| blob | a74403fce26c6e3293243af023694c422888dece |
1 BioPerl Dependencies
3 NOTE : This file was auto-generated by the helper script
4 maintenance/dependencies.pl. Do not edit directly!
6 The following packages are used by BioPerl. While not all are required for
7 BioPerl to operate properly, some functionality will be missing without them.
8 You can easily choose to install all of these during the normal installation
9 process. Note that the PPM version of the BioPerl packages always tries to
10 install all dependencies.
12 The DBD::mysql, DB_File and XML::Parser modules require other applications or
13 databases: MySQL, Berkeley DB, and expat respectively.
15 NB: This list of packages is not authoritative. See the 'requires',
16 'build_requires' and 'recommends' sections of Build.PL instead.
18 ==============================================================================
19 | Distribution | Module used - Description | Min. ver. |
20 |---------------------------+--------------------------------------+-----------|
21 | AcePerl | * Ace - Interface to ACEDB (Popular | None |
22 | | Genome DB) | |
23 | | * Ace::Sequence::Homol - NA | |
24 |==============================================================================|
25 | Used by: |
26 |------------------------------------------------------------------------------|
27 | * Bio::DB::Ace - Ace |
28 | * Bio::DB::GFF::Adaptor::ace - Ace |
29 | * Bio::DB::GFF::Adaptor::dbi::mysqlace - Ace::Sequence::Homol |
30 | * Bio::DB::GFF::Adaptor::dbi::oracleace - Ace::Sequence::Homol |
31 ==============================================================================
32 ==============================================================================
33 | Distribution | Module used - Description | Min. ver. |
34 |---------------------------+--------------------------------------+-----------|
35 | Algorithm-Munkres | * Algorithm::Munkres - Solution to | None |
36 | | classical Assignment Problem | |
37 |==============================================================================|
38 | Used by: |
39 |------------------------------------------------------------------------------|
40 | * Bio::PhyloNetwork - Algorithm::Munkres |
41 ==============================================================================
42 ==============================================================================
43 | Distribution | Module used - Description | Min. ver. |
44 |---------------------------+--------------------------------------+-----------|
45 | Archive-Tar | * Archive::Tar - Read, write and | None |
46 | | manipulate tar files | |
47 |==============================================================================|
48 | Used by: |
49 |------------------------------------------------------------------------------|
50 | * Bio::Root::Build - Archive::Tar |
51 ==============================================================================
52 ==============================================================================
53 | Distribution | Module used - Description | Min. ver. |
54 |---------------------------+--------------------------------------+-----------|
55 | Array-Compare | * Array::Compare - Class to compare | None |
56 | | two arrays | |
57 |==============================================================================|
58 | Used by: |
59 |------------------------------------------------------------------------------|
60 | * Bio::PhyloNetwork - Array::Compare |
61 ==============================================================================
62 ==============================================================================
63 | Distribution | Module used - Description | Min. ver. |
64 |---------------------------+--------------------------------------+-----------|
65 | Bio-ASN1-EntrezGene | * Bio::ASN1::EntrezGene - Parser | None |
66 | | for NCBI Entrez Gene (ASN.1- | |
67 | | format) | |
68 |==============================================================================|
69 | Used by: |
70 |------------------------------------------------------------------------------|
71 | * Bio::SeqIO::entrezgene - Bio::ASN1::EntrezGene |
72 ==============================================================================
73 ==============================================================================
74 | Distribution | Module used - Description | Min. ver. |
75 |---------------------------+--------------------------------------+-----------|
76 | Compress-Zlib | * Compress::Zlib - Interface to | None |
77 | | zlib compression library | |
78 |==============================================================================|
79 | Used by: |
80 |------------------------------------------------------------------------------|
81 | * Bio::DB::SeqFeature::Store - Compress::Zlib |
82 ==============================================================================
83 ==============================================================================
84 | Distribution | Module used - Description | Min. ver. |
