Hsp_positive>
1362 <Hsp_gaps>11</Hsp_gaps>
1363 <Hsp_align-len>96</Hsp_align-len>
1364 <Hsp_qseq>EDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQ--------YLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIR</Hsp_qseq>
1365 <Hsp_hseq>VQDDEVLI-VDQFTGRIMKGRRFSEGLHQALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEIPTN--KVIIR</Hsp_hseq>
1366 <Hsp_midline> DD+ ++ +DQ +++ R FSE + + A + +QN+ + R K + G E I I+IPT+ K +IR</Hsp_midline>
1367 </Hsp>
1368 </Hit_hsps>
1369 </Hit>
1370 <Hit>
1371 <Hit_num>4</Hit_num>
1372 <Hit_id>gi|16410192|emb|CAC98881.1|</Hit_id>
1373 <Hit_def>lmo0803 [Listeria monocytogenes]</Hit_def>
1374 <Hit_accession>CAC98881</Hit_accession>
1375 <Hit_len>682</Hit_len>
1376 <Hit_hsps>
1377 <Hsp>
1378 <Hsp_num>1</Hsp_num>
1379 <Hsp_bit-score>27.2362</Hsp_bit-score>
1380 <Hsp_score>59</Hsp_score>
1381 <Hsp_evalue>1.14482</Hsp_evalue>
1382 <Hsp_query-from>53</Hsp_query-from>
1383 <Hsp_query-to>129</Hsp_query-to>
1384 <Hsp_hit-from>406</Hsp_hit-from>
1385 <Hsp_hit-to>490</Hsp_hit-to>
1386 <Hsp_query-frame>1</Hsp_query-frame>
1387 <Hsp_hit-frame>1</Hsp_hit-frame>
1388 <Hsp_identity>20</Hsp_identity>
1389 <Hsp_positive>34</Hsp_positive>
1390 <Hsp_gaps>8</Hsp_gaps>
1391 <Hsp_align-len>85</Hsp_align-len>
1392 <Hsp_qseq>IESFI-PKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV------EIEVQNQYLTIIRSGKAEFNLN-GLDADEYPHLPQI</Hsp_qseq>
1393 <Hsp_hseq>IATFILPLLAKSEEVTTEDERAEIATRIRILRNVIRELKEQTLPETKAATDEVIEDYRKRIYDLQQNNSSNRGMDERERAKRLEI</Hsp_hseq>
1394 <Hsp_midline>I +FI P +E+ T D+ I + R ++++L T+ EV Y I + + N G+D E +I</Hsp_midline>
1395 </Hsp>
1396 </Hit_hsps>
1397 </Hit>
1398 <Hit>
1399 <Hit_num>5</Hit_num>
1400 <Hit_id>gi|16411204|emb|CAC99828.1|</Hit_id>
1401 <Hit_def>lmo1750 [Listeria monocytogenes]</Hit_def>
1402 <Hit_accession>CAC99828</Hit_accession>
1403 <Hit_len>184</Hit_len>
1404 <Hit_hsps>
1405 <Hsp>
1406 <Hsp_num>1</Hsp_num>
1407 <Hsp_bit-score>27.2362</Hsp_bit-score>
1408 <Hsp_score>59</Hsp_score>
1409 <Hsp_evalue>1.15441</Hsp_evalue>
1410 <Hsp_query-from>308</Hsp_query-from>
1411 <Hsp_query-to>340</Hsp_query-to>
1412 <Hsp_hit-from>49</Hsp_hit-from>
1413 <Hsp_hit-to>80</Hsp_hit-to>
1414 <Hsp_query-frame>1</Hsp_query-frame>
1415 <Hsp_hit-frame>1</Hsp_hit-frame>
1416 <Hsp_identity>13</Hsp_identity>
1417 <Hsp_positive>22</Hsp_positive>
1418 <Hsp_gaps>1</Hsp_gaps>
1419 <Hsp_align-len>33</Hsp_align-len>
1420 <Hsp_qseq>EIGKVVEAVLADQIDGEELNISFSPKYMMDALK</Hsp_qseq>
1421 <Hsp_hseq>EVLRRLEEYFSDKSD-QGLNLSSFPKYMMETVK</Hsp_hseq>
