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2013-10-10	Stephan Saalfeld	replaced plugins.config with the Fiji version	commit \| commitdiff \| tree
2013-09-20	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2013-09-19	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2013-09-19	Stephan Saalfeld	Parallel pairOverlappingTiles did not work and reported...	commit \| commitdiff \| tree
2013-09-16	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2013-09-16	Stephan Saalfeld	re-added legacy optimizer for spring meshes, this would...	commit \| commitdiff \| tree
2013-09-16	Stephan Saalfeld	T2-NIT/pom.xml can inherit version number from parent	commit \| commitdiff \| tree
2013-08-14	Stephan Saalfeld	added missing dependencies to java3d core-utils and...	commit \| commitdiff \| tree
2013-08-14	Stephan Saalfeld	set parent pom of pom-trakem2 to pom-fiji.2.0.0-SNAPSHOT	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	Merge branch 'spring-mesh2' of ssh://repo.or.cz/srv...	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	Merge branch 'master' into spring-mesh2	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	raised mpicbg dependency version to 0.6.1-SNAPSHOT	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	raised dependency to Simple_Neurite_Tracer to 2.0.2	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	Merge branch 'master' into spring-mesh2	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	added comments and auto-finalize in DistortionCorrection/NLT	commit \| commitdiff \| tree
2013-08-12	Stephan Saalfeld	added mpicbg.version as maven property,	commit \| commitdiff \| tree
2013-05-06	Stephan Saalfeld	track move of the imglib1 dependency	commit \| commitdiff \| tree
2013-04-22	Stephan Saalfeld	Merge branch 'master' into spring-mesh2	commit \| commitdiff \| tree
2013-03-05	Stephan Saalfeld	Merge branch 'master' into spring-mesh2	commit \| commitdiff \| tree
2013-01-18	Stephan Saalfeld	use arraylist where arraylists are returned	commit \| commitdiff \| tree
2013-01-16	Stephan Saalfeld	adjust mpicbg spring-mesh2 which needs less damping	commit \| commitdiff \| tree
2013-01-11	Stephan Saalfeld	Fixed bug in Patch.getFullCoordinateTransform that...	commit \| commitdiff \| tree
2013-01-11	Stephan Saalfeld	Changed fixedPatches/Tiles input collection to Set...	commit \| commitdiff \| tree
2013-01-11	Stephan Saalfeld	Pair constructor has to be public	commit \| commitdiff \| tree
2013-01-10	Stephan Saalfeld	forgot to set isAligned flag in elastic layer alignment...	commit \| commitdiff \| tree
2013-01-09	Stephan Saalfeld	elastic montage param must be public	commit \| commitdiff \| tree
2013-01-07	Stephan Saalfeld	added Patch.getFullCordinateTransform() which generates a	commit \| commitdiff \| tree
2013-01-07	Stephan Saalfeld	* removed isAligned from Abstract Param class	commit \| commitdiff \| tree
2013-01-05	Stephan Saalfeld	877: it is legal for layerThing to be null	commit \| commitdiff \| tree
2012-12-21	Stephan Saalfeld	Corrected several long-standing issues with SIFT-linear and	commit \| commitdiff \| tree
2012-12-19	Stephan Saalfeld	RegularizedLayerAlignment got more flexible API methods and	commit \| commitdiff \| tree
2012-12-19	Stephan Saalfeld	clearing cache in layer alignment must be default true	commit \| commitdiff \| tree
2012-12-19	Stephan Saalfeld	print optimizer results and do not print "matching...	commit \| commitdiff \| tree
2012-12-19	Stephan Saalfeld	do not remove empty layers in layer alignment	commit \| commitdiff \| tree
2012-11-07	Stephan Saalfeld	fixed version number of mpicbg dependency	commit \| commitdiff \| tree
2012-11-07	Stephan Saalfeld	fixed merge error: moved RobustNormalizeLocalContrast...	commit \| commitdiff \| tree
2012-09-01	Stephan Saalfeld	multi-threaded RobustNormalizeLocalContrast main body	commit \| commitdiff \| tree
2012-09-01	Stephan Saalfeld	Removed DisplayCanvas.setDrawingColor(int,int,boolean...	commit \| commitdiff \| tree
2012-08-31	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-08-31	Stephan Saalfeld	added experimental local contrast enhancer RobustNormalizeLo...	commit \| commitdiff \| tree
2012-06-29	Stephan Saalfeld	removed obsolete choice from align layers dialog	commit \| commitdiff \| tree
2012-06-26	Stephan Saalfeld	split elastic montage dialog for block matching and use	commit \| commitdiff \| tree
2012-06-26	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-06-26	Stephan Saalfeld	use and do not ignore alpha in helper method	commit \| commitdiff \| tree
2012-06-21	Stephan Saalfeld	use the new sequential dialogs in "montage" for a selection...	commit \| commitdiff \| tree
2012-06-20	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-06-20	Stephan Saalfeld	fixed range check in layer alignment	commit \| commitdiff \| tree
2012-06-14	Stephan Saalfeld	fixed condition check in Align Layers for regularization...	commit \| commitdiff \| tree
