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Merge branch 'integral' of ssh://repo.or.cz/srv/git/trakem2 into integral
2012-03-27
Stepha
n
Saalfeld
M
e
r
ge branch 'i
n
t
eg
r
al' of
ssh://repo
.
o
r
.
cz/
s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalf
e
ld
added
getLocalScale(x,y) method to Pa
t
ch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalf
e
ld
p
atch does
not propagate NonInvertibleModelE
x
ception
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
tephan Saalf
e
l
d
Merge branch
'
mast
e
r'
of ssh://re
p
o
.
or
.
c
z/srv/
g
it/t
r
ak
e
m2
commit
|
commitdiff
|
tree
2012-03-07
Step
h
a
n
S
a
a
l
feld
added methods to fetch
t
he
c
l
ose
s
t triangle of
a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
epha
n
Saa
l
f
eld
in the
m
iddle of
.
.
.
a
mend with final commit
commit
|
commitdiff
|
tree
2012-02-27
S
tephan Saalfeld
d
e
mon
s
t
rate byt
e
convers
i
o
n in an ex
t
ra loop t
o
be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
tephan Saa
l
feld
Merge
b
ranch 'integr
a
l' of ssh:
/
/
r
epo
.
o
r
.
c
z/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
Saalfeld
D
ownsampler finis
h
ed
.
I have tested sev
e
ral
v
aria
n
ts
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saal
f
e
l
d
exp
e
rimanta
l
commi
t
:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
Merge branch 'integral'
o
f
ssh:/
/
repo
.
o
r
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
St
e
phan Sa
a
lfeld
D
ownsampler with alpha-channels rendering
i
nto byt
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
Merge
b
ranc
h
'master
'
of ssh:/
/
repo
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
set int
e
rpolatio
n
mode
t
o actually interpola
t
e masks
commit
|
commitdiff
|
tree
2012-01-06
S
tepha
n
S
aal
f
eld
Fixed bug 392
,
the property n_
m
ipmap
s
_thr
e
ads
must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han Saalfeld
ElasticMont
a
ge: do
no
t
vis
u
alize
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
Me
r
g
e br
a
nch 'master' o
f
ss
h
://repo
.
or
.
cz/
s
r
v
/git
/
trakem2
commit
|
commitdiff
|
tree
2011-11-07
Step
h
an
S
aalfeld
AlignTas
k
:
r
eally skip layers annotati
o
n-w
i
th linked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan S
a
alfe
l
d
Elas
t
icMontage: re
s
pect fixed Patches (
f
rom
s
election
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan
S
aalfeld
r
ename
d
shading local parameter
commit
|
commitdiff
|
tree
2011-11-07
Stephan
Sa
a
lfel
d
A
t
t
empt to fix bug 3
8
0
.
Please check
i
f t
h
e
behavior
commit
|
commitdiff
|
tree
2011-11-07
St
e
p
h
an Saalfeld
added c
o
mments
a
nd
fixed typo
commit
|
commitdiff
|
tree
2011-10-22
S
tephan Saalfeld
ElasticAlignmen
t
/M
o
ntage:
commit
|
commitdiff
|
tree
2011-10-19
Steph
a
n Saalfeld
Merge branch '
m
aster' o
f
ssh://re
p
o
.
or
.
cz/srv/git/
t
rake
m
2
commit
|
commitdiff
|
tree
2011-10-12
Stephan
Saalfel
d
Merge
b
ranch
'master' of
ssh
:
//repo
.
o
r
.
cz/
s
rv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Merge branch 'mast
e
r
'
of
ssh://repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-10
Stephan
S
aa
l
feld
Al
i
gn u
s
es Utils
.
log instea
d
o
f
I
J
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Distortion
c
o
rrection uses U
t
i
l
s
.
log
i
nstead of IJ
.
l
o
g
commit
|
commitdiff
|
tree
2011-10-10
Stephan Sa
a
lfe
l
d
log time
a
nd date
p
ear each log
p
rint
commit
|
commitdiff
|
tree
2011-10-10
Stephan Sa
a
lfel
d
a
d
d
ed
experimental
1
6b
i
t unsigne
d
t
iles expo
r
ter
commit
|
commitdiff
|
tree
2011-10-10
S
t
eph
a
n Saa
l
feld
Tr
a
ns
f
ormMesh
M
appi
n
gWithMas
k
s got methods a
n
d
r
e
ndering
commit
|
commitdiff
|
tree
2011-10-01
S
teph
a
n
Saal
f
eld
ma
k
e IJ
.
log t
o
Utils
.