1422 <Hsp_midline>E+ + +E +D+ D + LN+S PKYMM+ +K</Hsp_midline>
1423 </Hsp>
1424 </Hit_hsps>
1425 </Hit>
1426 <Hit>
1427 <Hit_num>6</Hit_num>
1428 <Hit_id>gi|16410635|emb|CAC99297.1|</Hit_id>
1429 <Hit_def>lmo1219 [Listeria monocytogenes]</Hit_def>
1430 <Hit_accession>CAC99297</Hit_accession>
1431 <Hit_len>119</Hit_len>
1432 <Hit_hsps>
1433 <Hsp>
1434 <Hsp_num>1</Hsp_num>
1435 <Hsp_bit-score>27.2362</Hsp_bit-score>
1436 <Hsp_score>59</Hsp_score>
1437 <Hsp_evalue>1.18367</Hsp_evalue>
1438 <Hsp_query-from>150</Hsp_query-from>
1439 <Hsp_query-to>196</Hsp_query-to>
1440 <Hsp_hit-from>72</Hsp_hit-from>
1441 <Hsp_hit-to>118</Hsp_hit-to>
1442 <Hsp_query-frame>1</Hsp_query-frame>
1443 <Hsp_hit-frame>1</Hsp_hit-frame>
1444 <Hsp_identity>10</Hsp_identity>
1445 <Hsp_positive>21</Hsp_positive>
1446 <Hsp_align-len>47</Hsp_align-len>
1447 <Hsp_qseq>VFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPED</Hsp_qseq>
1448 <Hsp_hseq>VTIISTGSSNGFFTGIDWGAAFDYMHSVVADLKRVAIREVAIEKQEE</Hsp_hseq>
1449 <Hsp_midline>V +S + TG++W + D R+A+R+ ++ E+</Hsp_midline>
1450 </Hsp>
1451 </Hit_hsps>
1452 </Hit>
1453 <Hit>
1454 <Hit_num>7</Hit_num>
1455 <Hit_id>gi|16409423|emb|CAC98279.1|</Hit_id>
1456 <Hit_def>lmo0064 [Listeria monocytogenes]</Hit_def>
1457 <Hit_accession>CAC98279</Hit_accession>
1458 <Hit_len>233</Hit_len>
1459 <Hit_hsps>
1460 <Hsp>
1461 <Hsp_num>1</Hsp_num>
1462 <Hsp_bit-score>26.851</Hsp_bit-score>
1463 <Hsp_score>58</Hsp_score>
1464 <Hsp_evalue>1.37549</Hsp_evalue>
1465 <Hsp_query-from>314</Hsp_query-from>
1466 <Hsp_query-to>378</Hsp_query-to>
1467 <Hsp_hit-from>40</Hsp_hit-from>
1468 <Hsp_hit-to>112</Hsp_hit-to>
1469 <Hsp_query-frame>1</Hsp_query-frame>
1470 <Hsp_hit-frame>1</Hsp_hit-frame>
1471 <Hsp_identity>16</Hsp_identity>
1472 <Hsp_positive>30</Hsp_positive>
1473 <Hsp_gaps>8</Hsp_gaps>
1474 <Hsp_align-len>73</Hsp_align-len>
1475 <Hsp_qseq>EAVLADQID--------GEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIRTPNDETIVQLILPVRTY</Hsp_qseq>
1476 <Hsp_hseq>EDVFAEGFDRLKSKGILNEAGELTDGGGFLIDSLIEYYQSKKYVRMNQLMFAFLEKTPNELLVMIEITPQKEY</Hsp_hseq>
1477 <Hsp_midline>E V A+ D E ++ +++D+L + + M FL +TPN+ ++ I P + Y</Hsp_midline>
1478 </Hsp>
1479 </Hit_hsps>
1480 </Hit>
1481 <Hit>
1482 <Hit_num>8</Hit_num>
1483 <Hit_id>gi|16410481|emb|CAC99157.1|</Hit_id>
1484 <Hit_def>lmo1079 [Listeria monocytogenes]</Hit_def>
1485 <Hit_accession>CAC99157</Hit_accession>
1486 <Hit_len>952</Hit_len>
1487 <Hit_hsps>
1488 <Hsp>
1489 <Hsp_num>1</Hsp_num>