85 |---------------------------+--------------------------------------+-----------|
86 | Convert-Binary-C | * Convert::Binary::C - Binary Data | None |
87 | | Conversion using C Types | |
88 |==============================================================================|
89 | Used by: |
90 |------------------------------------------------------------------------------|
91 | * Bio::SeqIO::strider - Convert::Binary::C |
92 ==============================================================================
93 ==============================================================================
94 | Distribution | Module used - Description | Min. ver. |
95 |---------------------------+--------------------------------------+-----------|
96 | DBI | * DBI - Generic Database Interface | None |
97 | | (see DBD modules) | |
98 |==============================================================================|
99 | Used by: |
100 |------------------------------------------------------------------------------|
101 | * Bio::DB::GFF::Adaptor::dbi - DBI |
102 | * Bio::DB::GFF::Adaptor::dbi::caching_handle - DBI |
103 | * Bio::DB::SeqFeature::Store::DBI::mysql - DBI |
104 | * Bio::DB::SeqFeature::Store::DBI::Pg - DBI |
105 ==============================================================================
106 ==============================================================================
107 | Distribution | Module used - Description | Min. ver. |
108 |---------------------------+--------------------------------------+-----------|
109 | Data-Stag | * Data::Stag - NA | None |
110 | | * Data::Stag::XMLWriter - NA | |
111 |==============================================================================|
112 | Used by: |
113 |------------------------------------------------------------------------------|
114 | * Bio::Annotation::TagTree - Data::Stag |
115 | * Bio::SeqIO::chaosxml - Data::Stag::XMLWriter |
116 ==============================================================================
117 ==============================================================================
118 | Distribution | Module used - Description | Min. ver. |
119 |---------------------------+--------------------------------------+-----------|
120 | Graph | * Graph::Directed - NA | None |
121 | | * Graph::Undirected - NA | None |
122 |==============================================================================|
123 | Used by: |
124 |------------------------------------------------------------------------------|
125 | * Bio::PhyloNetwork - Graph::Directed |
126 | * Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph::Directed |
127 | * Bio::Assembly::Tools::ContigSpectrum - Graph::Undirected |
128 ==============================================================================
129 ==============================================================================
130 | Distribution | Module used - Description | Min. ver. |
131 |---------------------------+--------------------------------------+-----------|
132 | HTML-Parser | * HTML::HeadParser - Parse <HEAD> | None |
133 | | section of HTML documents | |
134 |==============================================================================|
135 | Used by: |
136 |------------------------------------------------------------------------------|
137 | * Bio::Tools::Analysis::DNA::ESEfinder - HTML::HeadParser |
138 | * Bio::Tools::Analysis::Protein::ELM - HTML::HeadParser |
139 ==============================================================================
140 ==============================================================================
141 | Distribution | Module used - Description | Min. ver. |
142 |---------------------------+--------------------------------------+-----------|
143 | IO-String | * IO::String - IO::File interface | None |
144 | | for in-core strings | |
145 |==============================================================================|
146 | Used by: |
147 |------------------------------------------------------------------------------|
148 | * Bio::PhyloNetwork - IO::String |
149 | * Bio::DB::CUTG - IO::String |
150 | * Bio::DB::WebDBSeqI - IO::String |
151 | * Bio::Index::Blast - IO::String |
152 | * Bio::Index::BlastTable - IO::String |
153 | * Bio::Index::Hmmer - IO::String |
154 | * Bio::SearchIO::Writer::BSMLResultWriter - IO::String |
155 | * Bio::SeqIO::game::gameWriter - IO::String |
156 | * Bio::Tools::Analysis::DNA::ESEfinder - IO::String |
157 | * Bio::Tools::Analysis::Protein::Domcut - IO::String |
158 | * Bio::Tools::Analysis::Protein::ELM - IO::String |
159 | * Bio::Tools::Analysis::Protein::GOR4 - IO::String |
160 | * Bio::Tools::Analysis::Protein::HNN - IO::String |
161 | * Bio::Tools::Analysis::Protein::NetPhos - IO::String |
162 | * Bio::Tools::Analysis::Protein::Scansite - IO::String |
163 | * Bio::Tools::Analysis::Protein::Sopma - IO::String |
164 | * Bio::Tools::Phylo::Molphy - IO::String |
165 | * Bio::Tools::Phylo::PAML - IO::String |
166 | * Bio::Tools::Run::RemoteBlast - IO::String |