log in El
a
s
t
icLayerAlignment
commit
|
commitdiff
|
tree
2011-09-29
S
tephan S
a
alf
e
ld
added block radius as par
a
meter to
commit
|
commitdiff
|
tree
2011-09-28
Stephan Saalf
e
l
d
Ela
s
ticLay
e
rAlig
n
ment visualization ba
c
k t
o
fal
s
e
commit
|
commitdiff
|
tree
2011-09-27
Ste
p
ha
n
Sa
a
lfeld
springme
s
h damp back to
n
ormal, not much
commit
|
commitdiff
|
tree
2011-09-27
Stephan
S
aa
l
f
eld
Merge branch 'maste
r
' of ssh://rep
o
.
or
.
c
z/srv
/
gi
t
/trakem2
commit
|
commitdiff
|
tree
2011-09-27
S
t
ephan Saalfeld
added local sm
o
oth
n
ess fil
t
er to elastic layer
commit
|
commitdiff
|
tree
2011-09-27
S
t
ephan Sa
a
lfeld
a
dded a metho
d
to
cr
e
ate an AbstractModel
u
sing an
commit
|
commitdiff
|
tree
2011-09-25
Steph
a
n Saalf
e
ld
fixed wrong n
a
ming
s
f
rom last commit
commit
|
commitdiff
|
tree
2011-09-24
Step
h
an
S
aalfeld
a
d
ded transfer modes for Coo
r
d
i
nate
T
r
an
s
forms,
commit
|
commitdiff
|
tree
2011-09-24
Ste
p
ha
n
Saalfel
d
ad
d
ed a me
t
hod to pre
-
appen
d
a
CoordinateTran
s
form
commit
|
commitdiff
|
tree
2011-09-15
Stephan
Sa
a
lfeld
remove
cl
u
t
ter
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfel
d
M
e
rge bran
c
h
'
m
a
ster'
into elastic-align
commit
|
commitdiff
|
tree
2011-09-15
S
t
ephan S
a
al
f
e
l
d
small declutt
e
r Non
L
in
e
a
rTransfo
r
m
M
ode
commit
|
commitdiff
|
tree
2011-09-14
Stephan S
a
a
l
feld
Merge br
a
nch 'elastic-align' of ssh://repo
.
or
.
cz
/
s
r
v
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Stephan S
a
alfeld
Tran
s
formMeshM
a
p
p
i
n
gWithMasks mult
i
-threade
d
commit
|
commitdiff
|
tree
2011-09-14
Ste
p
h
a
n
S
aalfeld
make mesh resolution a
P
atch paramete
r
instea
d
of
32
commit
|
commitdiff
|
tree
2011-09-12
Ste
p
han Saalfeld
M
erge
b
ranch 'master' i
n
t
o
elastic-align
commit
|
commitdiff
|
tree
2011-09-12
Stephan
S
aalfeld
Mer
g
e bran
c
h
'elastic-align' of ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
Step
h
an S
a
alfeld
sepa
r
ate SIFT param
e
t
er dialog
commit
|
commitdiff
|
tree
2011-09-06
Stephan
Saalfeld
fixed Ela
s
ti
c
Montage using the w
r
ong linear mode
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
Stephan Sa
a
lfeld
fixed Downsamp
l
er d
o
ing one
pixel le
s
s
t
han it shoul
d
commit
|
commitdiff
|
tree
2011-08-30
S
t
e
p
han Sa
a
l
f
eld
El
a
s
tic
M
ontag
e
: switc
h
off visual
i
zatio
n
again
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saa
l
fe
l
d
fix Gaussian mipmap
gen
e
r
a
tion in FSL
o
ader:
commit
|
commitdiff
|
tree
2011-08-30
Stepha
n
Saalfeld
F
loatProcesssorT2 got a
m
etho
d
for downsam
p
ling by
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Step
h
a
n S
a
alfeld
updated serial uid
commit
|
commitdiff
|
tree
2011-08-29
Step
h
an Saal
f
eld
a
d
ded an 1/2 downsampler for all Im
a
geP
r
o
c
e
ssor types
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfeld
Elast
i
cMo
n
t
a
ge:
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfe
l
d
fix copy
/
paste bug in E
l
asticMont
a
g
e
that made imag
e
2
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Step
h
an Saalfeld
ElasticLaye
r
A
l
ignment: apply a copy of the layer transform
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Stephan Saal
f
eld
Overr
i
de
applyInPlace method in
MLS
T
and MLST2,
s
ynchronizin
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
Stephan Saalfeld
ElasticLayerAlignment:
a
pply
tran
s
formations using
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
St
e
phan
S
a
alfeld
Fixed ina
c
curate rendering of flat images with quality
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
Stephan
S
aalfeld
E
la
s
ticMontage: d
o
not
v
is
u
aliz
e
(can
b
e
harmful when
.
.
