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1 LOCUS NC_008536 2001 bp DNA linear BCT 21-JUL-2008
2 DEFINITION Solibacter usitatus Ellin6076, complete genome.
3 ACCESSION NC_008536 REGION: 1000..3000
4 VERSION NC_008536.1 GI:116619145
5 PROJECT GenomeProject:12638
6 KEYWORDS .
7 SOURCE Solibacter usitatus Ellin6076
8 ORGANISM Solibacter usitatus Ellin6076
9 Bacteria; Acidobacteria; Solibacteres; Solibacterales;
10 Solibacteraceae; Solibacter.
11 REFERENCE 1 (bases 1 to 2001)
12 AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
13 del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
14 Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
15 Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
16 Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
17 CONSRTM US DOE Joint Genome Institute
18 TITLE Complete sequence of Solibacter usitatus Ellin6076
19 JOURNAL Unpublished
20 REFERENCE 2 (bases 1 to 2001)
21 CONSRTM NCBI Genome Project
22 TITLE Direct Submission
23 JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
24 Information, NIH, Bethesda, MD 20894, USA
25 REFERENCE 3 (bases 1 to 2001)
26 AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
27 del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
28 Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
29 Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
30 Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
31 CONSRTM US DOE Joint Genome Institute
32 TITLE Direct Submission
33 JOURNAL Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
34 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
35 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
36 NCBI review. The reference sequence was derived from CP000473.
37 URL -- http://www.jgi.doe.gov
38 JGI Project ID: 3634513
39 Source DNA and bacteria available from Cheryl R. Kuske
40 (kuske@lanl.gov)
41 Contacts: Cheryl R. Kuske (kuske@lanl.gov)
42 Paul Richardson (microbes@cuba.jgi-psf.org)
43 Quality assurance done by JGI-Stanford
44 Annotation done by JGI-ORNL and JGI-PGF
45 Finishing done by JGI-LANL
46 Finished microbial genomes have been curated to close all gaps with
47 greater than 98% coverage of at least two independent clones. Each
48 base pair has a minimum q (quality) value of 30 and the total error
49 rate is less than one per 50000.
50 The JGI and collaborators endorse the principles for the
51 distribution and use of large scale sequencing data adopted by the
52 larger genome sequencing community and urge users of this data to
53 follow them. It is our intention to publish the work of this
54 project in a timely fashion and we welcome collaborative
55 interaction on the project and analysis.
56 (http://www.genome.gov/page.cfm?pageID=10506376).
57 COMPLETENESS: full length.
58 FEATURES Location/Qualifiers
59 source 1..2001
60 /organism="Solibacter usitatus Ellin6076"
61 /mol_type="genomic DNA"
62 /strain="Ellin6076"
63 /db_xref="taxon:234267"
64 gene <1..403
65 /locus_tag="Acid_0001"
66 /db_xref="GeneID:4431688"
67 CDS <1..403
68 /locus_tag="Acid_0001"
69 /note="KEGG: aba:Acid345_0001 chromosomal replication
70 initiator protein DnaA
71 TIGRFAM: chromosomal replication initiator protein DnaA
72 PFAM: Chromosomal replication initiator, DnaA C-terminal
73 domain; Chromosomal replication initiator, DnaA
74 SMART: AAA ATPase"
75 /codon_start=1
76 /transl_table=11
77 /product="chromosomal replication initiator protein DnaA"
78 /protein_id="YP_821302.1"
79 /db_xref="GI:116619146"
80 /db_xref="InterPro:IPR001957"
81 /db_xref="InterPro:IPR003593"
82 /db_xref="InterPro:IPR013159"
83 /db_xref="InterPro:IPR013317"
84 /db_xref="GeneID:4431688"
85 /translation="MNYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDR
86 ETRAWLETEYTQLIQGGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV
87 LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQL
88 IDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQ
89 EEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI
90 LDKKAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVL
91 KHLVHVQDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNAS
92 LPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ"
93 gene 638..1756
94 /locus_tag="Acid_0002"
95 /db_xref="GeneID:4431689"
96 CDS 638..1756
97 /locus_tag="Acid_0002"
98 /EC_number="2.7.7.7"
99 /note="KEGG: aba:Acid345_0002 DNA polymerase III, beta
100 subunit
101 TIGRFAM: DNA polymerase III, beta subunit
102 PFAM: DNA polymerase III, beta chain"
103 /codon_start=1
104 /transl_table=11
105 /product="DNA polymerase III, beta subunit"
106 /protein_id="YP_821303.1"
107 /db_xref="GI:116619147"
108 /db_xref="InterPro:IPR001001"
109 /db_xref="GeneID:4431689"
110 /translation="MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITL
111 TATDLELGIRCSCPARVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGR
112 SRTRIAGMSRESFPELPQMPEPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLM
113 RPEGLTMVATDGHRLAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAI
114 VAGDDNHLFFQIGHRLLITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQF
115 ADERSRAIRVQFNSGEVRVFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAI
116 SQDHVAFELKDQKSAGELRPAGDAIADQYRYVVMPMRI"
117 gene 1782..>2001
118 /locus_tag="Acid_0003"
119 /db_xref="GeneID:4431690"
120 CDS 1782..>2001
121 /locus_tag="Acid_0003"
122 /EC_number="5.99.1.3"
123 /note="KEGG: aba:Acid345_0008 DNA gyrase, B subunit
124 TIGRFAM: DNA gyrase, B subunit
125 PFAM: DNA gyrase, subunit B domain protein; ATP-binding
126 region, ATPase domain protein domain protein; TOPRIM
127 domain protein; DNA topoisomerase, type IIA, subunit B,
128 region 2 domain protein
129 SMART: DNA topoisomerase II"
130 /codon_start=1
131 /transl_table=11
132 /product="DNA gyrase subunit B"
133 /protein_id="YP_821304.1"
134 /db_xref="GI:116619148"
135 /db_xref="InterPro:IPR000565"
136 /db_xref="InterPro:IPR001241"
137 /db_xref="InterPro:IPR002288"
138 /db_xref="InterPro:IPR003594"
139 /db_xref="InterPro:IPR006171"
140 /db_xref="InterPro:IPR011557"
141 /db_xref="InterPro:IPR011558"
142 /db_xref="InterPro:IPR013506"
143 /db_xref="GeneID:4431690"
144 /translation="MPNEVNPVGGNGNVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMG
145 LHHLVYEVVDNSVDEALAGYATHIEVTIHDDNSVTVEDDGRGIPVGIHEEEGVSAAQV
146 VMTKLHAGGKFDSNSYKVSGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPK
147 ADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNYDTLAQRLRELAFLNKGLKITLTDER
148 VDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYND
149 AYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFGQKNGLFKDVKENLSGDDVREG
150 LTAVVSVKVPQPQFEGQTKGKLNSDIAGYMTQFVNDKLSEYFDKNSAVGRKIVGKAIE
151 ASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKLCELFLVEGESAGGTAKQG
152 RERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTGIGKDDFDVAKLRYDKI
153 IIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRIKKGKSEKYIKDEKE
154 FTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQIFHKVERRLRDS
155 RAVDVLTNVDLHVDNKAEFQVEANLKPVFEAMKAKGLNPQMKKDEEHSAWAVVFHDST
156 GAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDWVELLEYVKNE
157 GKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFSTLMGEDVES
158 RRKFIEENALDVKNLDV"
159 ORIGIN
160 1 ccgcgaactc gaaggcgccc tggttaaatt gatcgcgtac tcctccctca ccggaacgcc
161 61 gatccacctg cagatggcgc aacaggtcct gaagcacctg gtccacgtgc aggaccgccg
162 121 cgtcaccatg gattccatcc aaaaggccgt cgcggagaaa ttcagcatta agcagtccca
163 181 gctcaaggaa aagagcaata ccaagaaggt ggtctatccg cggcaggtgg caatgtacct
164 241 ggtcaaggag ctcaccaacg cgtcgctacc tgagatcggg cgcgctttcg gcggaaagca
165 301 tcacaccacc gtgatccact cgatcaacaa aatcgagaag gatcgccaga gcgaccctga
166 361 attgaacagg ttactacaca gcctaatgga ctcattacaa tgaccttcca ccgttttcca
167 421 caattgccct tgcaccgggc atggggaaat ctgtgtatat cgcatgacag cgttggtttt
168 481 gcgcaatttt ccgcgccgca atccgcagct tgacgtagca gaaagtggct gagtttagta
169 541 taatttagat agtcttcaac actttgcaca gggcctatga atacggttat ttatcaggcc
170 601 tatctataga gacagcaaag aactaggagc cgtgggcatg gaattcaccg tcagcaagag
171 661 cgatctggta cgtgagctga gtctctcgca gggtgtggtg gaaaaaaaga ccaccattcc
172 721 aatcctgtcg aacgtgctcc tggaggccgc ggacgatcgc attacgttga ctgcgaccga
173 781 cctggaactg ggcatccgct gttcttgccc ggcgcgcgtc aagaaagaag ggtccggcac
174 841 ggtgccggcg cgcaaactgc tcgattacat gcgtctgttg cccgaaggcg acgtgaacat
175 901 gaagttcctg gacaatcact gggccagtat caccagcgga cgttctcgca ccaggattgc
176 961 gggcatgtcg cgcgagagct tccccgaact gccgcagatg ccggagccga tcgcgcaggt
177 1021 gcccgtcaaa acgctggcct ccatgatcgc ccgtacgtcc ttcgccatct ccatggagga
178 1081 gtcgcgcttt acgctcaacg gcgcgctcct gctgatgcgc cccgaaggcc tcaccatggt
179 1141 cgccaccgat ggccaccgcc tcgcctacgt gcaggccgag cccgcggaga gcggcagcgc
180 1201 cgacaaaccc ttccgcgccc tcgtccccaa gaaggcgatg agcgaattga ccaagctcag
181 1261 cgatgatgcc ggcgaaggcg ccatggccat cgtcgccggt gatgacaatc acctgttctt
182 1321 ccaaattggc caccgcctgc tgatcacgcg aaagctcacc ggcaacttcc cggattacga
183 1381 gcgcgtcttg cccaaagatc accagttcat ggccaagctc gagaagggcg aaatccgctc
184 1441 ggcaatcgaa cgcgtggcgc agttcgccga tgaacggtcg cgcgccattc gggtgcaatt
185 1501 caacagcggc gaagtccgcg tcttcagttc cagcgtcgaa accggcgaga gcgaagagag
186 1561 cgttcccgcc gagtacacgg gtcccgatat cgagatcggt ttcaatgccc aatacctgct
187 1621 cgatttcctg cgtgcgattt ctcaggatca cgttgccttc gaattgaagg atcaaaaaag
188 1681 cgcgggcgaa ctccgtcccg ccggcgatgc catcgcggac cagtaccgct atgtagtcat
189 1741 gccgatgcgt atttgaagtt tagtcaaacc agtaaggaac tatgccaaac gaagtcaatc
190 1801 ccgtcggggg aaatggaaac gtctacgatt ccagcagtat caaagtcctg gaaggcctcg
191 1861 aagcagtgcg cctgcgccct gccatgtaca tcgggtctac aggcgagatg gggctgcacc
192 1921 atctggtcta tgaggtcgtc gataattccg tcgatgaagc tctagccggc tacgccaccc
193 1981 atatcgaggt gacgatccac g
194 //