167 | * Bio::TreeIO::cluster - IO::String |
168 | * Bio::TreeIO::nexus - IO::String |
169 | * Bio::Variation::IO::xml - IO::String |
170 ==============================================================================
171 ==============================================================================
172 | Distribution | Module used - Description | Min. ver. |
173 |---------------------------+--------------------------------------+-----------|
174 | Math-Random | * Math::Random - Random Number | None |
175 | | Generators | |
176 |==============================================================================|
177 | Used by: |
178 |------------------------------------------------------------------------------|
179 | * Bio::PhyloNetwork::RandomFactory - Math::Random |
180 ==============================================================================
181 ==============================================================================
182 | Distribution | Module used - Description | Min. ver. |
183 |---------------------------+--------------------------------------+-----------|
184 | Memoize | * Memoize - Automatically cache | None |
185 | | results of functions | |
186 |==============================================================================|
187 | Used by: |
188 |------------------------------------------------------------------------------|
189 | * Bio::DB::SeqFeature::Store::DBI::mysql - Memoize |
190 | * Bio::DB::SeqFeature::Store::DBI::Pg - Memoize |
191 ==============================================================================
192 ==============================================================================
193 | Distribution | Module used - Description | Min. ver. |
194 |---------------------------+--------------------------------------+-----------|
195 | Module-Build | * Module::Build - Build, test, and | 0.2805 |
196 | | install Perl modules | |
197 | | * Module::Build::PPMMaker - NA | |
198 |==============================================================================|
199 | Used by: |
200 |------------------------------------------------------------------------------|
201 | * Bio::Root::Build - Module::Build |
202 | * Bio::Root::Test - Module::Build |
203 | * Bio::Root::Build - Module::Build::PPMMaker |
204 ==============================================================================
205 ==============================================================================
206 | Distribution | Module used - Description | Min. ver. |
207 |---------------------------+--------------------------------------+-----------|
208 | PostScript | * PostScript::TextBlock - Objects | None |
209 | | used by PS::Document | |
210 |==============================================================================|
211 | Used by: |
212 |------------------------------------------------------------------------------|
213 | * Bio::Tree::Draw::Cladogram - PostScript::TextBlock |
214 ==============================================================================
215 ==============================================================================
216 | Distribution | Module used - Description | Min. ver. |
217 |---------------------------+--------------------------------------+-----------|
218 | SVG | * SVG - Generate SVG images and | 2.26 |
219 | | files | |
220 |==============================================================================|
221 | Used by: |
222 |------------------------------------------------------------------------------|
223 | * Bio::Draw::Pictogram - SVG |
224 ==============================================================================
225 ==============================================================================
226 | Distribution | Module used - Description | Min. ver. |
227 |---------------------------+--------------------------------------+-----------|
228 | SVG-Graph | * SVG::Graph - Series of Modules to | None |
229 | | produce SVG graphs | |
230 | | * SVG::Graph::Data - NA | |
231 | | * SVG::Graph::Data::Node - NA | |
232 | | * SVG::Graph::Data::Tree - NA | |
233 |==============================================================================|
234 | Used by: |
235 |------------------------------------------------------------------------------|
236 | * Bio::TreeIO::svggraph - SVG::Graph |
237 | * Bio::TreeIO::svggraph - SVG::Graph::Data |
238 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Node |
239 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Tree |
240 ==============================================================================
241 ==============================================================================
242 | Distribution | Module used - Description | Min. ver. |
243 |---------------------------+--------------------------------------+-----------|
244 | Set-Scalar | * Set::Scalar - Set of scalars (inc | None |
245 | | references) | |
246 |==============================================================================|
247 | Used by: |
