bedtools/bedtools.install

   1 post_install() {
   2                 # Correcting mess caused by previous install
   3                 for i in "annotateBed" "bamToBed" "bed12ToBed6" "bedpeToBam" "bedToBam" "bedToIgv" "bedtools" "closestBed" "clusterBed" "complementBed" "coverageBed" "fastaFromBed" "flankBed" "genomeCoverageBed" "getOverlap" "groupBy" "intersectBed" "linksBed" "maskFastaFromBed" "mergeBed" "multiBamCov" "multiIntersectBed" "nucBed" "pairToBed" "pairToPair" "shuffleBed" "slopBed" "sortBed" "subtractBed" "tagBam" "unionBedGraphs" "windowBed" "windowMaker"
   4                 do
   5                                 if [ -h /usr/local/bin/$i ];then
   6                                         rm -f /usr/local/bin/$i
   7                                 fi
   8                 done
   9 }
  10
  11 post_upgrade() {
  12                 post_install $1
  13 }
  14