2012-06-14	Stephan Saalfeld	Merge branch 'master' into regularized-affine	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	do not consider disconnected tiles	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	Merge branch 'regularized-affine' of ssh://repo.or...	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	pre-align graphs and match only overlapping tiles	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	pre-align graphs and match only overlapping tiles	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	initialize Tile models and not only patches in alignGraphs	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	changed alignGraphs input collections from Set to Iterable	commit \| commitdiff \| tree
2012-06-08	Stephan Saalfeld	make sure that static parameters do not override each...	commit \| commitdiff \| tree
2012-06-05	Stephan Saalfeld	remove spurious import	commit \| commitdiff \| tree
2012-06-05	Stephan Saalfeld	workaround Oracle javac generics issue	commit \| commitdiff \| tree
2012-06-05	Stephan Saalfeld	multi-layer-mosaic uses Param/ParamOptimize.setup(String...	commit \| commitdiff \| tree
2012-06-05	Stephan Saalfeld	montage layers uses ParamOptimize.setup instead of...	commit \| commitdiff \| tree
2012-06-05	Stephan Saalfeld	do not fix a random tile if none is fixed	commit \| commitdiff \| tree
2012-05-29	Stephan Saalfeld	Condensed .mailmap	commit \| commitdiff \| tree
2012-05-29	Stephan Saalfeld	Added .mailmap	commit \| commitdiff \| tree
2012-05-21	Stephan Saalfeld	Merge branch 'master' into regularized-affine	commit \| commitdiff \| tree
2012-05-21	Stephan Saalfeld	added None field to layer range reference selection	commit \| commitdiff \| tree
2012-05-21	Stephan Saalfeld	split Align.ParamOptimize dialogs in pieces that fit...	commit \| commitdiff \| tree
2012-05-21	Stephan Saalfeld	added GenericAffineTile2D	commit \| commitdiff \| tree
2012-05-21	Stephan Saalfeld	generalized AbstractAffineTile2D generic parameter	commit \| commitdiff \| tree
2012-05-15	Stephan Saalfeld	track refactoring in mpicbg.	commit \| commitdiff \| tree
2012-05-09	Stephan Saalfeld	added regularized affine layer alignment,	commit \| commitdiff \| tree
2012-03-28	Stephan Saalfeld	fixed createImage(): use premultiplied raster	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	do not print the mipmap scale	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	for now, do not use pre-multiplied alpha since it does...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	Fixed wrong painting of Patches when using a downsampler...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	DownsamplerMipMaps now consistently uses combined downsampli...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	fixed DownsamplerMipMaps blending merged alpha into...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	Downsampler test still shows it being significantly...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	Fixed Downsampler: range check in byte conversion was...	commit \| commitdiff \| tree
2012-03-27	Stephan Saalfeld	Merge branch 'integral' of ssh://repo.or.cz/srv/git...	commit \| commitdiff \| tree
2012-03-08	Stephan Saalfeld	added missing package to Fakefile	commit \| commitdiff \| tree
2012-03-08	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-03-08	Stephan Saalfeld	fix local scale estimate	commit \| commitdiff \| tree
2012-03-07	Stephan Saalfeld	added getLocalScale(x,y) method to Patch	commit \| commitdiff \| tree
2012-03-07	Stephan Saalfeld	patch does not propagate NonInvertibleModelException...	commit \| commitdiff \| tree
2012-03-07	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-03-07	Stephan Saalfeld	added methods to fetch the closest triangle of a transform...	commit \| commitdiff \| tree
2012-02-27	Stephan Saalfeld	in the middle of ... amend with final commit	commit \| commitdiff \| tree
2012-02-27	Stephan Saalfeld	demonstrate byte conversion in an extra loop to be...	commit \| commitdiff \| tree
2012-02-25	Stephan Saalfeld	Merge branch 'integral' of ssh://repo.or.cz/srv/git...	commit \| commitdiff \| tree
2012-02-25	Stephan Saalfeld	Downsampler finished. I have tested several variants...	commit \| commitdiff \| tree
2012-02-24	Stephan Saalfeld	experimantal commit:	commit \| commitdiff \| tree
2012-02-23	Stephan Saalfeld	Merge branch 'integral' of ssh://repo.or.cz/srv/git...	commit \| commitdiff \| tree
2012-02-23	Stephan Saalfeld	Downsampler with alpha-channels rendering into byte...	commit \| commitdiff \| tree
2012-02-22	Stephan Saalfeld	Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2	commit \| commitdiff \| tree
2012-02-22	Stephan Saalfeld	set interpolation mode to actually interpolate masks	commit \| commitdiff \| tree
2011-10-01	Stephan Saalfeld	make IJ.log to Utils.log in ElasticLayerAlignment	commit \| commitdiff \| tree
2011-08-10	Stephan Saalfeld	use MovingLeastSquaresTransform2 in ElasticLayerAlignment	commit \| commitdiff \| tree
2011-08-10	Stephan Saalfeld	use MovingLeastSquaresTransform2 in ElasticMontage	commit \| commitdiff \| tree
2011-08-10	Stephan Saalfeld	use MovingLeastSquaresTransform2 for warping in multi...	commit \| commitdiff \| tree
2011-08-10	Stephan Saalfeld	use MovingLeastSquaresTransform2 in NonLinearTransformMode	commit \| commitdiff \| tree
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