248 |------------------------------------------------------------------------------|
249 | * Bio::Tree::Compatible - Set::Scalar |
250 ==============================================================================
251 ==============================================================================
252 | Distribution | Module used - Description | Min. ver. |
253 |---------------------------+--------------------------------------+-----------|
254 | Spreadsheet-ParseExcel | * Spreadsheet::ParseExcel - Get | None |
255 | | information from Excel file | |
256 |==============================================================================|
257 | Used by: |
258 |------------------------------------------------------------------------------|
259 | * Bio::Microarray::Tools::MitoChipV2Parser - Spreadsheet::ParseExcel |
260 | * Bio::Microarray::Tools::ReseqChip - Spreadsheet::ParseExcel |
261 | * Bio::SeqIO::excel - Spreadsheet::ParseExcel |
262 ==============================================================================
263 ==============================================================================
264 | Distribution | Module used - Description | Min. ver. |
265 |---------------------------+--------------------------------------+-----------|
266 | Spreadsheet-WriteExcel | * Spreadsheet::WriteExcel - Write | None |
267 | | cross-platform Excel binary file. | |
268 |==============================================================================|
269 | Used by: |
270 |------------------------------------------------------------------------------|
271 | * Bio::Microarray::Tools::ReseqChip - Spreadsheet::WriteExcel |
272 ==============================================================================
273 ==============================================================================
274 | Distribution | Module used - Description | Min. ver. |
275 |---------------------------+--------------------------------------+-----------|
276 | Statistics-Frequency | * Statistics::Frequency - NA | None |
277 |==============================================================================|
278 | Used by: |
279 |------------------------------------------------------------------------------|
280 | * Bio::Microarray::Tools::ReseqChip - Statistics::Frequency |
281 ==============================================================================
282 ==============================================================================
283 | Distribution | Module used - Description | Min. ver. |
284 |---------------------------+--------------------------------------+-----------|
285 | Storable | * Storable - Persistent data | None |
286 | | structure mechanism | |
287 |==============================================================================|
288 | Used by: |
289 |------------------------------------------------------------------------------|
290 | * Bio::DB::SeqFeature::Store - Storable |
291 | * Bio::Restriction::Enzyme - Storable |
292 ==============================================================================
293 ==============================================================================
294 | Distribution | Module used - Description | Min. ver. |
295 |---------------------------+--------------------------------------+-----------|
296 | Test-Exception | * Test::Exception - Functions for | None |
297 | | testing exception-based code | |
298 |==============================================================================|
299 | Used by: |
300 |------------------------------------------------------------------------------|
301 | * Bio::Root::Test - Test::Exception |
302 ==============================================================================
303 ==============================================================================
304 | Distribution | Module used - Description | Min. ver. |
305 |---------------------------+--------------------------------------+-----------|
306 | Test-Simple | * Test::Builder - NA | None |
307 | | * Test::More - More functions for | |
308 | | writing tests | |
309 |==============================================================================|
310 | Used by: |
311 |------------------------------------------------------------------------------|
312 | * Bio::Root::Test::Warn - Test::Builder |
313 | * Bio::Root::Test - Test::More |
314 ==============================================================================
315 ==============================================================================
316 | Distribution | Module used - Description | Min. ver. |
317 |---------------------------+--------------------------------------+-----------|
318 | Test-Warn | * Test::Warn - NA | None |
319 |==============================================================================|
320 | Used by: |
321 |------------------------------------------------------------------------------|
322 | * Bio::Root::Test - Test::Warn |
323 | * Bio::Root::Test::Warn - Test::Warn |
324 ==============================================================================