1490 <Hsp_bit-score>26.851</Hsp_bit-score>
1491 <Hsp_score>58</Hsp_score>
1492 <Hsp_evalue>1.45822</Hsp_evalue>
1493 <Hsp_query-from>170</Hsp_query-from>
1494 <Hsp_query-to>237</Hsp_query-to>
1495 <Hsp_hit-from>646</Hsp_hit-from>
1496 <Hsp_hit-to>710</Hsp_hit-to>
1497 <Hsp_query-frame>1</Hsp_query-frame>
1498 <Hsp_hit-frame>1</Hsp_hit-frame>
1499 <Hsp_identity>18</Hsp_identity>
1500 <Hsp_positive>32</Hsp_positive>
1501 <Hsp_gaps>11</Hsp_gaps>
1502 <Hsp_align-len>72</Hsp_align-len>
1503 <Hsp_qseq>ENGELLCTAT-DSHRLALRKAKLDIPEDSSYNVVIP---GKSLTELSKILDDNQELVDIVITETQVLFKAKN</Hsp_qseq>
1504 <Hsp_hseq>KEEALSYNAIIDNKDTSKREYKSNIKE-LEFETSIPKVNGKAPAKLTK------DKIEVSNAENSIQFKLKN</Hsp_hseq>
1505 <Hsp_midline>+ L A D+ + R+ K +I E + IP GK+ +L+K + +++ E + FK KN</Hsp_midline>
1506 </Hsp>
1507 </Hit_hsps>
1508 </Hit>
1509 <Hit>
1510 <Hit_num>9</Hit_num>
1511 <Hit_id>gi|16409922|emb|CAC98625.1|</Hit_id>
1512 <Hit_def>lmo0546 [Listeria monocytogenes]</Hit_def>
1513 <Hit_accession>CAC98625</Hit_accession>
1514 <Hit_len>416</Hit_len>
1515 <Hit_hsps>
1516 <Hsp>
1517 <Hsp_num>1</Hsp_num>
1518 <Hsp_bit-score>26.851</Hsp_bit-score>
1519 <Hsp_score>58</Hsp_score>
1520 <Hsp_evalue>1.47044</Hsp_evalue>
1521 <Hsp_query-from>280</Hsp_query-from>
1522 <Hsp_query-to>300</Hsp_query-to>
1523 <Hsp_hit-from>7</Hsp_hit-from>
1524 <Hsp_hit-to>27</Hsp_hit-to>
1525 <Hsp_query-frame>1</Hsp_query-frame>
1526 <Hsp_hit-frame>1</Hsp_hit-frame>
1527 <Hsp_identity>8</Hsp_identity>
1528 <Hsp_positive>12</Hsp_positive>
1529 <Hsp_align-len>21</Hsp_align-len>
1530 <Hsp_qseq>LLAREGRNNVVKLSAKPADSL</Hsp_qseq>
1531 <Hsp_hseq>LLARENENNPIRVGVIGAGQM</Hsp_hseq>
1532 <Hsp_midline>LLARE NN +++ A +</Hsp_midline>
1533 </Hsp>
1534 </Hit_hsps>
1535 </Hit>
1536 <Hit>
1537 <Hit_num>10</Hit_num>
1538 <Hit_id>gi|16410942|emb|CAC99591.1|</Hit_id>
1539 <Hit_def>lmo1513 [Listeria monocytogenes]</Hit_def>
1540 <Hit_accession>CAC99591</Hit_accession>
1541 <Hit_len>382</Hit_len>
1542 <Hit_hsps>
1543 <Hsp>
1544 <Hsp_num>1</Hsp_num>
1545 <Hsp_bit-score>26.851</Hsp_bit-score>
1546 <Hsp_score>58</Hsp_score>
1547 <Hsp_evalue>1.59839</Hsp_evalue>
1548 <Hsp_query-from>107</Hsp_query-from>
1549 <Hsp_query-to>126</Hsp_query-to>
1550 <Hsp_hit-from>277</Hsp_hit-from>
1551 <Hsp_hit-to>296</Hsp_hit-to>
1552 <Hsp_query-frame>1</Hsp_query-frame>
1553 <Hsp_hit-frame>1</Hsp_hit-frame>
1554 <Hsp_identity>10</Hsp_identity>
1555 <Hsp_positive>15</Hsp_positive>
1556 <Hsp_align-len>20</Hsp_align-len>
1557 <Hsp_qseq>RSGKAEFNLNGLDADEYPHL</Hsp_qseq>
