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AlignTask: Fixed missuse of a static variable.
2010-02-19
S
tephan
S
aalfeld
AlignTask: Fi
x
ed missuse of a stati
c
va
r
iable
.
commit
|
commitdiff
|
tree
2010-02-19
Stepha
n
S
aalfel
d
R
e
move the
n
e
ver used
s
hake metho
d
from abstrac
t
M
o
del
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Sa
a
l
feld
Fixed
a bug that made the original i
m
a
ge appear be
h
ind
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
han Saal
f
eld
Synch
r
onized screenPa
t
chRa
n
g
e
s
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
m
inor
c
leanup
in lenscorre
c
tion
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saal
f
e
ld
Added Trans
f
ormMeshMappingWithMa
s
k
s
for more
efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
han Saalfeld
NonLin
e
ar
T
ransformMode
c
an
p
ropagate t
h
e transformatio
n
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
ephan Saalfeld
For now
,
d
on't
s
cale maxE
p
sil
o
n
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saal
f
eld
Align Multi-L
a
yer-Mosaic: Use up to 2x
m
a
x
Octa
v
eSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saal
f
eld
Finished th
e
deform operation to
c
onsider
a
ll graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n S
a
alfeld
Fixed Float
.
MI
N
_VALUE t
o
F
loat
.
MAX
_
V
A
L
UE where it remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
lfeld
alignM
u
lt
i
LayerMo
s
aic finally uses graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
ha
n
S
aalfe
l
d
change
d
defaul
t
valu
e
of SIF
T
.
maxOctaveS
i
ze = 600
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han Saalfeld
f
i
xed
pairOverlapp
i
n
gTiles( Li
s
t,
L
ist, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan S
a
alf
e
l
d
added
c
orre
s
p
ondence
w
eight as a paramete
r
to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
S
t
eph
a
n
S
aalfeld
Merge branch 'master
'
into
b
u
nwarp
j
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saalf
e
ld
Me
r
ge
b
ranch 'master' into b
u
nwa
r
pj
commit
|
commitdiff
|
tree
2009-11-04
Stephan Saalfeld
Me
r
ge b
r
anch 'master' i
n
to bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
S
t
eph
a
n Saalfe
l
d
Fixed
C
o
mpositeModes to
work in the fo
l
l
o
wing con
f
igurations
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Revert "Work around an
n
oying bug in Grap
h
ic
s
2
D
,
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
F
i
xed
Co
m
positeModes to wo
r
k in the following co
n
figurations
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfeld
Separat
i
ng A
l
ignLayersTask from AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "Work
a
round a
n
n
oying b
u
g
i
n Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n
S
aalf
e
ld
M
erge bran
c
h 'master' i
n
to c
o
mposit
e
-modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
A
dd
A
R
G
B
Compo
s
it
e
can ha
n
dle image with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
S
teph
a
n Saalf
e
ld
Adde
d
a comment in Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan
Saalfe
l
d
refactor
e
d a
misnamed method and stat
i
fied some p
a
rameters in
commit
|
commitdiff
|
tree
2009-10-14
S
t
e
phan Saalfeld
synchr
o
ni
z
ed p
o
tentially
c
oncu
r
re
n
cy unsafe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
Fixed the
geometry issues an
d
added s
u
p
port for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfeld
Catch
i
ng and handling
O
ut
O
f
M
emoryErrors in FeatureExtra
c
t
i
on
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Cosmetics in
AlignTa
s
k and
S
imilari
t
yMod
e
l2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
lens
c
orrection stops now late
r
but latest after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Step
h
an Saalfeld
Merge bra
n
ch 'maste
r
'
of
s
s
h
://
r
epo
.
o
r
.
cz/srv/git/tra
k
e
m
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
M
e
rge br
a
nc
h
'maste
r
' of s
s
h://repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2009-10-07
S
tephan Saal
f
eld
Fix 0
.
