cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2010-02-09 08:33:51 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2010, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    MIT, see the file LICENSE.mit in this directory for details.
   8 ;;; Purpose:    ASDF specification for Common Lisp Statistics
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded
  15 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  16
  17 (in-package :cl-user)
  18
  19 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  20 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  21
  22 (cl:defpackage #:cls-system
  23     (:use :common-lisp :asdf))
  24
  25 (in-package #:cls-system)
  26
  27 ;;; To avoid renaming everything from *.lsp to *.lisp...
  28 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  29 ;;; NOT secure against serving multiple architectures/hardwares from
  30 ;;; the same file system (i.e. PPC and x86 would not be
  31 ;;; differentiated).
  32
  33 (defclass cls-lsp-source-file (cl-source-file) ())
  34 (defparameter *fasl-directory*
  35    (make-pathname :directory '(:relative
  36                                #+sbcl "fasl-sbcl"
  37                                #+openmcl "fasl-ccl"
  38                                #+openmcl "fasl-ccl"
  39                                #+cmu "fasl-cmucl"
  40                                #+clisp "fasl-clisp"
  41                                #-(or sbcl openmcl clisp cmucl) "fasl"
  42                                )))
  43
  44
  45 ;;; Handle Luke's *.lsp suffix
  46 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  47 (defmethod asdf::output-files :around ((operation compile-op)
  48                                        (c cls-lsp-source-file))
  49   (list (merge-pathnames *fasl-directory*
  50                          (compile-file-pathname (component-pathname c)))))
  51 ;;; again, thanks to Cyrus for saving me time...
  52
  53
  54 (defsystem "cls"
  55   :version #.(with-open-file
  56                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  57                (read vers))
  58   :author "A.J. Rossini <blindglobe@gmail.com>"
  59   :license "BSD"
  60   :description "Common Lisp Statistics (CLS): A System for Statistical
  61   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
  62   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
  63   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
  64   in 1991, then by AJR starting in 2005."
  65   :serial t
  66   :depends-on (:cffi
  67                :xarray
  68                :lisp-matrix ; on fnv, cl-blapack, ffa
  69                :listoflist
  70                :lift
  71                :rsm-string
  72                ;;    :cl-cairo2  :cl-2d
  73                )
  74   :components ((:static-file "version" :pathname #p"version.lisp-expr")
  75                (:static-file "LICENSE.mit")
  76                (:static-file "README")
  77
  78                (:module
  79                 "packaging"
  80                 :pathname #p"src/"
  81                 :components
  82                 ((:file "packages")
  83                  (:file "config")))
  84
  85                (:module
  86                 "proto-objects"
  87                 :pathname "src/objsys/"
  88                 :serial t
  89                 :depends-on ("packaging")
  90                 :components
  91                 ((:cls-lsp-source-file "lsobjects")))
  92
  93                (:module "cls-core"
  94                         :pathname "src/basics/"
  95                         :serial t
  96                         :depends-on ("packaging" "proto-objects")
  97                         :components
  98                         ((:cls-lsp-source-file "lstypes")
  99                          (:cls-lsp-source-file "lsfloat")
 100
 101                          (:cls-lsp-source-file "compound")
 102                          (:cls-lsp-source-file "lsmacros"
 103                                                     :depends-on ("compound"))
 104
 105                          (:cls-lsp-source-file "lsmath"
 106                                                     :depends-on ("compound"
 107                                                                  "lsmacros"
 108                                                                  "lsfloat"))))
 109
 110                (:module
 111                 "numerics-internal"
 112                 :pathname "src/numerics/"
 113                 :depends-on ("packaging" "proto-objects" "cls-core")
 114                 :components
 115                 ((:cls-lsp-source-file "cffiglue")
 116                  (:cls-lsp-source-file "dists"
 117                                             :depends-on ("cffiglue"))
 118 #|
 119                  (:cls-lsp-source-file "matrices"
 120                                             :depends-on ("cffiglue"))
 121                  (:cls-lsp-source-file "ladata"
 122                                             :depends-on ("cffiglue"
 123                                                          "matrices"))
 124                  (:file "linalg"
 125                         :depends-on ("cffiglue"
 126                                      "matrices"
 127                                      "ladata"))
 128 |#
 129                  ))
 130
 131
 132                ;; Dataframes and statistical structures.
