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split elastic montage dialog for block matching and use
2012-06-26
Ste
p
han Saalfeld
split
e
las
t
ic
m
ontage
d
ialog f
o
r
b
lock matc
h
i
n
g and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Saalfel
d
Me
r
ge branch 'mast
e
r' o
f
s
sh
:
//repo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use an
d
d
o not
i
gnore a
l
p
h
a
i
n
hel
p
er method
commit
|
commitdiff
|
tree
2012-06-21
S
t
ephan Saalfeld
us
e
t
h
e
ne
w
sequential
dialog
s
in "
m
ontage
"
for a s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge b
r
anch 'master' of ssh:
/
/
repo
.
or
.
cz/
s
rv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saa
l
feld
fixed range c
h
e
c
k in l
a
yer
alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalf
e
ld
fixed cond
i
t
i
on check in
A
l
ign Layers
f
or regular
i
zation
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Step
h
an Saalfeld
Merge branch
'
master' i
n
t
o
reg
u
l
arized-affine
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
phan Saa
l
feld
do not consid
e
r disconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
eld
M
e
rge branch 'regularized-affin
e
' of
ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align graphs and match onl
y
overlapping
tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
a
lfeld
pre-align
graphs and
ma
t
ch only ove
r
lappin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan
S
aal
f
eld
initialize
T
ile models and not
o
nly patc
h
es in alignG
r
aphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
c
h
anged a
l
ignGraphs input coll
e
c
t
ions from Set to Ite
r
a
b
le
commit
|
commitdiff
|
tree
2012-06-08
S
teph
a
n S
a
a
l
fe
l
d
make sure that stati
c
parame
t
ers do not override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saal
f
eld
r
e
mov
e
spurious im
p
ort
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
wo
r
karound
O
r
acle javac gener
i
cs issue
commit
|
commitdiff
|
tree
2012-06-05
St
e
pha
n
Saalfeld
multi-layer-mosaic uses
Pa
r
am/ParamOptimize
.
s
etup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
a
a
lfeld
mon
t
age
l
ayers uses
P
a
ramOptimize
.
setu
p
instead
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan
Saalfeld
do no
t
fix a r
a
ndom tile if none is fixed
commit
|
commitdiff
|
tree
2012-05-29
S
t
ephan Sa
a
lfeld
Con
d
ens
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
S
tephan Sa
a
lfeld
Added
.
mai
l
map
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saal
f
e
ld
Merge branch 'master' int
o
regula
r
i
zed-affine
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Sa
a
lfel
d
adde
d
*N
o
ne* field to
layer range reference
s
elect
i
on
commit
|
commitdiff
|
tree
2012-05-21
Step
h
a
n Saalfeld
s
plit
A
lign
.
Param
O
pt
i
mi
z
e dialogs in p
i
eces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saal
f
eld
added
Gene
r
icA
f
fin
e
Tile2D
commit
|
commitdiff
|
tree
2012-05-21
S
tephan S
a
alfeld
genera
l
ized Abstrac
t
AffineTile2
D
g
e
neric parameter
commit
|
commitdiff
|
tree
2012-05-15
St
e
pha
n
Saalfe
l
d
trac
k
refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
a
dded re
g
ulari
z
e
d affine layer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan
S
aalfeld
fixed
createImage(): use
p
r
e
m
ultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
do not print the mipmap sc
a
le
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
eld
for no
w
,
d
o not use pre-mu
l
tipl
i
ed a
l
pha
since it d
o
es
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed wrong paintin
g
o
f P
a
tche
s
wh
e
n using a downsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Sa
a
lfeld
D
ow
n
s
amp
l
erMipMaps now consistently u
s
es combined
d
ownsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
phan Saa
l
fel
d
f
i
xed Downsam
p
l
e
rMi
p
Maps blending
m
erged
alpha i
n
t
o
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
a
n Saalfeld
Downsample
r
tes
t
still shows
i
t
b
eing si
g
nificantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfel
d
F
i
xed Downsam
p
ler: r
a
nge chec
k
in by
t
e
c
o
nversio
n
wa
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Merge b
r
anch 'integ
r
al' of ss
h
://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
tephan
S
aal
f
eld
added missin
g
package to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an
S
aalfeld
Me
r
g
e
b
r
anch
'
master' of ssh://
r
epo
.
or
.
cz
/
sr
v
/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n Saa
l
feld
fi
x
loca
l
sc
a
le
e
stimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
adde
d
getLoc
a
lScale(x,y)
m
ethod t
o
Patch
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an Saalfe
l
d
pa
t
ch
d
o
es not p
r
opaga
t
e
N
o
n
Invertibl
e
ModelE
x
ception
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saalfeld
Me
r
ge branch 'maste
r
'
of ssh://r
e
po
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalf
e
ld
adde
d
method
s
to fetch the close
s
t triangle of
a
t
ransform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
in
t
he
middle of
.