.
commit
|
commitdiff
|
tree
2011-08-20
Steph
a
n Sa
a
lf
e
ld
Patch
e
d patch painti
n
g such
t
hat
it con
f
orms to the
.
.
.
Signed-off-by:
Stephan Saalfeld
<saalfeld@mpi-cbg.de>
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use Moving
L
eastSquar
e
sTransf
o
rm2 in ElasticL
a
y
erAlignment
commit
|
commitdiff
|
tree
2011-08-10
St
e
phan Saalfeld
use MovingLeas
t
SquaresTransform2 in
ElasticMont
a
g
e
commit
|
commitdiff
|
tree
2011-08-10
Stepha
n
Saalfe
l
d
use
M
ovingLeastS
q
uar
e
sTran
s
form2 for wa
r
pin
g
in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
tephan
Saalfeld
use MovingLeast
S
quare
s
Tr
a
n
s
f
orm2
i
n N
o
nLin
e
a
rTra
n
sformMode
commit
|
commitdiff
|
tree
2011-08-10
St
e
p
han Saalfeld
Added
M
ovingLeas
t
Square
s
Transform2 ext
e
n
ding
commit
|
commitdiff
|
tree
2011-08-07
Steph
a
n Saalfeld
ElasticLayerAlignm
e
nt: W
h
en transferring lay
e
r
transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan
S
aalf
e
ld
flu
s
h c
a
che
b
etw
e
en l
a
yer exports (the
cache
is otherw
i
s
e
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
S
t
e
phan
Saalfeld
free
m
emory bef
o
re running memory
d
emanding tasks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saa
l
feld
fixed b
u
g in linearLayerAlignment, calculat
e
and apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
S
t
epha
n
Saalfeld
flush im
a
ge ca
c
he me
m
ory before doing
a mon
t
age
commit
|
commitdiff
|
tree
2011-06-29
Steph
a
n Saalfeld
E
l
as
t
icMontage:
commit
|
commitdiff
|
tree
2011-06-29
Ste
p
han Saalfeld
Merge
b
r
a
nch 'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Merg
e
branch 'master' int
o
e
las
t
ic-align
commit
|
commitdiff
|
tree
2011-06-28
Steph
a
n Saalfe
l
d
Added `seems-to-work' e
l
as
t
ic
m
o
n
t
a
g
ing
.
Missing
p
arts a
r
e
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
*
mad
e
Patch
.
P
atchImage a stati
c
class (i
t
has n
o
references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stepha
n
Sa
a
lfe
l
d
added
P
a
ir to Abstract
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
Align
.
j
a
va: moved twice i
m
p
lement
e
d Mode
l
fitting a
n
d
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stepha
n
S
aalfeld
Ela
s
ticAlign u
s
es
th
e
loca
l
s
iftParam for identi
f
ying
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
TransformMeshMappingWithMas
k
round
s
t
rian
g
el boundi
n
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saa
l
fe
l
d
attempt to get shar
e
d function
for
laye
r
alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saalfeld
t
i
tled mon
t
age di
a
log `Mon
t
age' consistently with
t
he
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
Fixed
T
hrea
d
int
e
r
r
upt
i
o
n in Alig
n
.
c
onnectTi
l
ePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan Saalfeld
`Mo
n
tage all im
a
ges in
this
laye
r
'
:
commit
|
commitdiff
|
tree
2011-06-17
Stepha
n
Saalfeld
ElasticAlign fi
x
e
s
:
commit
|
commitdiff
|
tree
2011-06-16
Stephan
S
aalfeld
M
e
r
ge branch 'm
a
s
ter'
into ela
s
tic-a
l
ign
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalf
e
ld
comment test rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan
S
aa
l
f
e
ld
st
a
rted with Elastic A
l
i
g
nm
e
n
t, layer
al
i
gnment
a
lready
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
t
e
pha
n
Saalf
e
ld
Merg
e
branch
'
mast
e
r' into mpicbg
-
model-interface
commit
|
commitdiff
|
tree
2010-11-20
S
t
eph
a
n Saalfeld
track
i
n
g
m
p
icbg m
o
del-
i
nterface
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicbg
.
t
r
akem
2
.
transform
.
T
ransformMesh ex
t
rapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed b
u
g 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
*
add m
i
nimal ab
s
olute
number of inl
i
e
rs as a p
a
r
a
meter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branch '
m
aster' into rejectconst
a
ntbackground
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Me
r
ge branc
h
'
m
aster' of
s
sh://repo
.
o
r
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan
S
aa
l
feld
Merge
bra
n
ch 'r
e
jectconsta
n
tba
c
kground' of ss
h
://repo
.
.
.
commit
|
commitdiff
|
tree
next