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README: mentioning other make targets seem unnecessary
2012-10-22
Ali
G
h
o
lami Rudi
READ
M
E: mentioning
o
ther make
t
argets
seem unnecessary
commit
|
commitdiff
|
tree
2012-10-22
Ali
G
h
olami Rudi
READ
M
E: update the address of rangi
.
dat
.
tar
.
gz
commit
|
commitdiff
|
tree
2012-10-19
Ali G
h
o
la
m
i Ru
d
i
rangi
:
che
c
k
t
h
e number o
f
vert
i
c
e
s in re
a
cha
b
le() too
commit
|
commitdiff
|
tree
2012-10-19
Ali
G
h
o
l
ami Rudi
ran
g
i: im
p
ro
v
e some of the
comments
commit
|
commitdiff
|
tree
2012-10-18
Al
i
Gholami
Rud
i
r
angi: clear used[] if the ma
t
ching test
f
ails in kavosh
commit
|
commitdiff
|
tree
2012-10-17
A
l
i
Gho
l
ami
R
udi
rangi:
a
dd
-v to prin
t
th
e
motifs
a
s th
e
y are de
t
ect
e
d
commit
|
commitdiff
|
tree
2012-10-17
Ali
Gh
o
lam
i
Ru
d
i
r
angi:
p
erform the
m
atching test ba
s
ed on th
e
# of
.
.
.
commit
|
commitdiff
|
tree
2012-10-17
Ali Gholam
i
R
udi
RE
A
DME:
b
riefly introduce program
s
besides rangi
commit
|
commitdiff
|
tree
2012-10-17
Ali Gholami
R
u
d
i
README: document
the n
e
w fi
l
e
format and mkra
n
gi
.
sh
commit
|
commitdiff
|
tree
2012-10-17
A
l
i
G
holami
Rudi
mkrangi
.
sh
:
create rangi inputs fr
o
m bi
o
l
ogi
c
a
l files
commit
|
commitdiff
|
tree
2012-10-17
Ali Gholami Ru
d
i
rangi: skip
r
oots without nsub colors
in
their n
e
i
ghborhoo
d
commit
|
commitdiff
|
tree
2012-10-16
Al
i
Gholami R
u
d
i
tes
t
:
dot f
i
les
ar
e
no longer sup
p
orted
commit
|
commitdiff
|
tree
2012-10-16
Al
i
G
h
o
lami Rudi
bl2exp:
extract blast e-value from
bl
a
stp
output
commit
|
commitdiff
|
tree
2012-10-16
Ali
G
holami Rudi
fast
a
f
i
lt: filter
fa
s
t
a
files based on its
c
omplexes
commit
|
commitdiff
|
tree
2012-10-16
Ali Gh
o
lami Rudi
m
e
val: co
u
nt th
e
co
m
plexes
co
n
taini
n
g a motif
commit
|
commitdiff
|
tree
2012-10-16
A
l
i Ghola
m
i Rudi
rangi: -m uses matchi
n
g to identify infeasibl
e
subgraphs
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
proc: fix ns
u
b_dete
c
t()
f
o
r
m
ultiple threads
commit
|
commitdiff
|
tree
2012-10-16
Ali Gh
o
lami Rudi
conv: use
a hash t
a
b
l
e
for
s
toring protein names
commit
|
commitdiff
|
tree
2012-10-16
Ali G
h
olami Rudi
con
v
: switching to gramofon
e
-st
y
le interact
i
on files
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
conv: fix b
l
as
t
thre
s
hold checking
commit
|
commitdiff
|
tree
2012-10-10
A
li Gho
l
ami
R
udi
ran
g
i: ignore nsub_detect() with -1 op
t
ion
commit
|
commitdiff
|
tree
2012-10-10
Ali Gholam
i
Rud
i
rangi: early
m
o
tif
detection heuristi
c
commit
|
commitdiff
|
tree
2012-10-07
A
li Ghola
m
i
R
udi
rangi: make the -1 argume
n
t jump si
z
es with
a
t
leas
t
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Al
i
Gholami Rud
i
ran
g
i: add -e to perform exhau
s
t
ive search
commit
|
commitdiff
|
tree
2012-10-03
Ali Gh
o
l
ami Rudi
rangi: per
f
or
m
the m
a
tching only on valid nodes
commit
|
commitdiff
|
tree
2012-09-30
A
li
Gholami Rudi
rangi
:
use fanmod by default
commit
|
commitdiff
|
tree
2012-09-29
A
li Gholami Rudi
rangi: a
d
d -f
t
o u
s
e fanm
o
d instead of ka
v
osh
commit
|
commitdiff
|
tree
2012-09-29
Ali Gh
o
lami Rudi
c
onv: the fin
a
l
a
rguments of conv are
t
he qu
e
ry pro
t
ei
n
s
commit
|
commitdiff
|
tree
2012-09-29
Ali G
h
ol
a
m
i
Rudi
adopt a new file f
o
rmat to report motif
p
r
ot
e
i
ns
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rud
i
Make
f
ile: c
h
ang
i
n
g
rangi
.
h should force
a rebuild
commit
|
commitdiff
|
tree
2012-09-28
Ali Gholami
R
udi
rangi-0
.
0
commit
|
commitdiff
|
tree