.
.
amend with final c
o
m
m
it
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
demonstrate byte conv
e
rsion in an e
x
tra loo
p
to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
St
e
phan
S
aalfeld
M
erge branch 'integral' of ssh://
r
epo
.
or
.
c
z
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Steph
a
n Saalfeld
D
o
wnsamp
l
er
f
inished
.
I
h
a
v
e teste
d
s
everal variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalfeld
exper
i
mantal
commit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saal
f
e
l
d
Merge
b
ranch 'integral'
o
f ssh
:
//r
e
po
.
o
r
.
c
z/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan
Saa
l
f
e
ld
D
ownsampler with alpha-chann
e
ls rend
e
ring into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Ste
p
han Saalfeld
M
e
rge branch 'maste
r
' o
f
ssh://
r
epo
.
or
.
c
z
/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-02-22
Stepha
n
Saal
f
e
l
d
set i
n
terpolat
i
on mod
e
t
o
actually in
t
erpol
a
te masks
commit
|
commitdiff
|
tree
2012-01-06
S
t
ephan Saalfeld
Fixed bug 39
2
,
t
he
prop
e
rty n_mipmaps_thr
e
ads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
Elast
i
cM
o
ntage:
do not
v
isualize
commit
|
commitdiff
|
tree
2011-11-07
S
t
e
p
h
an Saalfeld
M
erge bra
n
ch 'master' of
s
sh://repo
.
or
.
cz
/
srv/
g
it/trake
m
2
commit
|
commitdiff
|
tree
2011-11-07
St
e
phan Saalfeld
Alig
n
Task: really skip
layers annotation-with
l
inked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
S
t
ephan Saalfeld
E
l
a
sticM
o
ntage:
r
e
s
pect f
i
xed Pat
c
hes (f
r
o
m sel
e
c
t
ion
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
r
e
named shading lo
c
al
p
ara
m
et
e
r
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfe
l
d
Atte
m
pt
to f
i
x
b
u
g 38
0
.
Please
check if the behavior
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han Saalfeld
added
co
m
ments and fi
x
e
d
typo
commit
|
commitdiff
|
tree
2011-10-22
Stephan Saalfeld
Ela
s
ticAlignment
/
M
o
ntage
:
commit
|
commitdiff
|
tree
2011-10-19
S
t
ep
h
an
Saalfeld
Mer
g
e branch 'master' of ssh
:
//repo
.
o
r
.
cz/srv/
g
it
/
trakem2
commit
|
commitdiff
|
tree
2011-10-12
Stephan Saalfeld
Mer
g
e branch
'
master' of ssh
:
//
r
epo
.
o
r
.
c
z
/
srv/git/trakem
2
commit
|
commitdiff
|
tree
2011-10-10
S
t
ephan Saalf
e
ld
Merge branch 'm
a
ster' of ssh://re
p
o
.
or
.
c
z
/srv
/
g
it/trakem2
commit
|
commitdiff
|
tree
2011-10-10
St
e
p
han
S
aal
f
e
ld
Align uses
Utils
.
log instead of IJ
.
l
og
commit
|
commitdiff
|
tree
2011-10-10
Stephan
S
a
alfeld
Distortion correction uses Utils
.
log instead of IJ
.
l
o
g
commit
|
commitdiff
|
tree
2011-10-10
St
e
phan Saalfe
l
d
lo
g
time and
d
a
te pear ea
c
h log print
commit
|
commitdiff
|
tree
2011-10-10
S
tephan Saalfeld
added
experimental
1
6b
i
t unsign
e
d
t
iles ex
p
orter
commit
|
commitdiff
|
tree
2011-10-10
S
t
e
phan Saalfeld
Transform
M
eshMap
p
ing
W
ithMa
s
ks got
methods and renderin
g
commit
|
commitdiff
|
tree
2011-10-01
Stephan
S
aalfeld
ma
k
e IJ
.
log to Utils
.