325 ==============================================================================
326 | Distribution | Module used - Description | Min. ver. |
327 |---------------------------+--------------------------------------+-----------|
328 | Tie-Cacher | * Tie::Cacher - NA | None |
329 |==============================================================================|
330 | Used by: |
331 |------------------------------------------------------------------------------|
332 | * Bio::DB::SeqFeature::Store - Tie::Cacher |
333 ==============================================================================
334 ==============================================================================
335 | Distribution | Module used - Description | Min. ver. |
336 |---------------------------+--------------------------------------+-----------|
337 | Time-HiRes | * Time::HiRes - High resolution | None |
338 | | time, sleep, and alarm | |
339 |==============================================================================|
340 | Used by: |
341 |------------------------------------------------------------------------------|
342 | * Bio::DB::SeqFeature::Store::Loader - Time::HiRes |
343 | * Bio::DB::SeqFeature::Store::DBI::mysql - Time::HiRes |
344 | * Bio::DB::SeqFeature::Store::DBI::Pg - Time::HiRes |
345 ==============================================================================
346 ==============================================================================
347 | Distribution | Module used - Description | Min. ver. |
348 |---------------------------+--------------------------------------+-----------|
349 | Tree-DAG_Node | * Tree::DAG_Node - base class for | None |
350 | | trees | |
351 |==============================================================================|
352 | Used by: |
353 |------------------------------------------------------------------------------|
354 | * Bio::TreeIO::svggraph - Tree::DAG_Node |
355 ==============================================================================
356 ==============================================================================
357 | Distribution | Module used - Description | Min. ver. |
358 |---------------------------+--------------------------------------+-----------|
359 | URI | * URI - NA | None |
360 | | * URI::Escape - General URI | |
361 | | escaping/unescaping functions | |
362 |==============================================================================|
363 | Used by: |
364 |------------------------------------------------------------------------------|
365 | * Bio::DB::NCBIHelper - URI |
366 | * Bio::DB::Query::WebQuery - URI |
367 | * Bio::Tools::EUtilities::EUtilParameters - URI |
368 | * Bio::DB::CUTG - URI::Escape |
369 | * Bio::DB::Biblio::eutils - URI::Escape |
370 | * Bio::FeatureIO::gff - URI::Escape |
371 | * Bio::FeatureIO::interpro - URI::Escape |
372 | * Bio::SeqFeature::Annotated - URI::Escape |
373 ==============================================================================
374 ==============================================================================
375 | Distribution | Module used - Description | Min. ver. |
376 |---------------------------+--------------------------------------+-----------|
377 | WWW-Mechanize | * WWW::Mechanize - Automates web | None |
378 | | page form & link interaction | |
379 |==============================================================================|
380 | Used by: |
381 |------------------------------------------------------------------------------|
382 | * Bio::DB::MeSH - WWW::Mechanize |
383 ==============================================================================
384 ==============================================================================
385 | Distribution | Module used - Description | Min. ver. |
386 |---------------------------+--------------------------------------+-----------|
387 | Win32 | * Win32 - NA | None |
388 |==============================================================================|
389 | Used by: |
390 |------------------------------------------------------------------------------|
391 | * Bio::DB::Fasta - Win32 |
392 | * Bio::DB::GFF - Win32 |
393 | * Bio::DB::Qual - Win32 |
394 | * Bio::Root::IO - Win32 |
395 ==============================================================================
396 ==============================================================================
397 | Distribution | Module used - Description | Min. ver. |
398 |---------------------------+--------------------------------------+-----------|
399 | XML-DOM | * XML::DOM - Implements Level 1 of | None |
400 | | W3's DOM | |
401 |==============================================================================|
402 | Used by: |
403 |------------------------------------------------------------------------------|
404 | * Bio::FeatureIO::interpro - XML::DOM |
405 | * Bio::SeqIO::bsml - XML::DOM |
406 | * Bio::SeqIO::interpro - XML::DOM |
407 ==============================================================================