5grey backg
r
o
und for ByteProcessors in
commit
|
commitdiff
|
tree
2009-09-24
Stephan S
a
alf
e
ld
Merge br
a
n
ch 'ma
s
ter' o
f
ssh://
r
epo
.
or
.
c
z
/
srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saal
f
eld
Saving a lot o
f
RAM i
n
vis
u
alizing the lens distortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
Sa
a
lfeld
Mer
g
e
bran
c
h
'
s
tac
k
'
into al
i
gn
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n
Saa
l
feld
Hopefully fi
x
ed the scaling
i
n Stack
commit
|
commitdiff
|
tree
2009-09-17
Stephan S
a
a
l
feld
Merge branch '
s
tack' int
o
a
lign
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
ha
n
Saalfel
d
Me
r
ge branch 'stack' o
f
ssh://rep
o
.
o
r
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Mer
g
e
br
a
nch 'stack'
into a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Saalfeld
separated the actual
a
lignL
a
yersLinearly
j
ob f
r
o
m
the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Loader uses
db_lock
commit
|
commitdiff
|
tree
2009-09-16
S
tep
h
an Saalfeld
Merge
b
ra
n
ch 'align' of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
Fixed a bug that preven
t
e
d the multi-la
y
er mosaicki
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
Me
r
g
e
bra
n
ch
'
stac
k
' of ssh://repo
.
or
.
cz/srv/git/tra
k
em2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
S
a
a
lf
e
ld
a very inter
m
edia
t
e
comm
i
t
t
h
at interrupts me at starting t
h
e
commit
|
commitdiff
|
tree
2009-09-11
Steph
a
n
S
aal
f
eld
decaching wa
s
not succ
e
ssful---truing anothe
r
one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
S
t
ephan Saalfeld
Decache p
r
ocessed
p
atches after applica
t
i
o
n of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an Saalfeld
Me
r
ge branch 'align' of ssh://repo
.
o
r
.
cz/
s
rv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saalf
e
l
d
Added a def
o
rm option to
the
m
u
l
t
i-layer-mosaic met
h
od
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfe
l
d
Added
a
deform option to the multi-layer-m
o
saic method
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an Saa
l
feld
Added
a
convenience
m
et
h
od to export a flat
i
mage for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Cosmetics (removed
some n
o
n
-requi
r
ed
i
m
p
orts and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an
S
aalf
e
ld
A a static method to get th
e
bou
n
ding bo
x
of a c
o
lle
c
tio
n
of
commit
|
commitdiff
|
tree
2009-09-02
Stephan Saa
l
feld
* Fixed wrong blur
r
i
n
g
commit
|
commitdiff
|
tree
2009-09-01
Stephan S
a
alfeld
i
ctScale was inverse
-
--anyway---there ar
e
rem
a
ining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
St
e
ph
a
n Saalfeld
Pseudo-fix f
o
r l
o
ckin
g
issues
commit
|
commitdiff
|
tree
2009-09-01
Stephan Sa
a
lfe
l
d
Created
t
he following ARGB composite modes for
two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
St
e
phan Sa
a
lfe
l
d
R
e
m
ov
e
d the
b
r
oken AddRGBComposite and added a
f
unct
i
onal
commit
|
commitdiff
|
tree
2009-08-31
Stephan
Saalfeld
first attempt to create an a
d
di
n
g Co
m
positeContext
commit
|
commitdiff
|
tree
2009-08-31
St
e
ph
a
n Saalfeld
a
dded
t
a
b for stack z-displayable
commit
|
commitdiff
|
tree
2009-08-31
St
e
phan Saa
l
feld
St
a
ck assu
r
es the correct
s
m
o
othing
f
or
the
s
cale introduc
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalf
e
ld
AffineTransfor
m
M
o
de notifie
s
all
a
ffected D
i
s
playab
l
es
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
S
tepha
n
Saalfel
d
* Fixe
d
bounding b
o
x estimation
commit
|
commitdiff
|
tree
2009-08-30
Stephan S
a
alfeld
*
removed non-
r
equired method
s
from patch
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
consistentl
y
i
m
pl
e
ment
e
d invert
i
b
le coo
r
d
i
n
atetransform
s
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
Added
Inver
t
i
bleCoordinateTra
n
sformList
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
Inverti
b
leC
o
ordina
t
eTran
s
fo
r
m
implem
e
nts Co
o
r
d
inateTransfor
m
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
pr
o
p
e
r
t
ype Co
o
rdinateTransformLi
s
t
.