1558 <Hsp_hseq>RSAELDFEVNGLEADTLPHV</Hsp_hseq>
1559 <Hsp_midline>RS + +F +NGL+AD PH+</Hsp_midline>
1560 </Hsp>
1561 </Hit_hsps>
1562 </Hit>
1563 <Hit>
1564 <Hit_num>11</Hit_num>
1565 <Hit_id>gi|16412324|emb|CAD01037.1|</Hit_id>
1566 <Hit_def>lmo2824 [Listeria monocytogenes]</Hit_def>
1567 <Hit_accession>CAD01037</Hit_accession>
1568 <Hit_len>395</Hit_len>
1569 <Hit_hsps>
1570 <Hsp>
1571 <Hsp_num>1</Hsp_num>
1572 <Hsp_bit-score>26.851</Hsp_bit-score>
1573 <Hsp_score>58</Hsp_score>
1574 <Hsp_evalue>1.72304</Hsp_evalue>
1575 <Hsp_query-from>144</Hsp_query-from>
1576 <Hsp_query-to>170</Hsp_query-to>
1577 <Hsp_hit-from>84</Hsp_hit-from>
1578 <Hsp_hit-to>110</Hsp_hit-to>
1579 <Hsp_query-frame>1</Hsp_query-frame>
1580 <Hsp_hit-frame>1</Hsp_hit-frame>
1581 <Hsp_identity>10</Hsp_identity>
1582 <Hsp_positive>13</Hsp_positive>
1583 <Hsp_align-len>27</Hsp_align-len>
1584 <Hsp_qseq>NLIRQTVFAVSASETRPILTGVNWKVE</Hsp_qseq>
1585 <Hsp_hseq>NAVKELVLASLFVSARPILEGTEWVKE</Hsp_hseq>
1586 <Hsp_midline>N +++ V A RPIL G W E</Hsp_midline>
1587 </Hsp>
1588 </Hit_hsps>
1589 </Hit>
1590 <Hit>
1591 <Hit_num>12</Hit_num>
1592 <Hit_id>gi|16410572|emb|CAC99234.1|</Hit_id>
1593 <Hit_def>lmo1156 [Listeria monocytogenes]</Hit_def>
1594 <Hit_accession>CAC99234</Hit_accession>
1595 <Hit_len>606</Hit_len>
1596 <Hit_hsps>
1597 <Hsp>
1598 <Hsp_num>1</Hsp_num>
1599 <Hsp_bit-score>26.4658</Hsp_bit-score>
1600 <Hsp_score>57</Hsp_score>
1601 <Hsp_evalue>2.25036</Hsp_evalue>
1602 <Hsp_query-from>75</Hsp_query-from>
1603 <Hsp_query-to>141</Hsp_query-to>
1604 <Hsp_hit-from>450</Hsp_hit-from>
1605 <Hsp_hit-to>512</Hsp_hit-to>
1606 <Hsp_query-frame>1</Hsp_query-frame>
1607 <Hsp_hit-frame>1</Hsp_hit-frame>
1608 <Hsp_identity>16</Hsp_identity>
1609 <Hsp_positive>30</Hsp_positive>
1610 <Hsp_gaps>4</Hsp_gaps>
1611 <Hsp_align-len>67</Hsp_align-len>
1612 <Hsp_qseq>IVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDL</Hsp_qseq>
1613 <Hsp_hseq>IGLEDRYLAEDIKKYPLAKVE----SIFHIRHEDGTVQFFDTPLSPTVFAKVVIVKPDGFVPIPGDV</Hsp_hseq>
1614 <Hsp_midline>I L+ R+ +E +KK P+A VE + + G +F L + + ++ + IP D+</Hsp_midline>
1615 </Hsp>
1616 </Hit_hsps>
1617 </Hit>
1618 <Hit>
1619 <Hit_num>13</Hit_num>
1620 <Hit_id>gi|16411268|emb|CAC99892.1|</Hit_id>
1621 <Hit_def>lmo1814 [Listeria monocytogenes]</Hit_def>
1622 <Hit_accession>CAC99892</Hit_accession>
1623 <Hit_len>552</Hit_len>
1624 <Hit_hsps>
1625 <Hsp>
1626 <Hsp_num>1</Hsp_num>
1627 <Hsp_bit-score>26.4658</Hsp_bit-score>
1628 <Hsp_score>57</Hsp_score>