408 ==============================================================================
409 | Distribution | Module used - Description | Min. ver. |
410 |---------------------------+--------------------------------------+-----------|
411 | XML-DOM-XPath | * XML::DOM::XPath - NA | None |
412 |==============================================================================|
413 | Used by: |
414 |------------------------------------------------------------------------------|
415 | * Bio::FeatureIO::interpro - XML::DOM::XPath |
416 | * Bio::SeqIO::interpro - XML::DOM::XPath |
417 ==============================================================================
418 ==============================================================================
419 | Distribution | Module used - Description | Min. ver. |
420 |---------------------------+--------------------------------------+-----------|
421 | XML-LibXML | * XML::LibXML - Interface to the | None |
422 | | libxml library | |
423 | | * XML::LibXML::Reader - NA | |
424 |==============================================================================|
425 | Used by: |
426 |------------------------------------------------------------------------------|
427 | * Bio::TreeIO::phyloxml - XML::LibXML |
428 | * Bio::TreeIO::phyloxml - XML::LibXML::Reader |
429 ==============================================================================
430 ==============================================================================
431 | Distribution | Module used - Description | Min. ver. |
432 |---------------------------+--------------------------------------+-----------|
433 | XML-Parser | * XML::Parser - Flexible fast | None |
434 | | parser with plug-in styles | |
435 |==============================================================================|
436 | Used by: |
437 |------------------------------------------------------------------------------|
438 | * Bio::Biblio::IO::medlinexml - XML::Parser |
439 ==============================================================================
440 ==============================================================================
441 | Distribution | Module used - Description | Min. ver. |
442 |---------------------------+--------------------------------------+-----------|
443 | XML-SAX | * XML::SAX - NA | None |
444 |==============================================================================|
445 | Used by: |
446 |------------------------------------------------------------------------------|
447 | * Bio::ClusterIO::dbsnp - XML::SAX |
448 | * Bio::SearchIO::blastxml - XML::SAX |
449 | * Bio::SeqIO::bsml_sax - XML::SAX |
450 | * Bio::SeqIO::tigrxml - XML::SAX |
451 ==============================================================================
452 ==============================================================================
453 | Distribution | Module used - Description | Min. ver. |
454 |---------------------------+--------------------------------------+-----------|
455 | XML-SAX-Writer | * XML::SAX::Writer - NA | None |
456 |==============================================================================|
457 | Used by: |
458 |------------------------------------------------------------------------------|
459 | * Bio::SeqIO::tigrxml - XML::SAX::Writer |
460 ==============================================================================
461 ==============================================================================
462 | Distribution | Module used - Description | Min. ver. |
463 |---------------------------+--------------------------------------+-----------|
464 | XML-Simple | * XML::Simple - Easy API to | None |
465 | | maintain XML (esp config files) | |
466 |==============================================================================|
467 | Used by: |
468 |------------------------------------------------------------------------------|
469 | * Bio::DB::HIV::HIVQueryHelper - XML::Simple |
470 | * Bio::DB::Query::HIVQuery - XML::Simple |
471 | * Bio::Tools::EUtilities - XML::Simple |
472 ==============================================================================
473 ==============================================================================
474 | Distribution | Module used - Description | Min. ver. |
475 |---------------------------+--------------------------------------+-----------|
476 | XML-Twig | * XML::Twig - A module for easy | None |
477 | | processing of XML | |
478 |==============================================================================|
479 | Used by: |
480 |------------------------------------------------------------------------------|
481 | * Bio::DB::Biblio::eutils - XML::Twig |
482 | * Bio::DB::Taxonomy::entrez - XML::Twig |
483 | * Bio::Variation::IO::xml - XML::Twig |
484 ==============================================================================
485 ==============================================================================
486 | Distribution | Module used - Description | Min. ver. |