clone()
commit
|
commitdiff
|
tree
2009-08-06
Step
h
an Saalfeld
Fix Bug 71
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
Me
r
ge bra
n
ch 'master'
o
f ssh://saalfeld@repo
.
or
.
c
z
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
S
tephan Sa
a
lf
e
ld
M
erge bra
n
ch 'ma
s
ter' into iterating-lenscorrection
commit
|
commitdiff
|
tree
2009-07-06
St
e
ph
a
n Saalfeld
Fix
e
d the iteration in
lens-correction such that
t
he
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
St
e
ph
a
n Saalfel
d
Implemeted
i
tera
t
ing lens-correct
i
on as described in
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
T
ransfo
r
mMesh
M
a
p
ping sets
I
nterpola
t
ionMe
t
hod (tracking
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalf
e
ld
M
e
r
g
e bran
c
h 'p
a
in
t
ables'
commit
|
commitdiff
|
tree
2009-06-29
S
tephan Saalfeld
DistortionCorre
c
tionTask finally does
the all to all
commit
|
commitdiff
|
tree
2009-06-29
St
e
phan Saalfel
d
Abstra
c
tAffi
n
eTile2D
c
an identify the co
m
mon Po
i
ntMatche
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
Fixed t
r
ansform
m
esh
m
app
i
n
g
.
j
s test to
conform with
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
Stephan S
a
alfeld
A no
t
so
i
mportant im
p
ro
v
e
m
ent of how
p
oint
c
orr
e
sponden
c
e
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
pha
n
Saalfeld
Fixed accid
e
ntially inver
t
e
d affine c
o
n
catenation
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
S
t
e
phan Saalfel
d
Merge branch
'paintabl
e
s' of ssh://saalfeld@r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Apply
i
n N
o
nLinearTransformMode
w
orks
.
I
t
was tes
t
ed
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Step
h
an
S
a
a
lfeld
Fixed XML p
a
rsing of Co
o
rdinateTran
s
formL
i
s
ts
.
T
h
e
y
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Steph
a
n
S
aalfel
d
Added
TrakEM2 extension of AffineMod
e
l2D
commit
|
commitdiff
|
tree
2009-06-25
Stephan Sa
a
lfeld
Fixed several bugs in
and extended MovingLeastSquaresTransform:
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saal
f
eld
Patch
c
alculates the memory to free for r
e
nd
e
ring a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
S
aalfe
l
d
Coordi
n
ateTran
s
formList has a gen
e
ric para
m
eter that
.
.
.
commit
|
commitdiff
|
tree
2009-06-22
S
tephan Saalfeld
Merge
branch 'pain
t
a
b
le
s
' of ssh://s
a
a
l
feld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-20
St
e
phan Saalfeld
Align will no
t
accept m
o
d
els with less than 7
inlier
s
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan Saalfeld
Align will no
t
a
c
ce
p
t models with less than 7 inliers
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan
Saalfeld
W
o
r
karound for
a bug which
w
as pr
o
bably i
n
troduc
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Stephan Saalfel
d
Merge bran
c
h 'pa
i
ntables' of ssh://sa
a
lfeld@repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Steph
a
n
S
aalfeld
Keep Points in wor
l
d space and correct for affine invar
i
ance
.
.
.
commit
|
commitdiff
|
tree
2009-06-16
Stephan Saalf
e
ld
Keep Points in world space and corre
c
t
f
or a
f
fine inva
r
ianc
e
.
.
.
commit
|
commitdiff
|
tree
2009-06-13
Stephan Saalfeld
Added s
e
veral TODOs
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saalfe
l
d
Merge branch 'p
a
intables' of ssh
:
//saalf
e
ld@rep
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saa
l
feld
N
o
n
LinearTr
a
nsformMode can apply, b
u
t stil
l
it looks
.
.
.
commit
|
commitdiff
|
tree
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