1629 <Hsp_evalue>2.28823</Hsp_evalue>
1630 <Hsp_query-from>211</Hsp_query-from>
1631 <Hsp_query-to>238</Hsp_query-to>
1632 <Hsp_hit-from>495</Hsp_hit-from>
1633 <Hsp_hit-to>522</Hsp_hit-to>
1634 <Hsp_query-frame>1</Hsp_query-frame>
1635 <Hsp_hit-frame>1</Hsp_hit-frame>
1636 <Hsp_identity>11</Hsp_identity>
1637 <Hsp_positive>18</Hsp_positive>
1638 <Hsp_align-len>28</Hsp_align-len>
1639 <Hsp_qseq>LSKILDDNQELVDIVITETQVLFKAKNV</Hsp_qseq>
1640 <Hsp_hseq>LEKLLDDDSEIVTIIVGEDSDTTKAETL</Hsp_hseq>
1641 <Hsp_midline>L K+LDD+ E+V I++ E KA+ +</Hsp_midline>
1642 </Hsp>
1643 </Hit_hsps>
1644 </Hit>
1645 <Hit>
1646 <Hit_num>14</Hit_num>
1647 <Hit_id>gi|16412064|emb|CAD00654.1|</Hit_id>
1648 <Hit_def>peptidoglycan anchored protein (LPXTG motif) [Listeria monocytogenes]</Hit_def>
1649 <Hit_accession>CAD00654</Hit_accession>
1650 <Hit_len>1530</Hit_len>
1651 <Hit_hsps>
1652 <Hsp>
1653 <Hsp_num>1</Hsp_num>
1654 <Hsp_bit-score>26.0806</Hsp_bit-score>
1655 <Hsp_score>56</Hsp_score>
1656 <Hsp_evalue>2.68132</Hsp_evalue>
1657 <Hsp_query-from>250</Hsp_query-from>
1658 <Hsp_query-to>307</Hsp_query-to>
1659 <Hsp_hit-from>1270</Hsp_hit-from>
1660 <Hsp_hit-to>1322</Hsp_hit-to>
1661 <Hsp_query-frame>1</Hsp_query-frame>
1662 <Hsp_hit-frame>1</Hsp_hit-frame>
1663 <Hsp_identity>17</Hsp_identity>
1664 <Hsp_positive>27</Hsp_positive>
1665 <Hsp_gaps>9</Hsp_gaps>
1666 <Hsp_align-len>60</Hsp_align-len>
1667 <Hsp_qseq>PDTTS--LIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSP</Hsp_qseq>
1668 <Hsp_hseq>PDAGSVKIIKQDSENGVRLAGAEF-------SLIAENGETLQTNLKTDEAGELEVNNLAP</Hsp_hseq>
1669 <Hsp_midline>PD S +I Q+S+ + + EF SL+A G L A LE+++ +P</Hsp_midline>
1670 </Hsp>
1671 </Hit_hsps>
1672 </Hit>
1673 <Hit>
1674 <Hit_num>15</Hit_num>
1675 <Hit_id>gi|16411702|emb|CAD00310.1|</Hit_id>
1676 <Hit_def>lmo2232 [Listeria monocytogenes]</Hit_def>
1677 <Hit_accession>CAD00310</Hit_accession>
1678 <Hit_len>434</Hit_len>
1679 <Hit_hsps>
1680 <Hsp>
1681 <Hsp_num>1</Hsp_num>
1682 <Hsp_bit-score>26.0806</Hsp_bit-score>
1683 <Hsp_score>56</Hsp_score>
1684 <Hsp_evalue>2.86641</Hsp_evalue>
1685 <Hsp_query-from>118</Hsp_query-from>
1686 <Hsp_query-to>146</Hsp_query-to>
1687 <Hsp_hit-from>346</Hsp_hit-from>
1688 <Hsp_hit-to>377</Hsp_hit-to>
1689 <Hsp_query-frame>1</Hsp_query-frame>
1690 <Hsp_hit-frame>1</Hsp_hit-frame>
1691 <Hsp_identity>10</Hsp_identity>
1692 <Hsp_positive>19</Hsp_positive>
1693 <Hsp_gaps>3</Hsp_gaps>
1694 <Hsp_align-len>32</Hsp_align-len>
1695 <Hsp_qseq>LDADEYPHLPQIEEHHAI---QIPTDLLKNLI</Hsp_qseq>