 133                (:module
 134                 "stat-data"
 135                 :pathname "src/data/"
 136                 :depends-on ("packaging"
 137                              "proto-objects"
 138                              "cls-core"
 139                              "numerics-internal")
 140                 :components
 141                 ((:file "dataframe")
 142                  (:file "dataframe-array")
 143                  (:file "dataframe-matrixlike")
 144                  (:file "dataframe-listoflist")
 145                  (:file "data")
 146                  (:file "data-xls-compat")
 147                  (:file "import")))
 148
 149                (:module
 150                 "cls-basics"
 151                 :pathname "src/basics/"
 152                 :depends-on ("packaging"
 153                              "proto-objects"
 154                              "cls-core"
 155                              "numerics-internal"
 156                              "stat-data")
 157                 :components
 158                 ((:cls-lsp-source-file "lsbasics")))
 159
 160
 161
 162                (:module
 163                 "descriptives"
 164                 :pathname "src/describe/"
 165                 :depends-on ("packaging"
 166                              "proto-objects"
 167                              "cls-core"
 168                              "numerics-internal"
 169                              "stat-data"
 170                              "cls-basics")
 171                 :components
 172                 ((:cls-lsp-source-file "statistics")))
 173 #|
 174                (:module
 175                 "visualize"
 176                 :pathname "src/visualize/"
 177                 :depends-on ("cls-core")
 178                 :components
 179                 ((:file "plot")))
 180 |#
 181                (:module
 182                 "optimization"
 183                 :pathname "src/numerics/"
 184                 :depends-on ("packaging"
 185                              "proto-objects"
 186                              "cls-core"
 187                              "numerics-internal"
 188                              "stat-data"
 189                              "cls-basics")
 190                 :components
 191                 ((:file "optimize")))
 192
 193
 194                ;; Applications
 195                (:module
 196                 "stat-models"
 197                 :pathname "src/stat-models/"
 198                 :depends-on ("packaging"
 199                              "proto-objects"
 200                              "cls-core"
 201                              "numerics-internal"
 202                              "cls-basics"
 203                              "descriptives"
 204                              "optimization")
 205                 :components
 206                 ((:file "regression")
 207                  ;; (:cls-lsp-source-file "nonlin"
 208                  ;;       :depends-on ("regression"))
 209                  ;; (:cls-lsp-source-file "bayes"
 210                  ;;       :depends-on ("regression"))
 211                  ))
 212
 213                ;; Applications
 214                (:module
 215                 "example-data"
 216                 :pathname "Data/"
 217                 :depends-on ("packaging"
 218                              "proto-objects"
 219                              "cls-core"
 220                              "numerics-internal"
 221                              "cls-basics"
 222                              "descriptives"
 223                              "optimization")
 224                 :components
 225                 ((:file "examples")
 226                  (:cls-lsp-source-file "absorbtion")
 227                  (:cls-lsp-source-file "diabetes")
 228                  (:cls-lsp-source-file "leukemia")
 229                  (:cls-lsp-source-file "randu")
 230                  (:cls-lsp-source-file "aircraft")
 231                  (:cls-lsp-source-file "metabolism")
 232                  (:cls-lsp-source-file "book")
 233                  (:cls-lsp-source-file "heating")
 234                  (:cls-lsp-source-file "oxygen")
 235                  (:cls-lsp-source-file "stackloss")
 236                  (:cls-lsp-source-file "car-prices")
 237                  (:cls-lsp-source-file "iris")
 238                  (:cls-lsp-source-file "puromycin")
 239                  (:cls-lsp-source-file "tutorial")))
 240
 241                (:module
 242                  "lisp-stat-unittest"
 243                 :depends-on  ("packaging" "proto-objects"
 244                               "cls-core"
 245                               "numerics-internal"
 246                               "stat-data"
 247                               "cls-basics"
 248                               "descriptives"
 249                               "optimization"
 250                               "stat-models"
 251                               "example-data")
 252                  :pathname "src/unittests/"
 253                  :components ((:file "unittests")
 254                               (:file "unittests-lstypes" :depends-on ("unittests"))
 255                               (:file "unittests-specfn" :depends-on ("unittests"))
 256                               (:file "unittests-prob" :depends-on ("unittests"))
 257                               (:file "unittests-proto" :depends-on ("unittests"))
 258                               (:file "unittests-regression" :depends-on ("unittests"))
 259                               (:file "unittests-listoflist" :depends-on ("unittests"))
 260                               (:file "unittests-arrays" :depends-on ("unittests"))
 261                               (:file "unittests-dataframe" :depends-on ("unittests"))))))
 262
 263 #|
 264  (defmethod perform ((o test-op) (c (eql (find-system :cls))))
 265     (describe (lift:run-tests :suite 'lisp-stat-unittests::lisp-stat-ut)))
 266 |#