487 |---------------------------+--------------------------------------+-----------|
488 | XML-Writer | * XML::Writer - Module for writing | 0.4 |
489 | | XML documents | |
490 |==============================================================================|
491 | Used by: |
492 |------------------------------------------------------------------------------|
493 | * Bio::SearchIO::Writer::BSMLResultWriter - XML::Writer |
494 | * Bio::SeqIO::agave - XML::Writer |
495 | * Bio::SeqIO::chadoxml - XML::Writer |
496 | * Bio::SeqIO::tinyseq - XML::Writer |
497 | * Bio::SeqIO::game::gameWriter - XML::Writer |
498 | * Bio::Variation::IO::xml - XML::Writer |
499 ==============================================================================
500 ==============================================================================
501 | Distribution | Module used - Description | Min. ver. |
502 |---------------------------+--------------------------------------+-----------|
503 | bioperl-ext | * Bio::Ext::Align - NA | None |
504 | | * Bio::SeqIO::staden::read - NA | |
505 |==============================================================================|
506 | Used by: |
507 |------------------------------------------------------------------------------|
508 | * Bio::SearchDist - Bio::Ext::Align |
509 | * Bio::Tools::AlignFactory - Bio::Ext::Align |
510 | * Bio::Tools::dpAlign - Bio::Ext::Align |
511 | * Bio::Tools::pSW - Bio::Ext::Align |
512 | * Bio::SeqIO::abi - Bio::SeqIO::staden::read |
513 | * Bio::SeqIO::alf - Bio::SeqIO::staden::read |
514 | * Bio::SeqIO::ctf - Bio::SeqIO::staden::read |
515 | * Bio::SeqIO::exp - Bio::SeqIO::staden::read |
516 | * Bio::SeqIO::pln - Bio::SeqIO::staden::read |
517 | * Bio::SeqIO::ztr - Bio::SeqIO::staden::read |
518 ==============================================================================
519 ==============================================================================
520 | Distribution | Module used - Description | Min. ver. |
521 |---------------------------+--------------------------------------+-----------|
522 | libwww-perl | * HTTP::Request - Class | 5.64 |
523 | | encapsulating HTTP Requests | |
524 | | * HTTP::Request::Common - Functions | |
525 | | that generate HTTP::Requests | |
526 | | * HTTP::Response - Class | |
527 | | encapsulating HTTP Responses | |
528 | | * LWP - Libwww-perl | |
529 | | * LWP::Simple - Simple procedural | |
530 | | interface to libwww-perl | |
531 | | * LWP::UserAgent - A WWW UserAgent | |
532 | | class | |
533 |==============================================================================|
534 | Used by: |
535 |------------------------------------------------------------------------------|
536 | * Bio::Tools::EUtilities::EUtilParameters - HTTP::Request |
537 | * Bio::DB::DBFetch - HTTP::Request::Common |
538 | * Bio::DB::HIV - HTTP::Request::Common |
539 | * Bio::DB::NCBIHelper - HTTP::Request::Common |
540 | * Bio::DB::SwissProt - HTTP::Request::Common |
541 | * Bio::DB::WebDBSeqI - HTTP::Request::Common |
542 | * Bio::DB::Query::WebQuery - HTTP::Request::Common |
543 | * Bio::Tools::Run::RemoteBlast - HTTP::Request::Common |
544 | * Bio::DB::WebDBSeqI - HTTP::Response |
545 | * Bio::Tools::Protparam - LWP |
546 | * Bio::Tools::Run::RemoteBlast - LWP |
547 | * Bio::DB::Biblio::eutils - LWP::Simple |
548 | * Bio::Root::IO - LWP::Simple |
549 | * Bio::DB::GenericWebAgent - LWP::UserAgent |
550 | * Bio::DB::MeSH - LWP::UserAgent |
551 | * Bio::DB::WebDBSeqI - LWP::UserAgent |
552 | * Bio::DB::Query::WebQuery - LWP::UserAgent |
553 | * Bio::Root::Build - LWP::UserAgent |
554 ==============================================================================
555 ==============================================================================
556 | Distribution | Module used - Description | Min. ver. |
557 |---------------------------+--------------------------------------+-----------|
558 | libxml-perl | * XML::Parser::PerlSAX - NA | None |
559 |==============================================================================|
560 | Used by: |
561 |------------------------------------------------------------------------------|
562 | * Bio::OntologyIO::InterProParser - XML::Parser::PerlSAX |
563 | * Bio::SeqIO::tinyseq - XML::Parser::PerlSAX |
564 | * Bio::SeqIO::game::gameSubs - XML::Parser::PerlSAX |
565 ==============================================================================
566 ==============================================================================
567 | Distribution | Module used - Description | Min. ver. |
568 |---------------------------+--------------------------------------+-----------|
569 | mod_perl | * Apache2::SubProcess - NA | None |
570 |==============================================================================|
571 | Used by: |
572 |------------------------------------------------------------------------------|
573 | * Bio::DB::WebDBSeqI - Apache2::SubProcess |
574 ==============================================================================