1696 <Hsp_hseq>FDADEIPEIRKIKDGHYIVDAKLLIDEVNNIL</Hsp_hseq>
1697 <Hsp_midline> DADE P + +I++ H I ++ D + N++</Hsp_midline>
1698 </Hsp>
1699 </Hit_hsps>
1700 </Hit>
1701 <Hit>
1702 <Hit_num>16</Hit_num>
1703 <Hit_id>gi|16410089|emb|CAC98778.1|</Hit_id>
1704 <Hit_def>lmo0700 [Listeria monocytogenes]</Hit_def>
1705 <Hit_accession>CAC98778</Hit_accession>
1706 <Hit_len>515</Hit_len>
1707 <Hit_hsps>
1708 <Hsp>
1709 <Hsp_num>1</Hsp_num>
1710 <Hsp_bit-score>26.0806</Hsp_bit-score>
1711 <Hsp_score>56</Hsp_score>
1712 <Hsp_evalue>2.91464</Hsp_evalue>
1713 <Hsp_query-from>129</Hsp_query-from>
1714 <Hsp_query-to>231</Hsp_query-to>
1715 <Hsp_hit-from>360</Hsp_hit-from>
1716 <Hsp_hit-to>461</Hsp_hit-to>
1717 <Hsp_query-frame>1</Hsp_query-frame>
1718 <Hsp_hit-frame>1</Hsp_hit-frame>
1719 <Hsp_identity>24</Hsp_identity>
1720 <Hsp_positive>49</Hsp_positive>
1721 <Hsp_gaps>13</Hsp_gaps>
1722 <Hsp_align-len>109</Hsp_align-len>
1723 <Hsp_qseq>IEEHHAIQI--PTDL---LKNLIRQTVFAVSASETRPILTGVNWK-VENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQV</Hsp_qseq>
1724 <Hsp_hseq>IEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKE----ATTPAEIIEPEKPAE-PI--KHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKV</Hsp_hseq>
1725 <Hsp_midline>IEE +++ P ++ LK + Q +A E ++ G+ K V E AT + + + P + V+ ++L+E+ +IL+D +++V +V</Hsp_midline>
1726 </Hsp>
1727 </Hit_hsps>
1728 </Hit>
1729 <Hit>
1730 <Hit_num>17</Hit_num>
1731 <Hit_id>gi|16409997|emb|CAC98686.1|</Hit_id>
1732 <Hit_def>lmo0608 [Listeria monocytogenes]</Hit_def>
1733 <Hit_accession>CAC98686</Hit_accession>
1734 <Hit_len>605</Hit_len>
1735 <Hit_hsps>
1736 <Hsp>
1737 <Hsp_num>1</Hsp_num>
1738 <Hsp_bit-score>25.6954</Hsp_bit-score>
1739 <Hsp_score>55</Hsp_score>
1740 <Hsp_evalue>3.68169</Hsp_evalue>
1741 <Hsp_query-from>66</Hsp_query-from>
1742 <Hsp_query-to>119</Hsp_query-to>
1743 <Hsp_hit-from>188</Hsp_hit-from>
1744 <Hsp_hit-to>249</Hsp_hit-to>
1745 <Hsp_query-frame>1</Hsp_query-frame>
1746 <Hsp_hit-frame>1</Hsp_hit-frame>
1747 <Hsp_identity>17</Hsp_identity>
1748 <Hsp_positive>27</Hsp_positive>
1749 <Hsp_gaps>8</Hsp_gaps>
1750 <Hsp_align-len>62</Hsp_align-len>
1751 <Hsp_qseq>IVTIDQPGSIVLQA-------RFFSEIVKKLPMATVEIEVQNQYLTIIRS-GKAEFNLNGLD</Hsp_qseq>
1752 <Hsp_hseq>IVLVTVPISIILVAIIAGRSQRYFGAQQRNLGILNDTVEETYGGQTIIKAFGQEKKTLVKFD</Hsp_hseq>
1753 <Hsp_midline>IV + P SI+L A R+F + L + +E TII++ G+ + L D</Hsp_midline>
1754 </Hsp>
1755 </Hit_hsps>
1756 </Hit>
1757 <Hit>
1758 <Hit_num>18</Hit_num>