log in ElasticLayerAlignme
n
t
commit
|
commitdiff
|
tree
2011-09-29
Steph
a
n
Sa
a
lfeld
a
d
de
d
block radi
u
s as
parameter
to
commit
|
commitdiff
|
tree
2011-09-28
S
t
ephan Saalfeld
E
lasticLayerAlign
m
ent vi
s
ualiz
a
tion
back to fa
l
se
commit
|
commitdiff
|
tree
2011-09-27
S
t
e
p
han Saalfeld
s
p
ri
n
g
m
esh
damp
b
ack to
normal, no
t
mu
c
h
commit
|
commitdiff
|
tree
2011-09-27
Stephan Sa
a
lfeld
Merge branc
h
'master' o
f
ssh:/
/
r
e
po
.
or
.
cz/srv/git/
t
rak
e
m2
commit
|
commitdiff
|
tree
2011-09-27
Steph
a
n Saalfel
d
added loca
l
s
m
oo
t
hness filte
r
to elast
i
c
l
ay
e
r
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalfeld
add
e
d
a m
e
t
h
od to creat
e
an Abstrac
t
Model u
s
ing an
commit
|
commitdiff
|
tree
2011-09-25
Step
h
an Saalfeld
fixed
w
rong namings from last commit
commit
|
commitdiff
|
tree
2011-09-24
Stepha
n
Saalfeld
ad
d
ed transfer modes
for Coo
r
di
n
ateTransforms,
commit
|
commitdiff
|
tree
2011-09-24
Stephan Saalfeld
a
dded a
m
ethod to pre
-
append
a
C
o
ordinateTransform
commit
|
commitdiff
|
tree
2011-09-15
S
t
ep
h
an Saalfeld
remov
e
c
lut
t
er
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfeld
Merge branch 'mast
e
r
'
i
nto elastic-ali
g
n
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfe
l
d
sm
a
ll declu
t
ter N
o
n
L
inearTransformM
o
de
commit
|
commitdiff
|
tree
2011-09-14
Stepha
n
S
aalf
e
ld
Merge
branc
h
'el
a
stic-align'
o
f ssh:
/
/
repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
S
t
eph
a
n S
a
alfeld
TransformMe
s
hMappi
n
gWithMasks
multi-threade
d
commit
|
commitdiff
|
tree
2011-09-14
Steph
a
n Sa
a
lf
e
ld
m
ake mesh resolution a Patch pa
r
ameter instead of
3
2
commit
|
commitdiff
|
tree
2011-09-12
Ste
p
han Saalfel
d
Merge branch '
m
aster' i
n
to elastic-al
i
g
n
commit
|
commitdiff
|
tree
2011-09-12
S
te
p
h
a
n Saal
f
eld
Merge branc
h
'elastic-align' of ss
h
://repo
.
or
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
Ste
p
han Saalf
e
ld
se
p
arate SIFT p
a
r
ameter dia
l
og
commit
|
commitdiff
|
tree
2011-09-06
Ste
p
han
Saalfeld
fixed Elasti
c
Montage usi
n
g t
h
e wron
g
linear
model
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
Steph
a
n Saa
l
f
e
ld
fixed Downsampler doing one pixel
l
es
s
t
han it sh
o
uld
commit
|
commitdiff
|
tree
2011-08-30
Stepha
n
Saa
l
feld
E
l
asticMontag
e
: switch off visual
i
zation ag
a
in
commit
|
commitdiff
|
tree
2011-08-30
S
t
ephan Saalfeld
f
i
x
G
aussia
n
mipm
a
p
g
ener
a
tion in
F
SLoader:
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalf
e
ld
F
l
oatProcesssorT2 got a met
h
od fo
r
downsampling by
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfe
l
d
upda
t
ed ser
i
al uid
commit
|
commitdiff
|
tree
2011-08-29
Stephan
Saalf
e
l
d
added an 1/2 downs
a
m
pler f
o
r all I
m
ag
e
Processor
types
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saa
l
feld
E
l
asticMontage:
commit
|
commitdiff
|
tree
2011-08-29
Stephan
Saalfe
l
d
fix copy/paste bug
in Elast
i
cMontage that ma
d
e image2
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Stephan
Saalfeld
E
l
asticLay
e
rAli
g
nment: apply a copy
of t
h
e
l
ayer tra
n
sf
o
r
m
.
.
.
commit
|
commitdiff
|
tree
next