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README: document the new file format and mkrangi.sh
2012-10-17
A
l
i Gh
o
lami
R
udi
REA
D
ME: d
o
cument the new file format and mkrangi
.
sh
commit
|
commitdiff
|
tree
2012-10-17
Ali G
h
olami Rudi
mkrang
i
.
sh: create rangi
inputs fr
o
m
biological files
commit
|
commitdiff
|
tree
2012-10-17
A
l
i Gholam
i
Rud
i
rangi: skip roots without nsub
colors in their n
e
ighborhood
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami
Rudi
test: dot
files are n
o
longer supported
commit
|
commitdiff
|
tree
2012-10-16
Ali
G
hola
m
i Rud
i
bl
2
exp: extract blast e-value from blastp o
u
tput
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
fastafilt: fi
l
ter
f
asta
f
il
e
s based on its comple
x
es
commit
|
commitdiff
|
tree
2012-10-16
A
li Gholami Rudi
meval: count
t
he
c
ompl
e
xes
c
o
ntaining a m
o
t
i
f
commit
|
commitdiff
|
tree
2012-10-16
Ali G
h
olami Rudi
rangi:
-
m us
e
s m
a
tc
h
ing to identify infeasible subgraphs
commit
|
commitdiff
|
tree
2012-10-16
A
li
G
holami Rudi
p
r
o
c: f
i
x ns
u
b
_det
e
ct() f
o
r m
u
ltiple threads
commit
|
commitdiff
|
tree
2012-10-16
Ali Gho
l
ami
R
udi
c
o
nv: use a
h
ash t
a
ble for storing protein names
commit
|
commitdiff
|
tree
2012-10-16
Al
i
Gh
o
lami Rudi
c
o
nv: switching to gramofone-style
interaction files
commit
|
commitdiff
|
tree
2012-10-16
Ali Gho
l
ami Rudi
conv: fix
b
l
a
s
t t
h
resh
o
ld
c
h
ecking
commit
|
commitdiff
|
tree
2012-10-10
A
l
i
G
holami Rudi
ra
n
gi: i
g
no
r
e nsub
_
dete
c
t() wit
h
-1 optio
n
commit
|
commitdiff
|
tree
2012-10-10
Ali
G
holami Rudi
rangi
:
early motif
d
etect
i
o
n heuristic
commit
|
commitdiff
|
tree
2012-10-07
A
l
i Gho
l
ami Ru
d
i
rangi: make th
e
-1
a
rgument ju
m
p siz
e
s with at least
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
A
l
i Gholami Rudi
r
angi:
a
dd -
e
to
p
erform exhaustive search
commit
|
commitdiff
|
tree
2012-10-03
Ali Gholami Rudi
rangi:
p
erform the
m
atching onl
y
on valid
nodes
commit
|
commitdiff
|
tree
2012-09-30
Ali Gholami R
u
di
rangi: use fanm
o
d
by default
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rudi
ran
g
i
: add
-
f t
o
use
fanmod instea
d
of k
a
v
o
sh
commit
|
commitdiff
|
tree
2012-09-29
Ali
G
ho
l
ami Rudi
conv: the final arguments of conv are the query p
r
oteins
commit
|
commitdiff
|
tree
2012-09-29
Al
i
Gholami Rudi
a
dopt a new
file
f
o
rmat
t
o
repo
r
t motif protei
n
s
commit
|
commitdiff
|
tree
2012-09-29
Ali
G
holami Rudi
Mak
e
file: c
h
anging r
a
ngi
.
h sho
u
ld
f
o
rce a r
e
bu
i
ld
commit
|
commitdiff
|
tree
2012-09-28
Ali Gholami Rudi
rangi-
0
.
0
commit
|
commitdiff
|
tree