1759 <Hit_id>gi|16410039|emb|CAC98728.1|</Hit_id>
1760 <Hit_def>lmo0650 [Listeria monocytogenes]</Hit_def>
1761 <Hit_accession>CAC98728</Hit_accession>
1762 <Hit_len>896</Hit_len>
1763 <Hit_hsps>
1764 <Hsp>
1765 <Hsp_num>1</Hsp_num>
1766 <Hsp_bit-score>25.3102</Hsp_bit-score>
1767 <Hsp_score>54</Hsp_score>
1768 <Hsp_evalue>4.53564</Hsp_evalue>
1769 <Hsp_query-from>291</Hsp_query-from>
1770 <Hsp_query-to>317</Hsp_query-to>
1771 <Hsp_hit-from>228</Hsp_hit-from>
1772 <Hsp_hit-to>254</Hsp_hit-to>
1773 <Hsp_query-frame>1</Hsp_query-frame>
1774 <Hsp_hit-frame>1</Hsp_hit-frame>
1775 <Hsp_identity>10</Hsp_identity>
1776 <Hsp_positive>15</Hsp_positive>
1777 <Hsp_align-len>27</Hsp_align-len>
1778 <Hsp_qseq>KLSAKPADSLEISSNSPEIGKVVEAVL</Hsp_qseq>
1779 <Hsp_hseq>ELKAKANQVVELNEKIPELNKATENVL</Hsp_hseq>
1780 <Hsp_midline>+L AK +E++ PE+ K E VL</Hsp_midline>
1781 </Hsp>
1782 </Hit_hsps>
1783 </Hit>
1784 <Hit>
1785 <Hit_num>19</Hit_num>
1786 <Hit_id>gi|16411502|emb|CAD00110.1|</Hit_id>
1787 <Hit_def>ftsZ [Listeria monocytogenes]</Hit_def>
1788 <Hit_accession>CAD00110</Hit_accession>
1789 <Hit_len>391</Hit_len>
1790 <Hit_hsps>
1791 <Hsp>
1792 <Hsp_num>1</Hsp_num>
1793 <Hsp_bit-score>24.925</Hsp_bit-score>
1794 <Hsp_score>53</Hsp_score>
1795 <Hsp_evalue>6.28001</Hsp_evalue>
1796 <Hsp_query-from>251</Hsp_query-from>
1797 <Hsp_query-to>296</Hsp_query-to>
1798 <Hsp_hit-from>159</Hsp_hit-from>
1799 <Hsp_hit-to>204</Hsp_hit-to>
1800 <Hsp_query-frame>1</Hsp_query-frame>
1801 <Hsp_hit-frame>1</Hsp_hit-frame>
1802 <Hsp_identity>14</Hsp_identity>
1803 <Hsp_positive>21</Hsp_positive>
1804 <Hsp_align-len>46</Hsp_align-len>
1805 <Hsp_qseq>DTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKP</Hsp_qseq>
1806 <Hsp_hseq>DTLIVIPNDRLLQIVDKNTPMLEAFREADNVLRQGVQGISDLIAVP</Hsp_hseq>
1807 <Hsp_midline>DT +IP + +IV L+A A + R+G + L A P</Hsp_midline>
1808 </Hsp>
1809 </Hit_hsps>
1810 </Hit>
1811 </Iteration_hits>
1812 <Iteration_stat>
1813 <Statistics>
1814 <Statistics_db-num>2846</Statistics_db-num>
1815 <Statistics_db-len>870878</Statistics_db-len>
1816 <Statistics_hsp-len>82</Statistics_hsp-len>
1817 <Statistics_eff-space>1.88702e+08</Statistics_eff-space>
1818 <Statistics_kappa>0.0450367</Statistics_kappa>
1819 <Statistics_lambda>0.267</Statistics_lambda>
1820 <Statistics_entropy>0.14</Statistics_entropy>
1821 </Statistics>
1822 </Iteration_stat>
1823 <Iteration_message>CONVERGED</Iteration_message>
1824 </Iteration>
1825 </BlastOutput_iterations>
1826 </BlastOutput>